Phyre 2 Results for RVBD0747_(PE_PGRS10)_838454

Email	mdejesus@rockefeller.edu
Description	RVBD0747_(PE_PGRS10)_838454_840859
Date	Fri Jul 26 01:50:32 BST 2019
Unique Job ID	9364e7ad3de8dad2
Sequence	MSWVMVSPEL ... Download FASTA
Job Type	normal
Job Expiry

Summary

Top model

Image coloured by rainbow N → C terminus

Model dimensions (Å):

X:53.446 Y:47.722 Z:2919.980

Model (left) based on template c1ygvA_

Top template information

PDB header:structural protein/contractile protein
Chain: A: PDB Molecule:collagen i alpha 1;
PDBTitle: the structure of collagen type i. single type i collagen2 molecule: rigid refinment

Confidence and coverage

Confidence:

100.0%

Coverage:

88%

704 residues ( 88% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.

Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.

782 residues ( 98%) could be modelled at >90% confidence using multiple-templates.

You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.

Warning: 90% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.

3D viewing

Interactive 3D view in JSmol

For other options to view your downloaded structure offline see the FAQ

Sequence analysis

Download FASTA version

Secondary structure and disorder prediction [Show]

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60

Sequence M S W V M V S P E L V V A A A A D L A G I G S A I S S A N A A A A V N T T G L L T A G A D E V S T A I A A L F G A Q G Q

Secondary structure

SS confidence

Disorder ? ? ?
? ?
? ? ? ? ? ? ? ?
? ?

Disorder confidence

. . . . . . . . . 70 . . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120

Sequence A Y Q A A S A Q A A A F Y A Q F V Q A L S A G G G A Y A A A E A A A V S P L L A P I N A Q F V A A T G R P L I G N G A N

Secondary structure

SS confidence

Disorder
? ? ? ? ? ? ? ? ? ? ? ?
? ? ?
? ? ? ? ? ? ? ? ?
? ? ? ? ?

Disorder confidence

. . . . . . . . . 130 . . . . . . . . . 140 . . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180

Sequence G A P G T G A N G G P G G W L I G N G G A G G S G A P G A G A G G N G G A G G L F G S G G A G G A S T D V A G G A G G A

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210 . . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240

Sequence G G A G G N A G M L F G A A G V G G V G G F S N G G A T G G A G G A G G A G G L F G A G G E G G S G G S G N L T G G A G

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280 . . . . . . . . . 290 . . . . . . . . . 300

Sequence G A G G N A G T L A T G D G G A G G T G G A S R S G G F G G A G G A G G D A G M F F G S G G S G G A G G I S R S V G D G

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350 . . . . . . . . . 360

Sequence A A G G A G G A P G L I G N G G N G G N G G A S T G G G D G G P G G A G G T G V L I G N G G N G G S G G T G A T L G K A

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence G I G G T G G V L L G L D G F T A P A S T S P L H T L Q Q D V I N M V N D P F Q T L T G R P L I G N G A N G T P G T G A

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480

Sequence D G G A G G W L F G N G G N G G Q G T I G G V N G G A G G A G G A G G I L F G T G G T G G S G G P G A T G L G G I G G A

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 490 . . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540

Sequence G G A A L L F G S G G A G G S G G A G A V G G N G G A G G N A G A L L G A A G A G G A G G A G A V G G N G G A G G N G G

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 550 . . . . . . . . . 560 . . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600

Sequence L F A N G G A G G P G G F G S P A G A G G I G G A G G N G G L F G A G G T G G A G G G S T L A G G A G G A G G N G G L F

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630 . . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660

Sequence G A G G T G G A G S H S T A A G V S G G A G G A G G D A G L L S L G A S G G A G G S G G S S L T A A G V V G G I G G A G

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700 . . . . . . . . . 710 . . . . . . . . . 720

Sequence G L L F G S G G A G G S G G F S N S G N G G A G G A G G D A G L L V G S G G A G G A G A S A T G A A T G G D G G A G G K

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770 . . . . . . . . . 780

Sequence S G A F G L G G D G G A G G A T G L S G A F H I G G K G G V G G S A V L I G N G G N G G N G G N S G N A G K S G G A P G

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 790 . . . . . . . . . 800 .

Sequence P S G A G G A G G L L L G E N G L N G L M

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ?
? ?
? ? ? ? ? ? ?

Disorder confidence

Confidence Key
High(9) Low (0)

? Disordered ( 90%)

Alpha helix ( 12%)

Beta strand ( 0%)

Domain analysis [Show]

Rank Aligned region

PDB 1ygv chain A

3D model

Region: 97 - 801
Aligned: 704
Modelled: 705
Confidence: 100.0%
Identity: 26%
PDB header:structural protein/contractile protein
Chain: A: PDB Molecule:collagen i alpha 1;
PDBTitle: the structure of collagen type i. single type i collagen2 molecule: rigid refinment

Phyre2

PDB 3hqv chain B

3D model

Region: 100 - 799
Aligned: 696
Modelled: 698
Confidence: 100.0%
Identity: 29%
PDB header:structural protein, contractile protein
Chain: B: PDB Molecule:collagen alpha-2(i) chain;
PDBTitle: low resolution, molecular envelope structure of type i2 collagen in situ determined by fiber diffraction. single3 type i collagen molecule, rigid body refinement

Phyre2

PDB 1y0f chain B

3D model

Region: 98 - 776
Aligned: 678
Modelled: 679
Confidence: 100.0%
Identity: 24%
PDB header:structural protein/contractile protein
Chain: B: PDB Molecule:collagen i alpha 2;
PDBTitle: the structure of collagen type i. single type i collagen2 molecule

Phyre2

PDB 5xfs chain A

3D model

Region: 7 - 84
Aligned: 78
Modelled: 78
Confidence: 99.8%
Identity: 47%
PDB header:protein transport
Chain: A: PDB Molecule:pe family protein pe8;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis

Phyre2

PDB 2g38 chain A

3D model

Region: 8 - 84
Aligned: 77
Modelled: 77
Confidence: 99.8%
Identity: 29%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:pe family protein;
PDBTitle: a pe/ppe protein complex from mycobacterium tuberculosis

Phyre2

PDB 2g38 chain A domain 1

3D model

Region: 8 - 84
Aligned: 77
Modelled: 77
Confidence: 99.8%
Identity: 29%
Fold: Ferritin-like
Superfamily: PE/PPE dimer-like
Family: PE

Phyre2

PDB 2pne chain A

Region: 668 - 748
Aligned: 81
Modelled: 81
Confidence: 98.3%
Identity: 40%
PDB header:antifreeze protein
Chain: A: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: crystal structure of the snow flea antifreeze protein

Phyre2

PDB 3boi chain B

3D model

Region: 668 - 748
Aligned: 81
Modelled: 81
Confidence: 98.3%
Identity: 40%
PDB header:antifreeze protein
Chain: B: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: snow flea antifreeze protein racemate

Phyre2

PDB 3boi chain A

3D model

Region: 668 - 748
Aligned: 81
Modelled: 81
Confidence: 98.3%
Identity: 40%
PDB header:antifreeze protein
Chain: A: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: snow flea antifreeze protein racemate

Phyre2

PDB 3bog chain B

3D model

Region: 660 - 739
Aligned: 79
Modelled: 80
Confidence: 98.3%
Identity: 34%
PDB header:antifreeze protein
Chain: B: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: snow flea antifreeze protein quasi-racemate

Phyre2

PDB 3bog chain A

3D model

Region: 660 - 739
Aligned: 79
Modelled: 80
Confidence: 98.3%
Identity: 34%
PDB header:antifreeze protein
Chain: A: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: snow flea antifreeze protein quasi-racemate

Phyre2

PDB 1nay chain C

3D model

Region: 725 - 774
Aligned: 48
Modelled: 50
Confidence: 96.9%
Identity: 23%
PDB header:structural protein
Chain: C: PDB Molecule:collagen-like peptide;
PDBTitle: gpp-foldon:x-ray structure

Phyre2

PDB 5ctd chain B

Region: 734 - 772
Aligned: 39
Modelled: 39
Confidence: 96.4%
Identity: 26%
PDB header:structural protein
Chain: B: PDB Molecule:collagen alpha-2(i) chain,collagen alpha-2(ix) chain;
PDBTitle: crystal structure of the type ix collagen nc2 hetero-trimerization2 domain with a guest fragment a2a1a1 of type i collagen

Phyre2

PDB 5ctd chain A

3D model

Region: 734 - 772
Aligned: 39
Modelled: 39
Confidence: 96.3%
Identity: 26%
PDB header:structural protein
Chain: A: PDB Molecule:collagen alpha-1(i) chain,collagen alpha-1(ix) chain;
PDBTitle: crystal structure of the type ix collagen nc2 hetero-trimerization2 domain with a guest fragment a2a1a1 of type i collagen

Phyre2

PDB 5cti chain C

3D model

Region: 734 - 772
Aligned: 39
Modelled: 39
Confidence: 96.2%
Identity: 26%
PDB header:structural protein
Chain: C: PDB Molecule:collagen alpha-1(i) chain,collagen alpha-3(ix) chain;
PDBTitle: crystal structure of the type ix collagen nc2 hetero-trimerization2 domain with a guest fragment a2a1a1 of type i collagen (native form)

Phyre2

PDB 2klw chain A

3D model

Region: 711 - 740
Aligned: 30
Modelled: 30
Confidence: 78.2%
Identity: 33%
PDB header:de novo protein
Chain: A: PDB Molecule:(pkg)10;
PDBTitle: solution structure of an abc collagen heterotrimer reveals a2 single-register helix stabilized by electrostatic3 interactions

Phyre2

PDB 1k6f chain D

3D model

Region: 744 - 772
Aligned: 29
Modelled: 29
Confidence: 25.2%
Identity: 28%
PDB header:structural protein
Chain: D: PDB Molecule:collagen triple helix;
PDBTitle: crystal structure of the collagen triple helix model [(pro-pro-gly)2 10]3

Phyre2

PDB 1k6f chain F

3D model

Region: 744 - 772
Aligned: 29
Modelled: 29
Confidence: 25.2%
Identity: 28%
PDB header:structural protein
Chain: F: PDB Molecule:collagen triple helix;
PDBTitle: crystal structure of the collagen triple helix model [(pro-pro-gly)2 10]3

Phyre2

PDB 1k6f chain E

3D model

Region: 744 - 772
Aligned: 29
Modelled: 29
Confidence: 25.2%
Identity: 28%
PDB header:structural protein
Chain: E: PDB Molecule:collagen triple helix;
PDBTitle: crystal structure of the collagen triple helix model [(pro-pro-gly)2 10]3

Phyre2

PDB 1k6f chain C

3D model

Region: 744 - 772
Aligned: 29
Modelled: 29
Confidence: 25.2%
Identity: 28%
PDB header:structural protein
Chain: C: PDB Molecule:collagen triple helix;
PDBTitle: crystal structure of the collagen triple helix model [(pro-pro-gly)2 10]3

Phyre2

1
c1ygvA_

2
c3hqvB_

3
c1y0fB_

4
c5xfsA_

5
c2g38A_

6
d2g38a1

7
c2pneA_

8
c3boiB_

9
c3boiA_

10
c3bogB_

11
c3bogA_

12
c1nayC_

13
c5ctdB_

14
c5ctdA_

15
c5ctiC_

16
c2klwA_

17
c1k6fD_

18
c1k6fF_

19
c1k6fE_

20
c1k6fC_

21

22

23

24

25

26

27

28

29

30

31

32

33

34

35

36

37

38

39

40