Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0748_(-)_840950_841207
DateFri Jul 26 01:50:32 BST 2019
Unique Job IDabe5680934c5f752
SequenceMRTTVSISDE ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:29.595 Y:46.351 Z:33.568
Model (left) based on template c5x3tA_
Top template information
PDB header:antitoxin/toxin
Chain: A: PDB Molecule:antitoxin vapb26;
PDBTitle: vapbc from mycobacterium tuberculosis
Confidence and coverage
Confidence: 96.5% Coverage: 58%
49 residues ( 58% of your sequence) have been modelled with 96.5% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5x3tA_
96.5 37
PDB header:antitoxin/toxin
Chain: A: PDB Molecule:antitoxin vapb26;
PDBTitle: vapbc from mycobacterium tuberculosis
2c2k5jB_
95.7 10
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yiif;
PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1
3d2bsqe1
95.4 28
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Trafficking protein A-like
4c2bj3D_
95.3 23
PDB header:transcription
Chain: D: PDB Molecule:nickel responsive regulator;
PDBTitle: nikr-apo
5c2h1oH_
95.0 28
PDB header:gene regulation/dna complex
Chain: H: PDB Molecule:trafficking protein a;
PDBTitle: structure of fitab bound to ir36 dna fragment
6c6a7vU_
95.0 33
PDB header:toxin/antitoxin
Chain: U: PDB Molecule:antitoxin vapb11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
7c1q5vB_
94.8 28
PDB header:transcription
Chain: B: PDB Molecule:nickel responsive regulator;
PDBTitle: apo-nikr
8d2bj7a1
94.7 23
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
9c2ca9B_
94.2 23
PDB header:transcription
Chain: B: PDB Molecule:putative nickel-responsive regulator;
PDBTitle: apo-nikr from helicobacter pylori in closed trans-2 conformation
10d2hzaa1
92.4 28
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
11d1p94a_
92.3 19
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
12d2hzab1
91.6 28
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
13c3kk4B_
89.2 16
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein bp1543;
PDBTitle: uncharacterized protein bp1543 from bordetella pertussis tohama i
14c6g1nB_
87.1 18
PDB header:antitoxin
Chain: B: PDB Molecule:antitoxin hicb;
PDBTitle: crystal structure of the burkholderia pseudomallei antitoxin hicb
15c2an7A_
86.1 21
PDB header:dna binding protein
Chain: A: PDB Molecule:protein pard;
PDBTitle: solution structure of the bacterial antidote pard
16c4aaiB_
85.3 15
PDB header:viral protein
Chain: B: PDB Molecule:orf e73;
PDBTitle: thermostable protein from hyperthermophilic virus ssv-rh
17c4a1qB_
85.3 15
PDB header:viral protein
Chain: B: PDB Molecule:orf e73;
PDBTitle: solution structure of e73 protein from sulfolobus spindle-2 shaped virus ragged hills, a hyperthermophilic3 crenarchaeal virus from yellowstone national park
18c2kelB_
85.1 13
PDB header:transcription repressor
Chain: B: PDB Molecule:uncharacterized protein 56b;
PDBTitle: structure of the transcription regulator svtr from the2 hyperthermophilic archaeal virus sirv1
19d1mnta_
83.5 15
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
20c4p7dA_
83.1 11
PDB header:toxin
Chain: A: PDB Molecule:antitoxin hicb3;
PDBTitle: antitoxin hicb3 crystal structure
21c2k29A_
not modelled 81.1 15
PDB header:transcription
Chain: A: PDB Molecule:antitoxin relb;
PDBTitle: structure of the dbd domain of e. coli antitoxin relb
22c1u9pA_
not modelled 78.3 22
PDB header:unknown function
Chain: A: PDB Molecule:parc;
PDBTitle: permuted single-chain arc
23c5yrzC_
not modelled 75.8 26
PDB header:antitoxin/hydrolase
Chain: C: PDB Molecule:hicb;
PDBTitle: toxin-antitoxin complex from streptococcus pneumoniae
24c1xrxD_
not modelled 73.0 25
PDB header:replication inhibitor
Chain: D: PDB Molecule:seqa protein;
PDBTitle: crystal structure of a dna-binding protein
25d1xrxa1
not modelled 73.0 25
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:SeqA N-terminal domain-like
26c6iyaD_
not modelled 70.0 20
PDB header:antitoxin
Chain: D: PDB Molecule:transcriptional regulator copg family;
PDBTitle: structure of the dna binding domain of antitoxin copaso
27c4fxeB_
not modelled 68.6 13
PDB header:toxin/toxin inhibitor
Chain: B: PDB Molecule:antitoxin relb;
PDBTitle: crystal structure of the intact e. coli relbe toxin-antitoxin complex
28c3qoqC_
not modelled 61.1 16
PDB header:transcription/dna
Chain: C: PDB Molecule:alginate and motility regulator z;
PDBTitle: crystal structure of the transcription factor amrz in complex with the2 18 base pair amrz1 binding site
29c3kxeD_
not modelled 59.1 26
PDB header:protein binding
Chain: D: PDB Molecule:antitoxin protein pard-1;
PDBTitle: a conserved mode of protein recognition and binding in a2 pard-pare toxin-antitoxin complex
30c3h87D_
not modelled 58.3 26
PDB header:toxin/antitoxin
Chain: D: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
31d2cpga_
not modelled 57.3 33
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
32c1ea4K_
not modelled 57.3 33
PDB header:gene regulation/dna
Chain: K: PDB Molecule:transcriptional repressor copg;
PDBTitle: transcriptional repressor copg/22bp dsdna complex
33c4hv0B_
not modelled 56.0 22
PDB header:transcription, viral protein
Chain: B: PDB Molecule:avtr;
PDBTitle: structure and function of avtr, a novel transcriptional regulator from2 a hyperthermophilic archaeal lipothrixvirus
34c3fmtF_
not modelled 48.8 19
PDB header:replication inhibitor/dna
Chain: F: PDB Molecule:protein seqa;
PDBTitle: crystal structure of seqa bound to dna
35c6a6xC_
not modelled 48.5 28
PDB header:toxin
Chain: C: PDB Molecule:antitoxin maze7;
PDBTitle: the crystal structure of the mtb maze-mazf-mt9 complex
36c2k6lA_
not modelled 47.6 24
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: the solution structure of xacb0070 from xanthonomas2 axonopodis pv citri reveals this new protein is a member of3 the rhh family of transcriptional repressors
37c2rbfB_
not modelled 44.8 15
PDB header:oxidoreductase/dna
Chain: B: PDB Molecule:bifunctional protein puta;
PDBTitle: structure of the ribbon-helix-helix domain of escherichia coli puta2 (puta52) complexed with operator dna (o2)
38c4q2uM_
not modelled 33.4 10
PDB header:toxin/toxin repressor
Chain: M: PDB Molecule:antitoxin dinj;
PDBTitle: crystal structure of the e. coli dinj-yafq toxin-antitoxin complex
39d1rkta2
not modelled 32.8 11
Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
40c5cegC_
not modelled 30.9 17
PDB header:toxin
Chain: C: PDB Molecule:addiction module antidote protein, copg/arc/metj family;
PDBTitle: x-ray structure of toxin/anti-toxin complex from mesorhizobium2 opportunistum
41c2mdvB_
not modelled 27.8 31
PDB header:de novo protein
Chain: B: PDB Molecule:designed protein;
PDBTitle: nmr structure of beta alpha alpha 38
42c6ajnF_
not modelled 26.3 14
PDB header:toxin
Chain: F: PDB Molecule:duf1778 domain-containing protein;
PDBTitle: crystal structure of atatr bound with accoa
43c4me7E_
not modelled 25.9 20
PDB header:hydrolase/hydrolase inhibitor
Chain: E: PDB Molecule:antitoxin endoai;
PDBTitle: crystal structure of bacillus subtilis toxin mazf in complex with2 cognate antitoxin maze
44d1b28a_
not modelled 25.5 24
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
45c6bwqB_
not modelled 24.8 20
PDB header:metal binding protein
Chain: B: PDB Molecule:pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel
PDBTitle: larc2, the c-terminal domain of a cyclometallase involved in the2 synthesis of the npn cofactor of lactate racemase, in complex with3 mnctp
46d1q9ja2
not modelled 24.2 24
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:NRPS condensation domain (amide synthase)
47d1y9ba1
not modelled 21.4 17
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:VCA0319-like
48d1x93a1
not modelled 21.4 22
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
49c1x93B_
not modelled 21.4 22
PDB header:transcription
Chain: B: PDB Molecule:hypothetical protein hp0222;
PDBTitle: nmr structure of helicobacter pylori hp0222
50c2cw1A_
not modelled 18.0 18
PDB header:de novo protein
Chain: A: PDB Molecule:sn4m;
PDBTitle: solution structure of the de novo-designed lambda cro fold2 protein
51c6gtsC_
not modelled 17.5 14
PDB header:transcription
Chain: C: PDB Molecule:duf1778 domain-containing protein;
PDBTitle: structure of the atat-atar complex bound dna
52d1s4ka_
not modelled 16.0 30
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:YdiL-like
53c2qezC_
not modelled 16.0 24
PDB header:lyase
Chain: C: PDB Molecule:ethanolamine ammonia-lyase heavy chain;
PDBTitle: crystal structure of ethanolamine ammonia-lyase heavy chain2 (yp_013784.1) from listeria monocytogenes 4b f2365 at 2.15 a3 resolution
54d1ox0a2
not modelled 15.9 16
Fold:Thiolase-like
Superfamily:Thiolase-like
Family:Thiolase-related
55d1rfma_
not modelled 13.5 17
Fold:L-sulfolactate dehydrogenase-like
Superfamily:L-sulfolactate dehydrogenase-like
Family:L-sulfolactate dehydrogenase-like
56c5vgmA_
not modelled 13.0 21
PDB header:hydrolase
Chain: A: PDB Molecule:dihydroorotase;
PDBTitle: crystal structure of dihydroorotase pyrc from vibrio cholerae in2 complex with zinc at 1.95 a resolution.
57c3t98A_
not modelled 12.5 20
PDB header:protein transport
Chain: A: PDB Molecule:nuclear pore complex protein nup54;
PDBTitle: molecular architecture of the transport channel of the nuclear pore2 complex: nup54/nup58
58d2eg6a1
not modelled 12.5 21
Fold:TIM beta/alpha-barrel
Superfamily:Metallo-dependent hydrolases
Family:Dihydroorotase
59c3t98C_
not modelled 12.3 20
PDB header:protein transport
Chain: C: PDB Molecule:nuclear pore complex protein nup54;
PDBTitle: molecular architecture of the transport channel of the nuclear pore2 complex: nup54/nup58
60c2lxmB_
not modelled 11.6 18
PDB header:protein transport
Chain: B: PDB Molecule:charged multivesicular body protein 5;
PDBTitle: lip5-chmp5
61d1myla_
not modelled 11.5 21
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
62c3c19A_
not modelled 11.2 12
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein mk0293;
PDBTitle: crystal structure of protein mk0293 from methanopyrus kandleri av19
63c6noyB_
not modelled 10.9 22
PDB header:structural protein
Chain: B: PDB Molecule:maintenance of carboxysome positioning b protein, mcsb;
PDBTitle: structure of cyanothece mcdb
64c3pnuA_
not modelled 10.9 21
PDB header:hydrolase
Chain: A: PDB Molecule:dihydroorotase;
PDBTitle: 2.4 angstrom crystal structure of dihydroorotase (pyrc) from2 campylobacter jejuni.
65d2ve8a1
not modelled 9.5 17
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:FtsK C-terminal domain-like
66c3kk1B_
not modelled 9.1 15
PDB header:transferase/dna
Chain: B: PDB Molecule:reverse transcriptase p51 subunit;
PDBTitle: hiv-1 reverse transcriptase-dna complex with nuceotide inhibitor gs-2 9148-diphosphate bound in nucleotide site
67c3jzeC_
not modelled 9.1 21
PDB header:hydrolase
Chain: C: PDB Molecule:dihydroorotase;
PDBTitle: 1.8 angstrom resolution crystal structure of dihydroorotase (pyrc)2 from salmonella enterica subsp. enterica serovar typhimurium str. lt2
68c5ovnA_
not modelled 8.9 20
PDB header:viral protein
Chain: A: PDB Molecule:pol protein;
PDBTitle: crystal strucure of fiv reverse transcriptase
69c1oxhD_
not modelled 8.7 16
PDB header:transferase
Chain: D: PDB Molecule:beta ketoacyl-acyl carrier protein synthase;
PDBTitle: the crystal structure of beta-ketoacyl-[acyl carrier protein] synthase2 ii from streptococcus pneumoniae, triclinic form
70d1baza_
not modelled 8.1 24
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
71d2cqaa1
not modelled 8.1 19
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:TIP49 domain
72c2e4jA_
not modelled 8.0 15
PDB header:isomerase
Chain: A: PDB Molecule:prostaglandin-h2 d-isomerase;
PDBTitle: solution structure of mouse lipocalin-type prostaglandin d2 synthase
73c2kz3A_
not modelled 7.7 24
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein rad51l3;
PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments for human rad51d2 from 1 to 83
74c3gvgA_
not modelled 7.5 22
PDB header:isomerase
Chain: A: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of triosephosphate isomerase from mycobacterium2 tuberculosis
75c1dl5A_
not modelled 7.3 30
PDB header:transferase
Chain: A: PDB Molecule:protein-l-isoaspartate o-methyltransferase;
PDBTitle: protein-l-isoaspartate o-methyltransferase
76c2mn4A_
not modelled 7.3 25
PDB header:de novo protein
Chain: A: PDB Molecule:computational designed protein based on structure template
PDBTitle: nmr solution structure of a computational designed protein based on2 structure template 1cy5
77d1myka_
not modelled 6.9 22
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
78c5eywB_
not modelled 6.8 14
PDB header:isomerase
Chain: B: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of litopenaeus vannamei triosephosphate isomerase2 complexed with 2-phosphoglycolic acid
79c5v0gE_
not modelled 6.6 21
PDB header:hydrolase
Chain: E: PDB Molecule:dihydroorotase;
PDBTitle: crystal structure of dihydroorotase pyrc from yersinia pestis in2 complex with zinc and unknown ligand at 2.4 a resolution.
80c2kebA_
not modelled 6.5 7
PDB header:dna binding protein
Chain: A: PDB Molecule:dna polymerase subunit alpha b;
PDBTitle: nmr solution structure of the n-terminal domain of the dna polymerase2 alpha p68 subunit
81c2a3zC_
not modelled 6.4 33
PDB header:structural protein
Chain: C: PDB Molecule:wiskott-aldrich syndrome protein;
PDBTitle: ternary complex of the wh2 domain of wasp with actin-dnase i
82d1bdta_
not modelled 6.4 22
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
83c5htlA_
not modelled 6.3 23
PDB header:biosynthetic protein
Chain: A: PDB Molecule:msha biogenesis protein mshe;
PDBTitle: structure of mshe with cdg
84c5ibxB_
not modelled 6.1 19
PDB header:isomerase
Chain: B: PDB Molecule:triosephosphate isomerase;
PDBTitle: 1.65 angstrom crystal structure of triosephosphate isomerase (tim)2 from streptococcus pneumoniae
85c6dy3G_
not modelled 6.0 28
PDB header:hydrolase
Chain: G: PDB Molecule:n-acylethanolamine-hydrolyzing acid amidase alpha-subunit;
PDBTitle: caenorhabditis elegans n-acylethanolamine-hydrolyzing acid amidase2 (naaa) ortholog
86c5zg5B_
not modelled 6.0 18
PDB header:isomerase
Chain: B: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of triosephosphate isomerase sadsubaaa mutant from2 opisthorchis viverrini
87d1vrpa1
not modelled 5.8 14
Fold:Guanido kinase N-terminal domain
Superfamily:Guanido kinase N-terminal domain
Family:Guanido kinase N-terminal domain
88c3m9yB_
not modelled 5.8 12
PDB header:isomerase
Chain: B: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of triosephosphate isomerase from methicillin2 resistant staphylococcus aureus at 1.9 angstrom resolution
89d1o5xa_
not modelled 5.7 12
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
90d1g0wa1
not modelled 5.6 18
Fold:Guanido kinase N-terminal domain
Superfamily:Guanido kinase N-terminal domain
Family:Guanido kinase N-terminal domain
91c4obtA_
not modelled 5.5 20
PDB header:isomerase
Chain: A: PDB Molecule:triosephosphate isomerase, cytosolic;
PDBTitle: crystal structure of arabidopsis thaliana cytosolic triose phosphate2 isomerase
92d1u6ra1
not modelled 5.3 14
Fold:Guanido kinase N-terminal domain
Superfamily:Guanido kinase N-terminal domain
Family:Guanido kinase N-terminal domain
93c5ounA_
not modelled 5.3 19
PDB header:hydrolase
Chain: A: PDB Molecule:ruvb-like protein 2;
PDBTitle: nmr solution structure of the external dii domain of rvb2 from2 saccharomyces cerevisiae
94d1i0ea1
not modelled 5.2 14
Fold:Guanido kinase N-terminal domain
Superfamily:Guanido kinase N-terminal domain
Family:Guanido kinase N-terminal domain
95c3wrwE_
not modelled 5.1 24
PDB header:transferase
Chain: E: PDB Molecule:tm-1 protein;
PDBTitle: crystal structure of the n-terminal domain of resistance protein
96d1qh4a1
not modelled 5.1 18
Fold:Guanido kinase N-terminal domain
Superfamily:Guanido kinase N-terminal domain
Family:Guanido kinase N-terminal domain

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