Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0750_(-)_842036_842281
DateFri Jul 26 01:50:32 BST 2019
Unique Job IDd5c9d0a24d8fcf10
SequenceVRAIVGDCVI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:23.883 Y:24.759 Z:29.311
Model (left) based on template d1yqha1
Top template information
Fold:Ferredoxin-like
Superfamily:MTH1187/YkoF-like
Family:MTH1187-like
Confidence and coverage
Confidence: 42.6% Coverage: 43%
35 residues ( 43% of your sequence) have been modelled with 42.6% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1yqha1



42.6 11
Fold:Ferredoxin-like
Superfamily:MTH1187/YkoF-like
Family:MTH1187-like
2d1vk8a_



37.4 20
Fold:Ferredoxin-like
Superfamily:MTH1187/YkoF-like
Family:MTH1187-like
3d2iboa1



36.8 11
Fold:Ferredoxin-like
Superfamily:MTH1187/YkoF-like
Family:MTH1187-like
4c4qysA_



35.8 42
PDB header:lyase
Chain: A: PDB Molecule:tryptophan synthase beta chain 2;
PDBTitle: trpb2 enzymes
5d1lxna_



24.1 17
Fold:Ferredoxin-like
Superfamily:MTH1187/YkoF-like
Family:MTH1187-like
6c2epiA_



22.3 23
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0045 protein mj1052;
PDBTitle: crystal structure pf hypothetical protein mj1052 from2 methanocaldococcus jannascii (form 2)
7d3clsd2



21.1 33
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:C-terminal domain of the electron transfer flavoprotein alpha subunit
8c4plaA_



17.3 34
PDB header:transferase,hydrolase
Chain: A: PDB Molecule:chimera protein of phosphatidylinositol 4-kinase type 2-
PDBTitle: crystal structure of phosphatidyl inositol 4-kinase ii alpha in2 complex with atp
9c6b4eC_



16.5 63
PDB header:transport protein
Chain: C: PDB Molecule:nucleoporin nup42;
PDBTitle: crystal structure of saccharomyces cerevisiae gle1 ctd-nup42 gbm2 complex
10c2lqtA_



15.0 18
PDB header:unknown function
Chain: A: PDB Molecule:coiled-coil-helix-coiled-coil-helix domain-containing
PDBTitle: solution structure of chchd7
11d1gnta_



14.4 27
Fold:Prismane protein-like
Superfamily:Prismane protein-like
Family:Hybrid cluster protein (prismane protein)
12c3ulcA_



12.4 47
PDB header:membrane protein
Chain: A: PDB Molecule:target of rapamycin complex 2 subunit avo1;
PDBTitle: crystal structure of the pleckstrin homology domain of saccharomyces2 cerevisiae avo1, a torc2 subunit, in the p3121 crystal form
13d2rh2a1



12.2 47
Fold:SH3-like barrel
Superfamily:Electron transport accessory proteins
Family:R67 dihydrofolate reductase
14d1efpa2



11.7 30
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:C-terminal domain of the electron transfer flavoprotein alpha subunit
15d1lxja_



9.6 17
Fold:Ferredoxin-like
Superfamily:MTH1187/YkoF-like
Family:MTH1187-like
16d2apoa2



9.5 50
Fold:Pseudouridine synthase
Superfamily:Pseudouridine synthase
Family:Pseudouridine synthase II TruB
17c4uedB_



9.4 28
PDB header:translation
Chain: B: PDB Molecule:eukaryotic translation factor 4e-binding protein 1;
PDBTitle: complex of human eif4e with the 4e binding protein 4e-bp1
18d1wura1



8.6 30
Fold:T-fold
Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like
Family:GTP cyclohydrolase I
19c1wm9D_



8.6 30
PDB header:hydrolase
Chain: D: PDB Molecule:gtp cyclohydrolase i;
PDBTitle: structure of gtp cyclohydrolase i from thermus thermophilus hb8
20c3seeA_



8.2 45
PDB header:sugar binding protein
Chain: A: PDB Molecule:hypothetical sugar binding protein;
PDBTitle: crystal structure of a putative sugar binding protein (bt_4411) from2 bacteroides thetaiotaomicron vpi-5482 at 1.25 a resolution
21c4ar1A_



not modelled 7.9 33
PDB header:hydrolase
Chain: A: PDB Molecule:colh protein;
PDBTitle: crystal structure of the peptidase domain of collagenase h from2 clostridium histolyticum at 2.01 angstrom resolution.
22c2n1dA_



not modelled 7.6 29
PDB header:protein binding
Chain: A: PDB Molecule:mrg/morf4l-binding protein;
PDBTitle: solution structure of the mrg15-mrgbp complex
23d1gnla_



not modelled 7.4 27
Fold:Prismane protein-like
Superfamily:Prismane protein-like
Family:Hybrid cluster protein (prismane protein)
24d1r3ea2



not modelled 7.4 41
Fold:Pseudouridine synthase
Superfamily:Pseudouridine synthase
Family:Pseudouridine synthase II TruB
25c1izlL_



not modelled 7.1 17
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii: subunit psbb;
PDBTitle: crystal structure of photosystem ii
26c4wcwB_



not modelled 7.0 50
PDB header:translation
Chain: B: PDB Molecule:ribosomal silencing factor rsfs;
PDBTitle: ribosomal silencing factor during starvation or stationary phase2 (rsfs) from mycobacterium tuberculosis
27d1k8wa5



not modelled 6.7 29
Fold:Pseudouridine synthase
Superfamily:Pseudouridine synthase
Family:Pseudouridine synthase II TruB
28d1efva2



not modelled 6.7 33
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:C-terminal domain of the electron transfer flavoprotein alpha subunit
29c1k8wA_



not modelled 6.5 36
PDB header:lyase/rna
Chain: A: PDB Molecule:trna pseudouridine synthase b;
PDBTitle: crystal structure of the e. coli pseudouridine synthase2 trub bound to a t stem-loop rna
30d1a8ra_



not modelled 6.4 20
Fold:T-fold
Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like
Family:GTP cyclohydrolase I
31c1sgvA_



not modelled 6.3 36
PDB header:lyase
Chain: A: PDB Molecule:trna pseudouridine synthase b;
PDBTitle: structure of trna psi55 pseudouridine synthase (trub)
32d2id1a1



not modelled 6.3 44
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Iojap/YbeB-like
33d2ey4a2



not modelled 6.2 36
Fold:Pseudouridine synthase
Superfamily:Pseudouridine synthase
Family:Pseudouridine synthase II TruB
34c5wk1L_



not modelled 6.2 38
PDB header:virus
Chain: L: PDB Molecule:capsid stabilizing protein;
PDBTitle: structure of the major capsid protein and the capsid stabilizing2 protein of the marine siphovirus tw1
35c3abqA_



not modelled 6.0 34
PDB header:lyase
Chain: A: PDB Molecule:ethanolamine ammonia-lyase heavy chain;
PDBTitle: crystal structure of ethanolamine ammonia-lyase from escherichia coli2 complexed with cn-cbl and 2-amino-1-propanol
36d1sgva2



not modelled 5.7 36
Fold:Pseudouridine synthase
Superfamily:Pseudouridine synthase
Family:Pseudouridine synthase II TruB
37c4uqfB_



not modelled 5.7 33
PDB header:hydrolase
Chain: B: PDB Molecule:gtp cyclohydrolase 1;
PDBTitle: crystal structure of listeria monocytogenes gtp cyclohydrolase i
38c2yy3B_



not modelled 5.7 33
PDB header:translation
Chain: B: PDB Molecule:elongation factor 1-beta;
PDBTitle: crystal structure of translation elongation factor ef-1 beta from2 pyrococcus horikoshii
39d2o5aa1



not modelled 5.6 50
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Iojap/YbeB-like
40d1wpla_



not modelled 5.6 33
Fold:T-fold
Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like
Family:GTP cyclohydrolase I
41c1is7F_



not modelled 5.6 33
PDB header:hydrolase/protein binding
Chain: F: PDB Molecule:gtp cyclohydrolase i;
PDBTitle: crystal structure of rat gtpchi/gfrp stimulatory complex
42c2lzsE_



not modelled 5.4 33
PDB header:protein transport
Chain: E: PDB Molecule:sec-independent protein translocase protein tata;
PDBTitle: tata oligomer
43c2bruB_



not modelled 5.3 28
PDB header:oxidoreductase
Chain: B: PDB Molecule:nad(p) transhydrogenase subunit alpha;
PDBTitle: complex of the domain i and domain iii of escherichia coli2 transhydrogenase
44c3upsA_



not modelled 5.3 50
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:iojap-like protein;
PDBTitle: crystal structure of iojap-like protein from zymomonas mobilis
45c3ed6B_



not modelled 5.3 27
PDB header:oxidoreductase
Chain: B: PDB Molecule:betaine aldehyde dehydrogenase;
PDBTitle: 1.7 angstrom resolution crystal structure of betaine aldehyde2 dehydrogenase (betb) from staphylococcus aureus

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