Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0755c_(PPE12)_848106_850043
DateFri Jul 26 01:50:33 BST 2019
Unique Job ID1c4e193929f9d1e3
SequenceMVGFAWLPPE ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:59.669 Y:72.050 Z:69.733
Model (left) based on template c5xfsB_
Top template information
PDB header:protein transport
Chain: B: PDB Molecule:ppe family protein ppe15;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 27%
173 residues ( 27% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Warning: 74% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5xfsB_
100.0 49
PDB header:protein transport
Chain: B: PDB Molecule:ppe family protein ppe15;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis
2c2g38B_
100.0 34
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:ppe family protein;
PDBTitle: a pe/ppe protein complex from mycobacterium tuberculosis
3d2g38b1
100.0 34
Fold:Ferritin-like
Superfamily:PE/PPE dimer-like
Family:PPE
4c4xy3A_
100.0 16
PDB header:protein transport
Chain: A: PDB Molecule:esx-1 secretion-associated protein espb;
PDBTitle: structure of esx-1 secreted protein espb
5c4wj2A_
98.9 20
PDB header:unknown function
Chain: A: PDB Molecule:antigen mtb48;
PDBTitle: mycobacterial protein
6c2vs0B_
98.1 15
PDB header:cell invasion
Chain: B: PDB Molecule:virulence factor esxa;
PDBTitle: structural analysis of homodimeric staphylococcal aureus2 virulence factor esxa
7c3gvmA_
97.9 11
PDB header:viral protein
Chain: A: PDB Molecule:putative uncharacterized protein sag1039;
PDBTitle: structure of the homodimeric wxg-100 family protein from streptococcus2 agalactiae
8c3zbhC_
97.8 14
PDB header:unknown function
Chain: C: PDB Molecule:esxa;
PDBTitle: geobacillus thermodenitrificans esxa crystal form i
9c4iogD_
97.8 17
PDB header:unknown function
Chain: D: PDB Molecule:secreted protein esxb;
PDBTitle: the crystal structure of a secreted protein esxb (wild-type, in p212 space group) from bacillus anthracis str. sterne
10d1wa8a1
97.5 19
Fold:Ferritin-like
Superfamily:EsxAB dimer-like
Family:ESAT-6 like
11c4lwsA_
96.5 14
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
12c4lwsB_
96.5 14
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
13d1wa8b1
96.3 23
Fold:Ferritin-like
Superfamily:EsxAB dimer-like
Family:ESAT-6 like
14c4i0xA_
95.3 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:esat-6-like protein mab_3112;
PDBTitle: crystal structure of the mycobacterum abscessus esxef (mab_3112-2 mab_3113) complex
15c2kg7B_
94.1 16
PDB header:unknown function
Chain: B: PDB Molecule:esat-6-like protein esxh;
PDBTitle: structure and features of the complex formed by the tuberculosis2 virulence factors rv0287 and rv0288
16d1ui5a2
69.6 24
Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
17c4i0xJ_
65.4 27
PDB header:structural genomics, unknown function
Chain: J: PDB Molecule:esat-6-like protein mab_3113;
PDBTitle: crystal structure of the mycobacterum abscessus esxef (mab_3112-2 mab_3113) complex
18d1xkna_
62.3 16
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Porphyromonas-type peptidylarginine deiminase
19c2lyyB_
31.9 13
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: nmr structure of the protein nb7890a from shewanella sp
20d2ewoa1
27.6 28
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Porphyromonas-type peptidylarginine deiminase
21c2kg7A_
not modelled 24.4 26
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein esxg (pe family protein);
PDBTitle: structure and features of the complex formed by the tuberculosis2 virulence factors rv0287 and rv0288
22d2jera1
not modelled 23.9 26
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Porphyromonas-type peptidylarginine deiminase
23c2iu1A_
not modelled 23.5 28
PDB header:transcription
Chain: A: PDB Molecule:eukaryotic translation initiation factor 5;
PDBTitle: crystal structure of eif5 c-terminal domain
24d1vkpa_
not modelled 22.6 24
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Porphyromonas-type peptidylarginine deiminase
25c2jerG_
not modelled 22.5 26
PDB header:hydrolase
Chain: G: PDB Molecule:agmatine deiminase;
PDBTitle: agmatine deiminase of enterococcus faecalis catalyzing its2 reaction.
26c5frgA_
not modelled 20.9 63
PDB header:protein binding
Chain: A: PDB Molecule:formin-binding protein 1-like;
PDBTitle: the nmr structure of the cdc42-interacting region of toca1
27c4yk2B_
not modelled 19.3 18
PDB header:protein binding
Chain: B: PDB Molecule:bartonella effector protein (bep) substrate of virb t4ss;
PDBTitle: crystal structure of the bid domain of bep9 from bartonella2 clarridgeiae
28c2fulE_
not modelled 18.7 39
PDB header:translation
Chain: E: PDB Molecule:eukaryotic translation initiation factor 5;
PDBTitle: crystal structure of the c-terminal domain of s. cerevisiae eif5
29c4yk3B_
not modelled 18.2 23
PDB header:protein binding
Chain: B: PDB Molecule:bepe protein;
PDBTitle: crystal structure of the bid domain of bepe from bartonella henselae
30c3jywF_
not modelled 17.6 48
PDB header:ribosome
Chain: F: PDB Molecule:60s ribosomal protein l7(a);
PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution
31c2l5bA_
not modelled 17.5 53
PDB header:apoptosis
Chain: A: PDB Molecule:activator of apoptosis harakiri;
PDBTitle: solution structure of the transmembrane domain of bcl-2 member2 harakiri in micelles
32c1bkvA_
not modelled 16.7 31
PDB header:structural protein
Chain: A: PDB Molecule:t3-785;
PDBTitle: collagen
33c1bkvB_
not modelled 15.4 31
PDB header:structural protein
Chain: B: PDB Molecule:t3-785;
PDBTitle: collagen
34c1bkvC_
not modelled 15.4 31
PDB header:structural protein
Chain: C: PDB Molecule:t3-785;
PDBTitle: collagen
35c6b2wB_
not modelled 14.6 11
PDB header:hydrolase
Chain: B: PDB Molecule:putative peptidyl-arginine deiminase family protein;
PDBTitle: c. jejuni c315s agmatine deiminase with substrate bound
36c2ke4A_
not modelled 13.8 63
PDB header:membrane protein
Chain: A: PDB Molecule:cdc42-interacting protein 4;
PDBTitle: the nmr structure of the tc10 and cdc42 interacting domain2 of cip4
37d1paqa_
not modelled 13.4 20
Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:MIF4G domain-like
38c1paqA_
not modelled 13.4 20
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor eif-2b epsilon
PDBTitle: crystal structure of the catalytic fragment of eukaryotic2 initiation factor 2b epsilon
39c2l5aA_
not modelled 12.9 22
PDB header:nuclear protein
Chain: A: PDB Molecule:histone h3-like centromeric protein cse4, protein scm3,
PDBTitle: structural basis for recognition of centromere specific histone h32 variant by nonhistone scm3
40c4el8A_
not modelled 12.4 38
PDB header:hydrolase
Chain: A: PDB Molecule:glycoside hydrolase family 48;
PDBTitle: the unliganded structure of c.bescii cela gh48 module
41c3h6pB_
not modelled 11.5 36
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:esat-6 like protein esxs;
PDBTitle: crystal structure of rv3019c-rv3020c from mycobacterium tuberculosis
42c5lc5a_
not modelled 10.5 38
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh-ubiquinone oxidoreductase chain 3;
PDBTitle: structure of mammalian respiratory complex i, class2
43c3juiA_
not modelled 10.2 23
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor eif-2b subunit epsilon;
PDBTitle: crystal structure of the c-terminal domain of human translation2 initiation factor eif2b epsilon subunit
44c2hzkB_
not modelled 10.2 14
PDB header:ligand binding, transport protein
Chain: B: PDB Molecule:trap-t family sorbitol/mannitol transporter, periplasmic
PDBTitle: crystal structures of a sodium-alpha-keto acid binding subunit from a2 trap transporter in its open form
45c4kkkA_
not modelled 9.9 31
PDB header:hydrolase
Chain: A: PDB Molecule:exoglucanase s;
PDBTitle: complex structure of catalytic domain of clostridium cellulovorans2 exgs and cellotetraose
46c3ttlB_
not modelled 9.2 15
PDB header:transport protein
Chain: B: PDB Molecule:polyamine transport protein;
PDBTitle: crystal structure of apo-spue
47d1zbra1
not modelled 9.1 17
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Porphyromonas-type peptidylarginine deiminase
48c5lzkB_
not modelled 9.0 9
PDB header:structural genomics
Chain: B: PDB Molecule:protein fam83b;
PDBTitle: structure of the domain of unknown function duf1669 from human fam83b
49c1l2aD_
not modelled 8.9 19
PDB header:hydrolase
Chain: D: PDB Molecule:cellobiohydrolase;
PDBTitle: the crystal structure and catalytic mechanism of2 cellobiohydrolase cels, the major enzymatic component of3 the clostridium thermocellum cellulosome
50d1l1ya_
not modelled 8.9 19
Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Cellulases catalytic domain
51c4fusA_
not modelled 8.8 44
PDB header:hydrolase
Chain: A: PDB Molecule:rtx toxins and related ca2+-binding protein;
PDBTitle: the x-ray structure of hahella chejuensis family 48 glycosyl hydrolase
52c3zfsA_
not modelled 8.8 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:f420-reducing hydrogenase, subunit alpha;
PDBTitle: cryo-em structure of the f420-reducing nife-hydrogenase from a2 methanogenic archaeon with bound substrate
53c4xfeA_
not modelled 8.2 14
PDB header:transport protein
Chain: A: PDB Molecule:trap dicarboxylate transporter subunit dctp;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 pseudomonas putida f1 (pput_1203), target efi-500184, with bound d-3 glucuronate
54c2ahmG_
not modelled 8.2 26
PDB header:viral protein, replication
Chain: G: PDB Molecule:replicase polyprotein 1ab, heavy chain;
PDBTitle: crystal structure of sars-cov super complex of non-structural2 proteins: the hexadecamer
55c5i4rA_
not modelled 8.0 57
PDB header:toxin/antitoxin
Chain: A: PDB Molecule:contact-dependent inhibitor a;
PDBTitle: contact-dependent inhibition system from escherichia coli nc101 -2 ternary cdia/cdii/ef-tu complex (trypsin-modified)
56d1jyaa_
not modelled 7.9 23
Fold:Secretion chaperone-like
Superfamily:Type III secretory system chaperone-like
Family:Type III secretory system chaperone
57c2dbfA_
not modelled 7.8 27
PDB header:signaling protein
Chain: A: PDB Molecule:nuclear factor nf-kappa-b p105 subunit;
PDBTitle: solution structure of the death domain in human nuclear2 factor nf-kappa-b p105 subunit
58c3qthA_
not modelled 7.8 11
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a dinb-like protein (cps_3021) from colwellia2 psychrerythraea 34h at 2.20 a resolution
59c4jjjA_
not modelled 7.7 25
PDB header:hydrolase
Chain: A: PDB Molecule:cellulose 1,4-beta-cellobiosidase;
PDBTitle: the structure of t. fusca gh48 d224n mutant
60c1gk9A_
not modelled 7.7 18
PDB header:antibiotic resistance
Chain: A: PDB Molecule:penicillin g acylase alpha subunit;
PDBTitle: crystal structures of penicillin acylase enzyme-substrate2 complexes: structural insights into the catalytic mechanism
61d2cmua1
not modelled 7.5 14
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Porphyromonas-type peptidylarginine deiminase
62c2kwuA_
not modelled 7.3 38
PDB header:protein binding/signaling protein
Chain: A: PDB Molecule:dna polymerase iota;
PDBTitle: solution structure of ubm2 of murine polymerase iota in complex with2 ubiquitin
63c3j21Y_
not modelled 7.2 31
PDB header:ribosome
Chain: Y: PDB Molecule:50s ribosomal protein l30p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
64c5hl8B_
not modelled 7.2 18
PDB header:protein transport
Chain: B: PDB Molecule:type ii secretion system protein l;
PDBTitle: 1.93 angstrom resolution crystal structure of a pullulanase-specific2 type ii secretion system integral cytoplasmic membrane protein gspl3 (c-terminal fragment; residues 309-397) from klebsiella pneumoniae4 subsp. pneumoniae ntuh-k2044
65d1g9ga_
not modelled 7.2 21
Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Cellulases catalytic domain
66c4nn3A_
not modelled 7.1 16
PDB header:transport protein
Chain: A: PDB Molecule:trap dicarboxylate transporter, dctp subunit;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 desulfovibrio salexigens (desal_2161), target efi-510109, with bound3 orotic acid
67c3ub0D_
not modelled 7.1 17
PDB header:replication
Chain: D: PDB Molecule:non-structural protein 6, nsp6,;
PDBTitle: crystal structure of the nonstructural protein 7 and 8 complex of2 feline coronavirus
68c3j3bF_
not modelled 7.1 38
PDB header:ribosome
Chain: F: PDB Molecule:60s ribosomal protein l7;
PDBTitle: structure of the human 60s ribosomal proteins
69c2kp7A_
not modelled 7.0 27
PDB header:hydrolase
Chain: A: PDB Molecule:crossover junction endonuclease mus81;
PDBTitle: solution nmr structure of the mus81 n-terminal hhh.2 northeast structural genomics consortium target mmt1a
70c5ec0A_
not modelled 6.9 20
PDB header:structural protein
Chain: A: PDB Molecule:alp7a;
PDBTitle: crystal structure of actin-like protein alp7a
71c3r5zB_
not modelled 6.7 14
PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure of a deazaflavin-dependent reductase from nocardia2 farcinica, with co-factor f420
72c2wybA_
not modelled 6.7 11
PDB header:hydrolase
Chain: A: PDB Molecule:acyl-homoserine lactone acylase pvdq subunit
PDBTitle: the quorum quenching n-acyl homoserine lactone acylase pvdq2 with a covalently bound dodecanoic acid
73c6o9l6_
not modelled 6.7 40
PDB header:transcription/dna
Chain: 6: PDB Molecule:general transcription factor iih subunit 2;
PDBTitle: human holo-pic in the closed state
74c4n91A_
not modelled 6.4 13
PDB header:transport protein
Chain: A: PDB Molecule:trap dicarboxylate transporter, dctp subunit;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 anaerococcus prevotii dsm 20548 (apre_1383), target efi-510023, with3 bound alpha/beta d-glucuronate
75c3j39F_
not modelled 6.4 38
PDB header:ribosome
Chain: F: PDB Molecule:60s ribosomal protein l7;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
76c2zdjA_
not modelled 6.2 38
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ttma177;
PDBTitle: crystal structure of ttma177, a hypothetical protein from2 thermus thermophilus phage tma
77c3fy6A_
not modelled 6.2 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:integron cassette protein;
PDBTitle: structure from the mobile metagenome of v. cholerae. integron cassette2 protein vch_cass3
78c2np3A_
not modelled 6.1 18
PDB header:transcription
Chain: A: PDB Molecule:putative tetr-family regulator;
PDBTitle: crystal structure of tetr-family regulator (sco0857) from streptomyces2 coelicolor a3.
79c2nvjA_
not modelled 6.1 30
PDB header:hydrolase
Chain: A: PDB Molecule:25mer peptide from vacuolar atp synthase subunit
PDBTitle: nmr structures of transmembrane segment from subunit a from2 the yeast proton v-atpase
80c4yk1A_
not modelled 6.1 7
PDB header:protein binding
Chain: A: PDB Molecule:bartonella effector protein (bep) substrate of virb t4ss;
PDBTitle: crystal structure of the bid domain of bep6 from bartonella rochalimae
81c4i6jB_
not modelled 6.0 11
PDB header:transcription
Chain: B: PDB Molecule:f-box/lrr-repeat protein 3;
PDBTitle: a ubiquitin ligase-substrate complex
82c1d1dA_
not modelled 6.0 12
PDB header:viral protein
Chain: A: PDB Molecule:protein (capsid protein);
PDBTitle: nmr solution structure of the capsid protein from rous2 sarcoma virus
83c4c5eG_
not modelled 5.9 39
PDB header:transcription
Chain: G: PDB Molecule:polycomb protein pho;
PDBTitle: crystal structure of the minimal pho-sfmbt complex (p21 spacegroup)
84c4c5eH_
not modelled 5.9 39
PDB header:transcription
Chain: H: PDB Molecule:polycomb protein pho;
PDBTitle: crystal structure of the minimal pho-sfmbt complex (p21 spacegroup)
85d1fcda3
not modelled 5.9 23
Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
86d1luaa2
not modelled 5.9 24
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Methylene-tetrahydromethanopterin dehydrogenase
87c2jtwA_
not modelled 5.8 38
PDB header:membrane protein
Chain: A: PDB Molecule:transmembrane helix 7 of yeast vatpase;
PDBTitle: solution structure of tm7 bound to dpc micelles
88c2rpwX_
not modelled 5.8 38
PDB header:transport protein
Chain: X: PDB Molecule:25 meric peptide from v-type proton atpase
PDBTitle: structure of a peptide derived from h+-v-atpase subunit a
89d2apla1
not modelled 5.8 12
Fold:PG0816-like
Superfamily:PG0816-like
Family:PG0816-like
90c4gl0A_
not modelled 5.7 16
PDB header:transport protein
Chain: A: PDB Molecule:lmo0810 protein;
PDBTitle: putative spermidine/putrescine abc transporter from listeria2 monocytogenes
91c3p8cF_
not modelled 5.7 22
PDB header:protein binding
Chain: F: PDB Molecule:abl interactor 2;
PDBTitle: structure and control of the actin regulatory wave complex
92d1r76a_
not modelled 5.6 22
Fold:alpha/alpha toroid
Superfamily:Family 10 polysaccharide lyase
Family:Family 10 polysaccharide lyase
93c4y9iA_
not modelled 5.5 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:mycobacterium tuberculosis paralogous family 11;
PDBTitle: structure of f420-h2 dependent reductase (fdr-a) msmeg_2027
94c4wpyA_
not modelled 5.5 20
PDB header:de novo protein
Chain: A: PDB Molecule:protein dl-rv1738;
PDBTitle: racemic crystal structure of rv1738 from mycobacterium tuberculosis2 (form-ii)
95c3n6xA_
not modelled 5.5 13
PDB header:ligase
Chain: A: PDB Molecule:putative glutathionylspermidine synthase;
PDBTitle: crystal structure of a putative glutathionylspermidine synthase2 (mfla_0391) from methylobacillus flagellatus kt at 2.35 a resolution
96d1saza2
not modelled 5.5 16
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Acetokinase-like
97c3izce_
not modelled 5.5 19
PDB header:ribosome
Chain: E: PDB Molecule:60s ribosomal protein rpl11 (l5p);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
98c3mopC_
not modelled 5.4 38
PDB header:signaling protein, immune system
Chain: C: PDB Molecule:myeloid differentiation primary response protein myd88;
PDBTitle: the ternary death domain complex of myd88, irak4, and irak2
99c1d0rA_
not modelled 5.3 40
PDB header:hormone/growth factor
Chain: A: PDB Molecule:glucagon-like peptide-1-(7-36)-amide;
PDBTitle: solution structure of glucagon-like peptide-1-(7-36)-amide in2 trifluoroethanol/water

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