Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0759c_(-)_853828_854160
DateFri Jul 26 01:50:34 BST 2019
Unique Job ID32bf619bb8e85a65
SequenceVAFLTIEPMT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:34.360 Y:31.492 Z:38.919
Model (left) based on template c3p0tB_
Top template information
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of an hit-like protein from mycobacterium2 paratuberculosis
Confidence and coverage
Confidence:100.0% Coverage:100%
110 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3p0tB_



100.0 86
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of an hit-like protein from mycobacterium2 paratuberculosis
2c3i24B_



100.0 18
PDB header:hydrolase
Chain: B: PDB Molecule:hit family hydrolase;
PDBTitle: crystal structure of a hit family hydrolase protein from vibrio2 fischeri. northeast structural genomics consortium target id vfr176
3c3oheA_



100.0 18
PDB header:hydrolase
Chain: A: PDB Molecule:histidine triad (hit) protein;
PDBTitle: crystal structure of a histidine triad protein (maqu_1709) from2 marinobacter aquaeolei vt8 at 1.20 a resolution
4c3l7xA_



100.0 25
PDB header:cell cycle
Chain: A: PDB Molecule:putative hit-like protein involved in cell-cycle
PDBTitle: the crystal structure of smu.412c from streptococcus mutans ua159
5c3nrdB_



100.0 19
PDB header:nucleotide binding protein
Chain: B: PDB Molecule:histidine triad (hit) protein;
PDBTitle: crystal structure of a histidine triad (hit) protein (smc02904) from2 sinorhizobium meliloti 1021 at 2.06 a resolution
6c3i4sB_



100.0 13
PDB header:hydrolase
Chain: B: PDB Molecule:histidine triad protein;
PDBTitle: crystal structure of histidine triad protein blr8122 from2 bradyrhizobium japonicum
7d2oika1



100.0 14
Fold:HIT-like
Superfamily:HIT-like
Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins
8c5cs2A_



100.0 23
PDB header:hydrolase
Chain: A: PDB Molecule:histidine triad protein;
PDBTitle: crystal structure of plasmodium falciparum diadenosine triphosphate2 hydrolase in complex with cyclomarin a
9c3ksvA_



100.0 22
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: hypothetical protein from leishmania major
10c6iq1A_



100.0 20
PDB header:hydrolase
Chain: A: PDB Molecule:adenosine 5'-monophosphoramidase;
PDBTitle: crystal structure of histidine triad nucleotide-binding protein from2 candida albicans
11d1fita_



99.9 24
Fold:HIT-like
Superfamily:HIT-like
Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins
12c3anoA_



99.9 20
PDB header:transferase
Chain: A: PDB Molecule:ap-4-a phosphorylase;
PDBTitle: crystal structure of a novel diadenosine 5',5'''-p1,p4-tetraphosphate2 phosphorylase from mycobacterium tuberculosis h37rv
13c3imiB_



99.9 24
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hit family protein;
PDBTitle: 2.01 angstrom resolution crystal structure of a hit family protein2 from bacillus anthracis str. 'ames ancestor'
14c1emsB_



99.9 26
PDB header:antitumor protein
Chain: B: PDB Molecule:nit-fragile histidine triad fusion protein;
PDBTitle: crystal structure of the c. elegans nitfhit protein
15c2eo4A_



99.9 25
PDB header:hydrolase
Chain: A: PDB Molecule:150aa long hypothetical histidine triad nucleotide-binding
PDBTitle: crystal structure of hypothetical histidine triad nucleotide-binding2 protein st2152 from sulfolobus tokodaii strain7
16d1emsa1



99.9 26
Fold:HIT-like
Superfamily:HIT-like
Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins
17c3o0mB_



99.9 32
PDB header:hydrolase
Chain: B: PDB Molecule:hit family protein;
PDBTitle: crystal structure of a zn-bound histidine triad family protein from2 mycobacterium smegmatis
18c3r6fA_



99.9 21
PDB header:hydrolase
Chain: A: PDB Molecule:hit family protein;
PDBTitle: crystal structure of a zinc-containing hit family protein from2 encephalitozoon cuniculi
19d1y23a_



99.9 26
Fold:HIT-like
Superfamily:HIT-like
Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins
20c3lb5B_



99.9 35
PDB header:cell cycle
Chain: B: PDB Molecule:hit-like protein involved in cell-cycle regulation;
PDBTitle: crystal structure of hit-like protein involved in cell-cycle2 regulation from bartonella henselae with unknown ligand
21c4incA_



not modelled 99.9 21
PDB header:hydrolase
Chain: A: PDB Molecule:histidine triad nucleotide-binding protein 2,
PDBTitle: human histidine triad nucleotide binding protein 2
22d1rzya_



not modelled 99.8 24
Fold:HIT-like
Superfamily:HIT-like
Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins
23d1kpfa_



not modelled 99.8 23
Fold:HIT-like
Superfamily:HIT-like
Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins
24d1z84a2



not modelled 99.8 12
Fold:HIT-like
Superfamily:HIT-like
Family:Hexose-1-phosphate uridylyltransferase
25c4eguA_



not modelled 99.8 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:histidine triad (hit) protein;
PDBTitle: 0.95a resolution structure of a histidine triad protein from2 clostridium difficile
26c6d6jB_



not modelled 99.8 22
PDB header:hydrolase
Chain: B: PDB Molecule:hit family hydrolase;
PDBTitle: crystal structure of hit family hydrolase from legionella pneumophila2 philadelphia 1
27c3n1tE_



not modelled 99.8 22
PDB header:hydrolase
Chain: E: PDB Molecule:hit-like protein hint;
PDBTitle: crystal structure of the h101a mutant echint gmp complex
28d1xqua_



not modelled 99.8 19
Fold:HIT-like
Superfamily:HIT-like
Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins
29c1xquA_



not modelled 99.8 19
PDB header:hydrolase
Chain: A: PDB Molecule:hit family hydrolase;
PDBTitle: hit family hydrolase from clostridium thermocellum cth-393
30c3oj7A_



not modelled 99.8 21
PDB header:metal binding protein
Chain: A: PDB Molecule:putative histidine triad family protein;
PDBTitle: crystal structure of a histidine triad family protein from entamoeba2 histolytica, bound to sulfate
31c4q61J_



not modelled 99.8 26
PDB header:cell cycle
Chain: J: PDB Molecule:uncharacterized hit-like protein hp_0404;
PDBTitle: hit like protein from helicobacter pylori 26695
32d1guqa2



not modelled 99.8 14
Fold:HIT-like
Superfamily:HIT-like
Family:Hexose-1-phosphate uridylyltransferase
33c1zwjA_



not modelled 99.7 12
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative galactose-1-phosphate uridyl transferase;
PDBTitle: x-ray structure of galt-like protein from arabidopsis thaliana2 at5g18200
34c1gupC_



not modelled 99.6 15
PDB header:nucleotidyltransferase
Chain: C: PDB Molecule:galactose-1-phosphate uridylyltransferase;
PDBTitle: structure of nucleotidyltransferase complexed with udp-2 galactose
35c5in3A_



not modelled 99.6 18
PDB header:transferase
Chain: A: PDB Molecule:galactose-1-phosphate uridylyltransferase;
PDBTitle: crystal structure of glucose-1-phosphate bound nucleotidylated human2 galactose-1-phosphate uridylyltransferase
36c4ndgB_



not modelled 99.6 20
PDB header:dna binding protein/rna/dna
Chain: B: PDB Molecule:aprataxin;
PDBTitle: human aprataxin (aptx) bound to rna-dna and zn - adenosine vanadate2 transition state mimic complex
37c3splC_



not modelled 99.4 19
PDB header:hydrolase/dna
Chain: C: PDB Molecule:aprataxin-like protein;
PDBTitle: crystal structure of aprataxin ortholog hnt3 in complex with dna and2 amp
38c4i5wA_



not modelled 99.3 16
PDB header:transferase
Chain: A: PDB Molecule:5',5'''-p-1,p-4-tetraphosphate phosphorylase 2;
PDBTitle: crystal structure of yeast ap4a phosphorylase apa2 in complex with amp
39c3jb9c_



not modelled 99.2 15
PDB header:rna binding protein/rna
Chain: C: PDB Molecule:u5 snrna;
PDBTitle: cryo-em structure of the yeast spliceosome at 3.6 angstrom resolution
40d1z84a1



not modelled 99.1 14
Fold:HIT-like
Superfamily:HIT-like
Family:Hexose-1-phosphate uridylyltransferase
41c4qvuA_



not modelled 98.7 11
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf4931 family protein (bce0241) from bacillus2 cereus atcc 10987 at 2.65 a resolution
42c6id1U_



not modelled 98.7 14
PDB header:splicing
Chain: U: PDB Molecule:cwf19-like protein 2;
PDBTitle: cryo-em structure of a human intron lariat spliceosome after prp432 loaded (ils2 complex) at 2.9 angstrom resolution
43d3bl9a1



not modelled 98.1 12
Fold:HIT-like
Superfamily:HIT-like
Family:mRNA decapping enzyme DcpS C-terminal domain
44d1vlra1



not modelled 98.0 12
Fold:HIT-like
Superfamily:HIT-like
Family:mRNA decapping enzyme DcpS C-terminal domain
45c3bl9B_



not modelled 97.9 12
PDB header:hydrolase
Chain: B: PDB Molecule:scavenger mrna-decapping enzyme dcps;
PDBTitle: synthetic gene encoded dcps bound to inhibitor dg157493
46c6gbsB_



not modelled 97.5 10
PDB header:hydrolase
Chain: B: PDB Molecule:putative mrna decapping protein;
PDBTitle: crystal structure of the c. themophilum scavenger decapping enzyme2 dcps apo form
47c1xmlA_



not modelled 97.5 12
PDB header:chaperone
Chain: A: PDB Molecule:heat shock-like protein 1;
PDBTitle: structure of human dcps
48c5bv3C_



not modelled 97.5 10
PDB header:hydrolase
Chain: C: PDB Molecule:m7gpppx diphosphatase;
PDBTitle: yeast scavenger decapping enzyme in complex with m7gdp
49d1guqa1



not modelled 95.4 7
Fold:HIT-like
Superfamily:HIT-like
Family:Hexose-1-phosphate uridylyltransferase
50c4lvjA_



not modelled 87.3 11
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:plasmid recombination enzyme;
PDBTitle: mobm relaxase domain (mobv; mob_pre) bound to plasmid pmv158 orit dna2 (22nt). mn-bound crystal structure at ph 5.5
51d2pofa1



not modelled 83.7 18
Fold:HIT-like
Superfamily:HIT-like
Family:CDH-like
52c3csqC_



not modelled 44.3 21
PDB header:hydrolase
Chain: C: PDB Molecule:morphogenesis protein 1;
PDBTitle: crystal and cryoem structural studies of a cell wall2 degrading enzyme in the bacteriophage phi29 tail
53c3sdsA_



not modelled 43.5 13
PDB header:transferase
Chain: A: PDB Molecule:ornithine carbamoyltransferase, mitochondrial;
PDBTitle: crystal structure of a mitochondrial ornithine carbamoyltransferase2 from coccidioides immitis
54d1mg4a_



not modelled 39.4 6
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Doublecortin (DC)
Family:Doublecortin (DC)
55c4euvA_



not modelled 35.1 11
PDB header:signaling protein
Chain: A: PDB Molecule:peld;
PDBTitle: crystal structure of peld 158-ct from pseudomonas aeruginosa pao1, in2 complex with c-di-gmp, form 1
56d2b7oa1



not modelled 32.2 15
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class-II DAHP synthetase
57d1uf0a_



not modelled 31.4 6
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Doublecortin (DC)
Family:Doublecortin (DC)
58c5ip4E_



not modelled 29.1 3
PDB header:transferase
Chain: E: PDB Molecule:neuronal migration protein doublecortin;
PDBTitle: x-ray structure of the c-terminal domain of human doublecortin
59c6bmcA_



not modelled 26.8 19
PDB header:transferase
Chain: A: PDB Molecule:phospho-2-dehydro-3-deoxyheptonate aldolase;
PDBTitle: the structure of a dimeric type ii dah7ps associated with pyocyanin2 biosynthesis in pseudomonas aeruginosa
60c3l6tB_



not modelled 25.7 24
PDB header:hydrolase
Chain: B: PDB Molecule:mobilization protein trai;
PDBTitle: crystal structure of an n-terminal mutant of the plasmid pcu1 trai2 relaxase domain
61c3txxD_



not modelled 24.8 11
PDB header:transferase
Chain: D: PDB Molecule:putrescine carbamoyltransferase;
PDBTitle: crystal structure of putrescine transcarbamylase from enterococcus2 faecalis
62d1vlva1



not modelled 21.9 9
Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
63c4atuI_



not modelled 21.8 9
PDB header:hydrolase
Chain: I: PDB Molecule:neuronal migration protein doublecortin;
PDBTitle: human doublecortin n-dc repeat plus linker, and tubulin (2xrp) docked2 into an 8a cryo-em map of doublecortin-stabilised microtubules3 reconstructed in absence of kinesin
64d1omha_



not modelled 19.9 21
Fold:Origin of replication-binding domain, RBD-like
Superfamily:Origin of replication-binding domain, RBD-like
Family:Relaxase domain
65d1mjda_



not modelled 19.8 8
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Doublecortin (DC)
Family:Doublecortin (DC)
66c4dmzB_



not modelled 18.8 11
PDB header:nucleotide-binding protein
Chain: B: PDB Molecule:putative uncharacterized protein peld;
PDBTitle: peld 156-455 from pseudomonas aeruginosa pa14, apo form
67d1p4da_



not modelled 18.0 50
Fold:Origin of replication-binding domain, RBD-like
Superfamily:Origin of replication-binding domain, RBD-like
Family:Relaxase domain
68d1dxha1



not modelled 17.7 7
Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
69c5uxmA_



not modelled 17.6 18
PDB header:transferase
Chain: A: PDB Molecule:phospho-2-dehydro-3-deoxyheptonate aldolase;
PDBTitle: type ii dah7ps from pseudomonas aeruginosa with trp bound
70d1duvg1



not modelled 17.0 5
Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
71c3ezuA_



not modelled 16.6 17
PDB header:signaling protein
Chain: A: PDB Molecule:ggdef domain protein;
PDBTitle: crystal structure of multidomain protein of unknown function with2 ggdef-domain (np_951600.1) from geobacter sulfurreducens at 1.95 a3 resolution
72c2dnfA_



not modelled 16.5 14
PDB header:protein binding
Chain: A: PDB Molecule:doublecortin domain-containing protein 2;
PDBTitle: solution structure of rsgi ruh-062, a dcx domain from human
73d1ml4a1



not modelled 15.6 7
Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
74d1hska2



not modelled 14.4 18
Fold:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
Superfamily:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
Family:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
75d1pvva1



not modelled 13.4 2
Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
76c6cslA_



not modelled 13.3 35
PDB header:metal binding protein
Chain: A: PDB Molecule:histidine triad protein d;
PDBTitle: pneumococcal phtd protein 269-339 fragment with bound zn(ii)
77d2cs7a1



not modelled 12.8 27
Fold:IL8-like
Superfamily:PhtA domain-like
Family:PhtA domain-like
78c5nnqA_



not modelled 12.1 9
PDB header:transferase
Chain: A: PDB Molecule:ctatc;
PDBTitle: aspartate transcarbamoylase from chaetomium thermophilum cad-like2 bound to carbamoyl phosphate
79d2at2a1



not modelled 11.4 4
Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
80c3rcnA_



not modelled 11.3 11
PDB header:hydrolase
Chain: A: PDB Molecule:beta-n-acetylhexosaminidase;
PDBTitle: crystal structure of beta-n-acetylhexosaminidase from arthrobacter2 aurescens
81c5hudA_



not modelled 11.3 16
PDB header:transferase/isomerase
Chain: A: PDB Molecule:3-deoxy-d-arabino-heptulosonate 7-phosphate (dahp)
PDBTitle: non-covalent complex of and dahp synthase and chorismate mutase from2 corynebacterium glutamicum with bound transition state analog
82c4jayC_



not modelled 10.3 21
PDB header:oxidoreductase
Chain: C: PDB Molecule:udp-n-acetylenolpyruvoylglucosamine reductase;
PDBTitle: crystal structure of p. aeruginosa murb in complex with nadp+
83c2ef0A_



not modelled 9.6 4
PDB header:transferase
Chain: A: PDB Molecule:ornithine carbamoyltransferase;
PDBTitle: crystal structure of ornithine carbamoyltransferase from thermus2 thermophilus
84d1uxya2



not modelled 9.1 21
Fold:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
Superfamily:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
Family:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
85d1ekxa1



not modelled 9.1 7
Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
86c1mbbA_



not modelled 9.0 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:uridine diphospho-n-acetylenolpyruvylglucosamine
PDBTitle: oxidoreductase
87d1tuga1



not modelled 8.9 7
Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
88c5ilqA_



not modelled 8.8 9
PDB header:transferase
Chain: A: PDB Molecule:aspartate carbamoyltransferase;
PDBTitle: crystal structure of truncated unliganded aspartate transcarbamoylase2 from plasmodium falciparum
89c1ml4A_



not modelled 8.6 7
PDB header:transferase
Chain: A: PDB Molecule:aspartate transcarbamoylase;
PDBTitle: the pala-liganded aspartate transcarbamoylase catalytic subunit from2 pyrococcus abyssi
90c3j4rA_



not modelled 8.4 11
PDB header:transferase
Chain: A: PDB Molecule:a-kinase anchor protein 18;
PDBTitle: pseudo-atomic model of the akap18-pka complex in a linear conformation2 derived from electron microscopy
91c5g1oF_



not modelled 8.0 13
PDB header:transferase
Chain: F: PDB Molecule:cad protein;
PDBTitle: aspartate transcarbamoylase domain of human cad in apo form
92c5n6yC_



not modelled 7.9 9
PDB header:oxidoreductase
Chain: C: PDB Molecule:nitrogenase vanadium-iron protein delta chain;
PDBTitle: azotobacter vinelandii vanadium nitrogenase
93c3sluB_



not modelled 7.7 20
PDB header:hydrolase
Chain: B: PDB Molecule:m23 peptidase domain protein;
PDBTitle: crystal structure of nmb0315
94d1otha1



not modelled 7.5 7
Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
95c6b4aB_



not modelled 7.2 9
PDB header:structural protein
Chain: B: PDB Molecule:doublecortin;
PDBTitle: crystal structure of the c-terminal domain of doublecortin (tgdcx)2 from toxoplasma gondii me49
96c1ortD_



not modelled 7.1 7
PDB header:transferase
Chain: D: PDB Molecule:ornithine transcarbamoylase;
PDBTitle: ornithine transcarbamoylase from pseudomonas aeruginosa
97d1r3na2



not modelled 7.1 16
Fold:Ferredoxin-like
Superfamily:Bacterial exopeptidase dimerisation domain
Family:Bacterial exopeptidase dimerisation domain
98c4iv5E_



not modelled 7.1 7
PDB header:transferase
Chain: E: PDB Molecule:aspartate carbamoyltransferase, putative;
PDBTitle: x-ray crystal structure of a putative aspartate carbamoyltransferase2 from trypanosoma cruzi
99d1nc7a_



not modelled 7.0 18
Fold:Hypothetical protein TM1070
Superfamily:Hypothetical protein TM1070
Family:Hypothetical protein TM1070

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite