Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0763c_(-)_856476_856682
DateFri Jul 26 01:50:34 BST 2019
Unique Job ID9b725e8fe8c70634
SequenceMGYRVEADRD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:26.568 Y:30.099 Z:36.487
Model (left) based on template c4id8A_
Top template information
PDB header:electron transport
Chain: A: PDB Molecule:putative ferredoxin;
PDBTitle: the crystal structure of a [3fe-4s] ferredoxin associated with2 cyp194a4 from r. palustris haa2
Confidence and coverage
Confidence: 99.6% Coverage: 94%
64 residues ( 94% of your sequence) have been modelled with 99.6% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4id8A_



99.6 31
PDB header:electron transport
Chain: A: PDB Molecule:putative ferredoxin;
PDBTitle: the crystal structure of a [3fe-4s] ferredoxin associated with2 cyp194a4 from r. palustris haa2
2d1sj1a_



99.6 31
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Single 4Fe-4S cluster ferredoxin
3d1iqza_



99.5 19
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Single 4Fe-4S cluster ferredoxin
4d1fxra_



99.5 18
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Single 4Fe-4S cluster ferredoxin
5d1vjwa_



99.4 34
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Single 4Fe-4S cluster ferredoxin
6c1dwlA_



99.2 24
PDB header:electron transfer
Chain: A: PDB Molecule:ferredoxin i;
PDBTitle: the ferredoxin-cytochrome complex using heteronuclear nmr2 and docking simulation
7d1xera_



98.9 25
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Archaeal ferredoxins
8c5odhG_



98.8 24
PDB header:oxidoreductase
Chain: G: PDB Molecule:heterodisulfide reductase, subunit a;
PDBTitle: heterodisulfide reductase / [nife]-hydrogenase complex from2 methanothermococcus thermolithotrophicus soaked with heterodisulfide3 for 3.5 minutes
9c3gyxJ_



98.8 18
PDB header:oxidoreductase
Chain: J: PDB Molecule:adenylylsulfate reductase;
PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas
10c6humI_



98.7 23
PDB header:proton transport
Chain: I: PDB Molecule:nad(p)h-quinone oxidoreductase subunit i;
PDBTitle: structure of the photosynthetic complex i from thermosynechococcus2 elongatus
11d2fug91



98.7 27
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
12c2fugG_



98.7 27
PDB header:oxidoreductase
Chain: G: PDB Molecule:nadh-quinone oxidoreductase chain 9;
PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus
13d1jnrb_



98.7 18
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
14c5t5iG_



98.7 25
PDB header:oxidoreductase
Chain: G: PDB Molecule:tungsten formylmethanofuran dehydrogenase subunit fwdg;
PDBTitle: tungsten-containing formylmethanofuran dehydrogenase from2 methanothermobacter wolfeii, orthorhombic form at 1.9 a
15d1jb0c_



98.7 27
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:7-Fe ferredoxin
16c5c4iB_



98.7 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:oxalate oxidoreductase subunit delta;
PDBTitle: structure of an oxalate oxidoreductase
17c2vpyB_



98.7 19
PDB header:oxidoreductase
Chain: B: PDB Molecule:nrfc protein;
PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp)
18d2fug34



98.6 23
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
19c2gmhA_



98.6 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:electron transfer flavoprotein-ubiquinone
PDBTitle: structure of porcine electron transfer flavoprotein-2 ubiquinone oxidoreductase in complexed with ubiquinone
20c6cfwN_



98.6 24
PDB header:membrane protein
Chain: N: PDB Molecule:nadh-plastoquinone oxidoreductase subunit;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase
21d3c8ya3



not modelled 98.6 20
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
22c5lc5I_



not modelled 98.6 18
PDB header:oxidoreductase
Chain: I: PDB Molecule:nadh dehydrogenase [ubiquinone] iron-sulfur protein 8,
PDBTitle: structure of mammalian respiratory complex i, class2
23d1gtea5



not modelled 98.6 8
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
24c4heaO_



not modelled 98.6 26
PDB header:oxidoreductase
Chain: O: PDB Molecule:nadh-quinone oxidoreductase subunit 9;
PDBTitle: crystal structure of the entire respiratory complex i from thermus2 thermophilus
25c6gcsI_



not modelled 98.5 15
PDB header:oxidoreductase
Chain: I: PDB Molecule:tyky subunit (nuim);
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
26c6cipD_



not modelled 98.5 17
PDB header:oxidoreductase
Chain: D: PDB Molecule:pyruvate-ferredoxin oxidoreductase;
PDBTitle: pyruvate:ferredoxin oxidoreductase from moorella thermoacetica with2 acetyl-tpp bound
27c1gthD_



not modelled 98.5 11
PDB header:oxidoreductase
Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase;
PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary complex with2 nadph and 5-iodouracil
28d1hfel2



not modelled 98.5 23
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
29c5t5iN_



not modelled 98.5 15
PDB header:oxidoreductase
Chain: N: PDB Molecule:tungsten formylmethanofuran dehydrogenase subunit fwdf;
PDBTitle: tungsten-containing formylmethanofuran dehydrogenase from2 methanothermobacter wolfeii, orthorhombic form at 1.9 a
30c5lnk3_



not modelled 98.5 20
PDB header:oxidoreductase
Chain: 3: PDB Molecule:mitochondrial complex i, 75 kda subunit;
PDBTitle: entire ovine respiratory complex i
31c5lc5G_



not modelled 98.5 19
PDB header:oxidoreductase
Chain: G: PDB Molecule:nadh-ubiquinone oxidoreductase 75 kda subunit,
PDBTitle: structure of mammalian respiratory complex i, class2
32c1c4cA_



not modelled 98.4 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:protein (fe-only hydrogenase);
PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum
33c1hfeL_



not modelled 98.4 22
PDB header:hydrogenase
Chain: L: PDB Molecule:protein (fe-only hydrogenase (e.c.1.18.99.1)
PDBTitle: 1.6 a resolution structure of the fe-only hydrogenase from2 desulfovibrio desulfuricans
34c6gcsA_



not modelled 98.4 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:75-kda protein (nuam);
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
35d1blua_



not modelled 98.4 17
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Short-chain ferredoxins
36c1kqfB_



not modelled 98.4 19
PDB header:oxidoreductase
Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur
PDBTitle: formate dehydrogenase n from e. coli
37c2c3yA_



not modelled 98.4 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyruvate-ferredoxin oxidoreductase;
PDBTitle: crystal structure of the radical form of2 pyruvate:ferredoxin oxidoreductase from desulfovibrio3 africanus
38c5xf9F_



not modelled 98.4 20
PDB header:oxidoreductase
Chain: F: PDB Molecule:nad-reducing hydrogenase;
PDBTitle: crystal structure of nad+-reducing [nife]-hydrogenase in the air-2 oxidized state
39c6czaB_



not modelled 98.4 19
PDB header:oxidoreductase
Chain: B: PDB Molecule:4fe-4s ferredoxin, iron-sulfur binding domain protein;
PDBTitle: the arsenate respiratory reductase (arr) complex from shewanella sp.2 ana-3 bound to phosphate
40d1dura_



not modelled 98.4 17
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Short-chain ferredoxins
41c2fugC_



not modelled 98.3 21
PDB header:oxidoreductase
Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3;
PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus
42d1kqfb1



not modelled 98.3 19
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
43c5ldwG_



not modelled 98.3 19
PDB header:oxidoreductase
Chain: G: PDB Molecule:nadh-ubiquinone oxidoreductase 75 kda subunit,
PDBTitle: structure of mammalian respiratory complex i, class1
44c5ldxG_



not modelled 98.3 19
PDB header:oxidoreductase
Chain: G: PDB Molecule:nadh-ubiquinone oxidoreductase 75 kda subunit,
PDBTitle: structure of mammalian respiratory complex i, class3.
45c2fgoA_



not modelled 98.3 14
PDB header:electron transport
Chain: A: PDB Molecule:ferredoxin;
PDBTitle: structure of the 2[4fe-4s] ferredoxin from pseudomonas2 aeruginosa
46d2gmha3



not modelled 98.3 15
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:ETF-QO domain-like
47c1ti2F_



not modelled 98.3 11
PDB header:oxidoreductase
Chain: F: PDB Molecule:pyrogallol hydroxytransferase small subunit;
PDBTitle: crystal structure of pyrogallol-phloroglucinol transhydroxylase from2 pelobacter acidigallici
48c2zvsB_



not modelled 98.3 17
PDB header:electron transport
Chain: B: PDB Molecule:uncharacterized ferredoxin-like protein yfhl;
PDBTitle: crystal structure of the 2[4fe-4s] ferredoxin from escherichia coli
49d2fdna_



not modelled 98.2 17
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Short-chain ferredoxins
50d7fd1a_



not modelled 98.2 17
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:7-Fe ferredoxin
51d1h98a_



not modelled 98.2 21
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:7-Fe ferredoxin
52d1rgva_



not modelled 98.2 16
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Short-chain ferredoxins
53d1fxda_



not modelled 98.2 22
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Single 4Fe-4S cluster ferredoxin
54c4z3zE_



not modelled 98.1 16
PDB header:oxidoreductase
Chain: E: PDB Molecule:iron-sulfur cluster-binding oxidoreductase, putative
PDBTitle: active site complex bambc of benzoyl coenzyme a reductase in complex2 with zinc
55c2ivfB_



not modelled 98.1 20
PDB header:oxidoreductase
Chain: B: PDB Molecule:ethylbenzene dehydrogenase beta-subunit;
PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum
56c1gx7A_



not modelled 98.1 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:periplasmic [fe] hydrogenase large subunit;
PDBTitle: best model of the electron transfer complex between cytochrome c3 and2 [fe]-hydrogenase
57d1fcaa_



not modelled 98.1 17
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Short-chain ferredoxins
58d1vlfn2



not modelled 98.1 13
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
59c4yddF_



not modelled 98.0 20
PDB header:oxidoreductase
Chain: F: PDB Molecule:dmso reductase family type ii enzyme, iron-sulfur subunit;
PDBTitle: crystal structure of the perchlorate reductase pcrab from azospira2 suillum ps
60d1bc6a_



not modelled 98.0 19
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:7-Fe ferredoxin
61d1h0hb_



not modelled 98.0 18
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
62d2c42a5



not modelled 98.0 17
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
63c6fahE_



not modelled 97.8 19
PDB header:flavoprotein
Chain: E: PDB Molecule:caffeyl-coa reductase-etf complex subunit care;
PDBTitle: molecular basis of the flavin-based electron-bifurcating caffeyl-coa2 reductase reaction
64c2v2kB_



not modelled 97.7 15
PDB header:electron transport
Chain: B: PDB Molecule:ferredoxin;
PDBTitle: the crystal structure of fdxa, a 7fe ferredoxin from2 mycobacterium smegmatis
65d1clfa_



not modelled 97.7 17
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Short-chain ferredoxins
66d1y5ib1



not modelled 97.2 11
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
67c6f0kB_



not modelled 97.1 24
PDB header:membrane protein
Chain: B: PDB Molecule:fe-s-cluster-containing hydrogenase;
PDBTitle: alternative complex iii
68d3c7bb1



not modelled 97.1 13
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
69c3j16B_



not modelled 96.6 18
PDB header:ribosome
Chain: B: PDB Molecule:rli1p;
PDBTitle: models of ribosome-bound dom34p and rli1p and their ribosomal binding2 partners
70c3c7bE_



not modelled 96.5 14
PDB header:oxidoreductase
Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit beta;
PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus
71c6btmB_



not modelled 96.4 25
PDB header:membrane protein
Chain: B: PDB Molecule:alternative complex iii subunit b;
PDBTitle: structure of alternative complex iii from flavobacterium johnsoniae2 (wild type)
72c3c7bA_



not modelled 95.6 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit alpha;
PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus
73c2v4jE_



not modelled 95.5 12
PDB header:oxidoreductase
Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit
PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration
74c2v4jA_



not modelled 95.0 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit
PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration
75c3bk7A_



not modelled 94.9 25
PDB header:hydrolyase/translation
Chain: A: PDB Molecule:abc transporter atp-binding protein;
PDBTitle: structure of the complete abce1/rnaase-l inhibitor protein from2 pyrococcus abysii
76c1nekB_



not modelled 94.9 21
PDB header:oxidoreductase/electron transport
Chain: B: PDB Molecule:succinate dehydrogenase iron-sulfur protein;
PDBTitle: complex ii (succinate dehydrogenase) from e. coli with2 ubiquinone bound
77d2bs2b1



not modelled 94.5 13
Fold:Globin-like
Superfamily:alpha-helical ferredoxin
Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
78c3zfsB_



not modelled 94.5 18
PDB header:oxidoreductase
Chain: B: PDB Molecule:f420-reducing hydrogenase, subunit gamma;
PDBTitle: cryo-em structure of the f420-reducing nife-hydrogenase from a2 methanogenic archaeon with bound substrate
79c2bs2E_



not modelled 93.9 17
PDB header:oxidoreductase
Chain: E: PDB Molecule:quinol-fumarate reductase iron-sulfur subunit b;
PDBTitle: quinol:fumarate reductase from wolinella succinogenes
80d1kf6b1



not modelled 93.9 15
Fold:Globin-like
Superfamily:alpha-helical ferredoxin
Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
81c5odcC_



not modelled 93.8 15
PDB header:oxidoreductase
Chain: C: PDB Molecule:heterodisulfide reductase, subunit c;
PDBTitle: heterodisulfide reductase / [nife]-hydrogenase complex from2 methanothermococcus thermolithotrophicus at 2.3 a resolution
82c3vrbF_



not modelled 93.3 17
PDB header:oxidoreductase/oxidoreductase inhibitor
Chain: F: PDB Molecule:iron-sulfur subunit of succinate dehydrogenase;
PDBTitle: mitochondrial rhodoquinol-fumarate reductase from the parasitic2 nematode ascaris suum with the specific inhibitor flutolanil and3 substrate fumarate
83d1nekb1



not modelled 93.3 21
Fold:Globin-like
Superfamily:alpha-helical ferredoxin
Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
84c5xmjJ_



not modelled 93.1 12
PDB header:electron transport
Chain: J: PDB Molecule:succinate dehydrogenase iron-sulfur subunit;
PDBTitle: crystal structure of quinol:fumarate reductase from desulfovibrio2 gigas
85d2v4jb1



not modelled 91.9 11
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
86c2h89B_



not modelled 91.4 19
PDB header:oxidoreductase
Chain: B: PDB Molecule:succinate dehydrogenase ip subunit;
PDBTitle: avian respiratory complex ii with malonate bound
87c3cf4A_



not modelled 90.3 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:acetyl-coa decarboxylase/synthase alpha subunit;
PDBTitle: structure of the codh component of the m. barkeri acds complex
88c5dqrA_



not modelled 88.9 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:7-hydroxymethyl chlorophyll a reductase, chloroplastic;
PDBTitle: the crystal structure of arabidopsis 7-hydroxymethyl chlorophyll a2 reductase (hcar)
89c4ur1A_



not modelled 87.5 26
PDB header:oxidoreductase
Chain: A: PDB Molecule:tetrachloroethene reductive dehalogenase catalytic subunit
PDBTitle: crystal structure of the pce reductive dehalogenase from s.2 multivorans in complex with dibromoethene
90c4rasC_



not modelled 85.0 18
PDB header:oxidoreductase
Chain: C: PDB Molecule:oxidoreductase, nad-binding/iron-sulfur cluster-binding
PDBTitle: reductive dehalogenase structure suggests a mechanism for b12-2 dependent dehalogenation
91c5d0bB_



not modelled 83.6 18
PDB header:oxidoreductase/rna
Chain: B: PDB Molecule:epoxyqueuosine reductase;
PDBTitle: crystal structure of epoxyqueuosine reductase with a trna-tyr2 epoxyqueuosine-modified trna stem loop
92c5d6sB_



not modelled 83.2 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:epoxyqueuosine reductase;
PDBTitle: structure of epoxyqueuosine reductase from streptococcus thermophilus.
93c2b76N_



not modelled 68.9 19
PDB header:oxidoreductase
Chain: N: PDB Molecule:fumarate reductase iron-sulfur protein;
PDBTitle: e. coli quinol fumarate reductase frda e49q mutation
94d2v4ja1



not modelled 62.1 17
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
95d3c7ba1



not modelled 61.3 17
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
96c2vdcI_



not modelled 53.0 21
PDB header:oxidoreductase
Chain: I: PDB Molecule:glutamate synthase [nadph] small chain;
PDBTitle: the 9.5 a resolution structure of glutamate synthase from cryo-2 electron microscopy and its oligomerization behavior in solution:3 functional implications.
97c5jcaL_



not modelled 38.6 19
PDB header:oxidoreductase
Chain: L: PDB Molecule:nadh-dependent ferredoxin:nadp oxidoreductase (nfni)
PDBTitle: nadp(h) bound nadh-dependent ferredoxin:nadp oxidoreductase (nfni)2 from pyrococcus furiosus
98c4ylfD_



not modelled 34.6 21
PDB header:oxidoreductase
Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase subunit a;
PDBTitle: insights into flavin-based electron bifurcation via the nadh-dependent2 reduced ferredoxin-nadp oxidoreductase structure
99d1jnia_



not modelled 18.4 21
Fold:Multiheme cytochromes
Superfamily:Multiheme cytochromes
Family:Di-heme elbow motif

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite