Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0771_(-)_864143_864577
DateFri Jul 26 01:50:35 BST 2019
Unique Job ID5269c47f163f77eb
SequenceMMDELRRTGL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:42.173 Y:35.390 Z:44.665
Model (left) based on template d2af7a1
Top template information
Fold:AhpD-like
Superfamily:AhpD-like
Family:CMD-like
Confidence and coverage
Confidence:100.0% Coverage: 77%
111 residues ( 77% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2af7a1



100.0 23
Fold:AhpD-like
Superfamily:AhpD-like
Family:CMD-like
2c4g9qA_



100.0 24
PDB header:lyase
Chain: A: PDB Molecule:4-carboxymuconolactone decarboxylase;
PDBTitle: crystal structure of a 4-carboxymuconolactone decarboxylase
3d2q0ta1



99.9 20
Fold:AhpD-like
Superfamily:AhpD-like
Family:AhpD
4c3d7iB_



99.7 14
PDB header:lyase
Chain: B: PDB Molecule:carboxymuconolactone decarboxylase family protein;
PDBTitle: crystal structure of carboxymuconolactone decarboxylase family protein2 possibly involved in oxygen detoxification (1591455) from3 methanococcus jannaschii at 1.75 a resolution
5d2cwqa1



99.7 12
Fold:AhpD-like
Superfamily:AhpD-like
Family:TTHA0727-like
6d1vkeb_



99.6 12
Fold:AhpD-like
Superfamily:AhpD-like
Family:CMD-like
7c5dipB_



99.6 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:alkyl hydroperoxide reductase ahpd;
PDBTitle: crystal structure of lpg0406 in reduced form from legionella2 pneumophila
8c3beyC_



99.5 13
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:conserved protein o27018;
PDBTitle: crystal structure of the protein o27018 from methanobacterium2 thermoautotrophicum. northeast structural genomics consortium target3 tt217
9c1p8cD_



99.5 10
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:conserved hypothetical protein;
PDBTitle: crystal structure of tm1620 (apc4843) from thermotoga2 maritima
10c2qeuA_



99.5 11
PDB header:lyase
Chain: A: PDB Molecule:putative carboxymuconolactone decarboxylase;
PDBTitle: crystal structure of putative carboxymuconolactone decarboxylase2 (yp_555818.1) from burkholderia xenovorans lb400 at 1.65 a resolution
11d1vkea_



99.4 10
Fold:AhpD-like
Superfamily:AhpD-like
Family:CMD-like
12d1knca_



99.3 16
Fold:AhpD-like
Superfamily:AhpD-like
Family:AhpD
13d2ouwa1



98.6 14
Fold:AhpD-like
Superfamily:AhpD-like
Family:TTHA0727-like
14c3lvyB_



96.9 14
PDB header:lyase
Chain: B: PDB Molecule:carboxymuconolactone decarboxylase family;
PDBTitle: crystal structure of carboxymuconolactone decarboxylase2 family protein smu.961 from streptococcus mutans
15c6ohiA_



95.7 8
PDB header:biosynthetic protein
Chain: A: PDB Molecule:debrominase bmp8;
PDBTitle: crystal structure of the debrominase bmp8 (apo)
16d2gmya1



95.0 15
Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
17d2o4da1



94.3 14
Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
18d2prra1



94.3 14
Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
19d2oyoa1



93.9 13
Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
20d2pfxa1



93.6 10
Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
21c4d9jI_



not modelled 93.2 16
PDB header:de novo protein
Chain: I: PDB Molecule:designed 16nm tetrahedral protein cage containing non-haem
PDBTitle: structure of a 16 nm protein cage designed by fusing symmetric2 oligomeric domains
22c3c1lB_



not modelled 92.7 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative antioxidant defense protein mlr4105;
PDBTitle: crystal structure of an antioxidant defense protein (mlr4105) from2 mesorhizobium loti maff303099 at 2.00 a resolution
23c5dj4D_



not modelled 77.6 21
PDB header:signaling protein
Chain: D: PDB Molecule:sestrin-2;
PDBTitle: leucine-bound sestrin2 from homo sapiens
24c5gzxD_



not modelled 64.7 8
PDB header:hydrolase
Chain: D: PDB Molecule:(r)-2-haloacid dehalogenase;
PDBTitle: the complex structure of d-2-haloacid dehalogenase mutant with d-2-cpa
25c5twaA_



not modelled 45.4 34
PDB header:apoptosis
Chain: A: PDB Molecule:bcl-x homologous protein, bhp2;
PDBTitle: crystal structure of geodia cydonium bhp2 in complex with lubomirskia2 baicalensis bak-2
26c5tmxA_



not modelled 32.5 8
PDB header:transcription regulator
Chain: A: PDB Molecule:protein sini;
PDBTitle: solution structure of sini, antagonist to the master biofilm-regulator2 sinr in bacillus subtilis
27c3pybB_



not modelled 28.5 27
PDB header:isomerase
Chain: B: PDB Molecule:ent-copalyl diphosphate synthase, chloroplastic;
PDBTitle: crystal structure of ent-copalyl diphosphate synthase from arabidopsis2 thaliana in complex with 13-aza-13,14-dihydrocopalyl diphosphate
28c3s9vD_



not modelled 27.0 22
PDB header:lyase, isomerase
Chain: D: PDB Molecule:abietadiene synthase, chloroplastic;
PDBTitle: abietadiene synthase from abies grandis
29c4wpxB_



not modelled 22.5 19
PDB header:cell cycle
Chain: B: PDB Molecule:putative sac3 family protein;
PDBTitle: chaetomium theromophilum trex2 cid domain complex
30c5aonB_



not modelled 19.9 27
PDB header:signaling protein
Chain: B: PDB Molecule:peroxin 14;
PDBTitle: crystal structure of the conserved n-terminal domain of2 pex14 from trypanosoma brucei
31c5iooA_



not modelled 19.1 28
PDB header:unknown function
Chain: A: PDB Molecule:avpa;
PDBTitle: accommodation of massive sequence variation in nanoarchaeota by the c-2 type lectin fold
32c3ff5B_



not modelled 18.4 27
PDB header:protein transport
Chain: B: PDB Molecule:peroxisomal biogenesis factor 14;
PDBTitle: crystal structure of the conserved n-terminal domain of the2 peroxisomal matrix-protein-import receptor, pex14p
33c3p5rB_



not modelled 17.6 19
PDB header:lyase
Chain: B: PDB Molecule:taxadiene synthase;
PDBTitle: crystal structure of taxadiene synthase from pacific yew (taxus2 brevifolia) in complex with mg2+ and 2-fluorogeranylgeranyl3 diphosphate
34c5l87A_



not modelled 17.4 27
PDB header:membrane protein
Chain: A: PDB Molecule:peroxin 14;
PDBTitle: targeting the pex14-pex5 interaction by small molecules provides novel2 therapeutic routes to treat trypanosomiases.
35c2w85A_



not modelled 15.7 27
PDB header:protein transport
Chain: A: PDB Molecule:peroxisomal membrane anchor protein pex14;
PDBTitle: structure of pex14 in complex with pex19
36d1dwka1



not modelled 15.5 24
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Cyanase N-terminal domain
37c5oynB_



not modelled 14.1 15
PDB header:lyase
Chain: B: PDB Molecule:dehydratase, ilvd/edd family;
PDBTitle: crystal structure of d-xylonate dehydratase in holo-form
38d1b0na1



not modelled 13.9 17
Fold:Dimerisation interlock
Superfamily:SinR repressor dimerisation domain-like
Family:SinR repressor dimerisation domain-like
39d1mpga1



not modelled 13.0 12
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:DNA repair glycosylase, 2 C-terminal domains
40c3s6iA_



not modelled 12.5 13
PDB header:hydrolase/dna
Chain: A: PDB Molecule:dna-3-methyladenine glycosylase 1;
PDBTitle: schizosaccaromyces pombe 3-methyladenine dna glycosylase (mag1) in2 complex with abasic-dna.
41d1qaxa2



not modelled 12.1 14
Fold:Substrate-binding domain of HMG-CoA reductase
Superfamily:Substrate-binding domain of HMG-CoA reductase
Family:Substrate-binding domain of HMG-CoA reductase
42d1sqwa2



not modelled 11.8 39
Fold:Cystatin-like
Superfamily:Pre-PUA domain
Family:Nip7p homolog, N-terminal domain
43c5ze4A_



not modelled 11.8 7
PDB header:lyase
Chain: A: PDB Molecule:dihydroxy-acid dehydratase, chloroplastic;
PDBTitle: the structure of holo- structure of dhad complex with [2fe-2s] cluster
44d1r5ta_



not modelled 11.7 22
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
45d2g39a2



not modelled 11.7 25
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase alpha subunit-like
46c3saeA_



not modelled 11.5 16
PDB header:lyase
Chain: A: PDB Molecule:alpha-bisabolene synthase;
PDBTitle: structure of a three-domain sesquiterpene synthase: a prospective2 target for advanced biofuels production
47c6ckqA_



not modelled 10.5 10
PDB header:transcription
Chain: A: PDB Molecule:transcription antitermination protein nusb;
PDBTitle: solution structure of the burkholderia thailandensis transcription2 antitermination protein nusb (bth_i1529) - seattle structural3 genomics center for infectious disease target butha.17903.a
48c5tn2B_



not modelled 10.4 17
PDB header:transcription
Chain: B: PDB Molecule:hth-type transcriptional regulator sinr;
PDBTitle: solution structure of the c-terminal multimerization domain of the2 master biofilm-regulator sinr from bacillus subtilis
49c4b24A_



not modelled 10.4 11
PDB header:hydrolase/dna
Chain: A: PDB Molecule:probable dna-3-methyladenine glycosylase 2;
PDBTitle: unprecedented sculpting of dna at abasic sites by dna glycoslase2 homolog mag2
50c1qaxA_



not modelled 10.4 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:protein (3-hydroxy-3-methylglutaryl-coenzyme a reductase);
PDBTitle: ternary complex of pseudomonas mevalonii hmg-coa reductase with hmg-2 coa and nad+
51d1adta1



not modelled 10.2 11
Fold:Domain of early E2A DNA-binding protein, ADDBP
Superfamily:Domain of early E2A DNA-binding protein, ADDBP
Family:Domain of early E2A DNA-binding protein, ADDBP
52c2mn4A_



not modelled 9.0 32
PDB header:de novo protein
Chain: A: PDB Molecule:computational designed protein based on structure template
PDBTitle: nmr solution structure of a computational designed protein based on2 structure template 1cy5
53c5j84A_



not modelled 9.0 15
PDB header:lyase
Chain: A: PDB Molecule:dihydroxy-acid dehydratase;
PDBTitle: crystal structure of l-arabinonate dehydratase in holo-form
54c5a2tG_



not modelled 8.5 3
PDB header:viral protein
Chain: G: PDB Molecule:coat protein;
PDBTitle: the molecular basis for flexibility in the flexible2 filamentous plant viruses
55c2rohA_



not modelled 8.5 11
PDB header:dna binding protein
Chain: A: PDB Molecule:telomere binding protein-1;
PDBTitle: the dna binding domain of rtbp1
56c6nmiD_



not modelled 8.2 10
PDB header:transcription
Chain: D: PDB Molecule:general transcription factor iih subunit 4, p52;
PDBTitle: cryo-em structure of the human tfiih core complex
57c4dbgB_



not modelled 7.9 8
PDB header:ligase
Chain: B: PDB Molecule:ring finger protein 31;
PDBTitle: crystal structure of hoil-1l-ubl complexed with a hoip-uba derivative
58c3sl9H_



not modelled 7.3 20
PDB header:signaling protein, protein binding
Chain: H: PDB Molecule:b-cell cll/lymphoma 9 protein;
PDBTitle: x-ray structure of beta catenin in complex with bcl9
59d1ey1a_



not modelled 6.9 10
Fold:NusB-like
Superfamily:NusB-like
Family:Antitermination factor NusB
60c2yg8B_



not modelled 6.8 8
PDB header:hydrolase
Chain: B: PDB Molecule:dna-3-methyladenine glycosidase ii, putative;
PDBTitle: structure of an unusual 3-methyladenine dna glycosylase ii (alka) from2 deinococcus radiodurans
61c4wuiA_



not modelled 6.6 15
PDB header:isomerase
Chain: A: PDB Molecule:n-(5'-phosphoribosyl)anthranilate isomerase;
PDBTitle: crystal structure of trpf from jonesia denitrificans
62c4kt3B_



not modelled 6.6 8
PDB header:hydrolase
Chain: B: PDB Molecule:putative lipoprotein;
PDBTitle: structure of a type vi secretion system effector-immunity complex from2 pseudomonas protegens
63d1sqga1



not modelled 6.5 10
Fold:NusB-like
Superfamily:NusB-like
Family:RmsB N-terminal domain-like
64c2dvwB_



not modelled 6.5 6
PDB header:cell cycle/protein-binding
Chain: B: PDB Molecule:26s protease regulatory subunit 6b;
PDBTitle: structure of the oncoprotein gankyrin in complex with s62 atpase of the 26s proteasome
65c3qauA_



not modelled 6.4 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:3-hydroxy-3-methylglutaryl-coenzyme a reductase;
PDBTitle: 3-hydroxy-3-methylglutaryl-coenzyme a reductase from streptococcus2 pneumoniae
66c1sqwA_



not modelled 6.4 39
PDB header:unknown function
Chain: A: PDB Molecule:saccharomyces cerevisiae nip7p homolog;
PDBTitle: crystal structure of kd93, a novel protein expressed in the2 human pro
67d1rlra1



not modelled 5.7 7
Fold:R1 subunit of ribonucleotide reductase, N-terminal domain
Superfamily:R1 subunit of ribonucleotide reductase, N-terminal domain
Family:R1 subunit of ribonucleotide reductase, N-terminal domain
68c1yvrA_



not modelled 5.6 8
PDB header:rna binding protein
Chain: A: PDB Molecule:60-kda ss-a/ro ribonucleoprotein;
PDBTitle: ro autoantigen
69c3u5cN_



not modelled 5.6 25
PDB header:ribosome
Chain: N: PDB Molecule:40s ribosomal protein s13;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 40s subunit, ribosome a
70c5i4aC_



not modelled 5.5 29
PDB header:rna binding protein/rna
Chain: C: PDB Molecule:argonaute protein;
PDBTitle: x-ray crystal structure of marinitoga piezophila argonaute in complex2 with 5' oh guide rna
71c1zaxX_



not modelled 5.4 40
PDB header:structural protein
Chain: X: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form b
72c1zavX_



not modelled 5.4 40
PDB header:structural protein
Chain: X: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p21
73c1zavY_



not modelled 5.4 40
PDB header:structural protein
Chain: Y: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p21
74c1zaxY_



not modelled 5.4 40
PDB header:structural protein
Chain: Y: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form b
75c1zaxV_



not modelled 5.4 40
PDB header:structural protein
Chain: V: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form b
76c1zavV_



not modelled 5.4 40
PDB header:structural protein
Chain: V: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p21
77c1zavW_



not modelled 5.4 40
PDB header:structural protein
Chain: W: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p21
78c1zaxW_



not modelled 5.4 40
PDB header:structural protein
Chain: W: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form b
79c1zaxU_



not modelled 5.4 40
PDB header:structural protein
Chain: U: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form b
80d1zavu1



not modelled 5.4 40
Fold:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
Superfamily:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
Family:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
81c1zavU_



not modelled 5.4 40
PDB header:structural protein
Chain: U: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p21
82d1a9xa1



not modelled 5.3 16
Fold:Carbamoyl phosphate synthetase, large subunit connection domain
Superfamily:Carbamoyl phosphate synthetase, large subunit connection domain
Family:Carbamoyl phosphate synthetase, large subunit connection domain
83c4huqS_



not modelled 5.3 31
PDB header:hydrolase
Chain: S: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a transporter
84c5odvB_



not modelled 5.2 12
PDB header:virus
Chain: B: PDB Molecule:coat protein;
PDBTitle: structure of watermelon mosaic virus potyvirus.
85c4aajA_



not modelled 5.2 15
PDB header:isomerase
Chain: A: PDB Molecule:n-(5'-phosphoribosyl)anthranilate isomerase;
PDBTitle: structure of n-(5'-phosphoribosyl)anthranilate isomerase from2 pyrococcus furiosus
86c2v07A_



not modelled 5.2 33
PDB header:photosynthesis
Chain: A: PDB Molecule:cytochrome c6;
PDBTitle: structure of the arabidopsis thaliana cytochrome c6a v52q variant
87c3p5nA_



not modelled 5.2 29
PDB header:transport protein
Chain: A: PDB Molecule:riboflavin uptake protein;
PDBTitle: structure and mechanism of the s component of a bacterial ecf2 transporter
88c3sl9F_



not modelled 5.1 20
PDB header:signaling protein, protein binding
Chain: F: PDB Molecule:b-cell cll/lymphoma 9 protein;
PDBTitle: x-ray structure of beta catenin in complex with bcl9
89c3sl9C_



not modelled 5.1 20
PDB header:signaling protein, protein binding
Chain: C: PDB Molecule:b-cell cll/lymphoma 9 protein;
PDBTitle: x-ray structure of beta catenin in complex with bcl9
90c4nvsB_



not modelled 5.0 21
PDB header:unknown function
Chain: B: PDB Molecule:putative enzyme, glyoxalase family;
PDBTitle: crystal structure of the q18cp6_clod6 protein from glyoxalase family.2 northeast structural genomics consortium target cfr3
91c2gl7C_



not modelled 5.0 20
PDB header:transcription
Chain: C: PDB Molecule:b-cell lymphoma 9 protein;
PDBTitle: crystal structure of a beta-catenin/bcl9/tcf4 complex

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite