Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0773c_(ggtA)_865854_867392
DateFri Jul 26 01:50:35 BST 2019
Unique Job IDfae67a74d313cf65
SequenceMPILATNVVC ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:61.895 Y:60.682 Z:66.575
Model (left) based on template c4y23A_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:gamma glutamyl transpeptidase,gamma-glutamyltranspeptidase;
PDBTitle: crystal structure of t399a precursor mutant protein of gamma-glutamyl2 transpeptidase from bacillus licheniformis
Confidence and coverage
Confidence:100.0% Coverage: 99%
508 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4y23A_



100.0 29
PDB header:transferase
Chain: A: PDB Molecule:gamma glutamyl transpeptidase,gamma-glutamyltranspeptidase;
PDBTitle: crystal structure of t399a precursor mutant protein of gamma-glutamyl2 transpeptidase from bacillus licheniformis
2d2nlza1



100.0 50
Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Gamma-glutamyltranspeptidase-like
3d2i3oa1



100.0 31
Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Gamma-glutamyltranspeptidase-like
4c2e0wA_



100.0 30
PDB header:transferase
Chain: A: PDB Molecule:gamma-glutamyltranspeptidase;
PDBTitle: t391a precursor mutant protein of gamma-glutamyltranspeptidase from2 escherichia coli
5c2v36A_



100.0 30
PDB header:transferase
Chain: A: PDB Molecule:gamma-glutamyltranspeptidase large chain;
PDBTitle: crystal structure of gamma-glutamyl transferase from bacillus subtilis
6c2qm6C_



100.0 28
PDB header:transferase
Chain: C: PDB Molecule:gamma-glutamyltranspeptidase;
PDBTitle: crystal structure of helicobacter pylori gamma-glutamyltranspeptidase2 in complex with glutamate
7c2z8jA_



100.0 29
PDB header:transferase
Chain: A: PDB Molecule:gamma-glutamyltranspeptidase;
PDBTitle: crystal structure of escherichia coli gamma-glutamyltranspeptidase in2 complex with azaserine prepared in the dark
8c4gdxA_



100.0 27
PDB header:hydrolase
Chain: A: PDB Molecule:gamma-glutamyltranspeptidase 1 heavy chain;
PDBTitle: crystal structure of human gamma-glutamyl transpeptidase--glutamate2 complex
9c5zjgC_



100.0 31
PDB header:transferase
Chain: C: PDB Molecule:gamma-glutamyltransferase 1 threonine peptidase. merops
PDBTitle: gamma-glutamyltranspeptidase from pseudomonas nitroreducens complexed2 with gly-gly
10c3g9kD_



100.0 27
PDB header:hydrolase
Chain: D: PDB Molecule:capsule biosynthesis protein capd;
PDBTitle: crystal structure of bacillus anthracis transpeptidase enzyme capd
11c2v36D_



100.0 29
PDB header:transferase
Chain: D: PDB Molecule:gamma-glutamyltranspeptidase small chain;
PDBTitle: crystal structure of gamma-glutamyl transferase from bacillus subtilis
12c2e0yB_



100.0 33
PDB header:transferase
Chain: B: PDB Molecule:gamma-glutamyltranspeptidase;
PDBTitle: crystal structure of the samarium derivative of mature gamma-2 glutamyltranspeptidase from escherichia coli
13c4gdxB_



100.0 28
PDB header:hydrolase
Chain: B: PDB Molecule:gamma-glutamyltranspeptidase 1 light chain;
PDBTitle: crystal structure of human gamma-glutamyl transpeptidase--glutamate2 complex
14c5zjgD_



100.0 29
PDB header:transferase
Chain: D: PDB Molecule:gamma-glutamyltransferase 1 threonine peptidase. merops
PDBTitle: gamma-glutamyltranspeptidase from pseudomonas nitroreducens complexed2 with gly-gly
15c2nqoB_



100.0 26
PDB header:transferase
Chain: B: PDB Molecule:gamma-glutamyltranspeptidase;
PDBTitle: crystal structure of helicobacter pylori gamma-glutamyltranspeptidase
16c3ga9S_



100.0 25
PDB header:hydrolase
Chain: S: PDB Molecule:capsule biosynthesis protein capd;
PDBTitle: crystal structure of bacillus anthracis transpeptidase enzyme capd,2 crystal form ii
17c1p4vA_



95.2 17
PDB header:hydrolase
Chain: A: PDB Molecule:n(4)-(beta-n-acetylglucosaminyl)-l-asparaginase
PDBTitle: crystal structure of the glycosylasparaginase precursor2 d151n mutant with glycine
18c1apyA_



94.8 33
PDB header:hydrolase
Chain: A: PDB Molecule:aspartylglucosaminidase;
PDBTitle: human aspartylglucosaminidase
19c1t3mA_



94.6 26
PDB header:hydrolase
Chain: A: PDB Molecule:putative l-asparaginase;
PDBTitle: structure of the isoaspartyl peptidase with l-asparaginase2 activity from e. coli
20c3cuqA_



94.1 20
PDB header:protein transport
Chain: A: PDB Molecule:vacuolar-sorting protein snf8;
PDBTitle: integrated structural and functional model of the human escrt-ii2 complex
21c2gezE_



not modelled 94.0 25
PDB header:hydrolase
Chain: E: PDB Molecule:l-asparaginase alpha subunit;
PDBTitle: crystal structure of potassium-independent plant asparaginase
22c4pu6A_



not modelled 94.0 20
PDB header:hydrolase
Chain: A: PDB Molecule:l-asparaginase alpha subunit;
PDBTitle: crystal structure of potassium-dependent plant-type l-asparaginase2 from phaseolus vulgaris in complex with k+ cations
23c2zmeA_



not modelled 93.8 20
PDB header:protein transport
Chain: A: PDB Molecule:vacuolar-sorting protein snf8;
PDBTitle: integrated structural and functional model of the human escrt-ii2 complex
24c2zakB_



not modelled 93.3 26
PDB header:hydrolase
Chain: B: PDB Molecule:l-asparaginase precursor;
PDBTitle: orthorhombic crystal structure of precursor e. coli isoaspartyl2 peptidase/l-asparaginase (ecaiii) with active-site t179a mutation
25c2gacA_



not modelled 92.6 26
PDB header:hydrolase
Chain: A: PDB Molecule:glycosylasparaginase;
PDBTitle: t152c mutant glycosylasparaginase from flavobacterium2 meningosepticum
26c2a8lB_



not modelled 91.9 31
PDB header:hydrolase
Chain: B: PDB Molecule:threonine aspartase 1;
PDBTitle: crystal structure of human taspase1 (t234a mutant)
27c1u5tA_



not modelled 89.6 21
PDB header:transport protein
Chain: A: PDB Molecule:appears to be functionally related to snf7;
PDBTitle: structure of the escrt-ii endosomal trafficking complex
28c4gduB_



not modelled 88.3 14
PDB header:hydrolase
Chain: B: PDB Molecule:l-asparaginase;
PDBTitle: crystal structure of sulfate-bound human l-asparaginase protein
29c1apzB_



not modelled 84.0 20
PDB header:complex (hydrolase/peptide)
Chain: B: PDB Molecule:aspartylglucosaminidase;
PDBTitle: human aspartylglucosaminidase complex with reaction product
30d1u5ta1



not modelled 83.6 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Vacuolar sorting protein domain
31c2gacD_



not modelled 70.6 20
PDB header:hydrolase
Chain: D: PDB Molecule:glycosylasparaginase;
PDBTitle: t152c mutant glycosylasparaginase from flavobacterium2 meningosepticum
32c1w7pD_



not modelled 68.6 34
PDB header:protein transport
Chain: D: PDB Molecule:vps36p, ylr417w;
PDBTitle: the crystal structure of endosomal complex escrt-ii2 (vps22/vps25/vps36)
33c2zalD_



not modelled 67.5 19
PDB header:hydrolase
Chain: D: PDB Molecule:l-asparaginase;
PDBTitle: crystal structure of e. coli isoaspartyl aminopeptidase/l-asparaginase2 in complex with l-aspartate
34c1u5tB_



not modelled 65.4 28
PDB header:transport protein
Chain: B: PDB Molecule:defective in vacuolar protein sorting; vps36p;
PDBTitle: structure of the escrt-ii endosomal trafficking complex
35c2zmeB_



not modelled 62.6 22
PDB header:protein transport
Chain: B: PDB Molecule:vacuolar protein-sorting-associated protein 36;
PDBTitle: integrated structural and functional model of the human escrt-ii2 complex
36c1jn9B_



not modelled 59.1 20
PDB header:hydrolase
Chain: B: PDB Molecule:putative l-asparaginase;
PDBTitle: structure of putative asparaginase encoded by escherichia coli ybik2 gene
37c1t3mD_



not modelled 59.1 20
PDB header:hydrolase
Chain: D: PDB Molecule:putative l-asparaginase;
PDBTitle: structure of the isoaspartyl peptidase with l-asparaginase2 activity from e. coli
38c1t3mB_



not modelled 59.1 20
PDB header:hydrolase
Chain: B: PDB Molecule:putative l-asparaginase;
PDBTitle: structure of the isoaspartyl peptidase with l-asparaginase2 activity from e. coli
39c1k2xD_



not modelled 53.7 20
PDB header:hydrolase
Chain: D: PDB Molecule:putative l-asparaginase;
PDBTitle: crystal structure of putative asparaginase encoded by escherichia coli2 ybik gene
40c1jn9D_



not modelled 53.7 20
PDB header:hydrolase
Chain: D: PDB Molecule:putative l-asparaginase;
PDBTitle: structure of putative asparaginase encoded by escherichia coli ybik2 gene
41c1k2xB_



not modelled 53.7 20
PDB header:hydrolase
Chain: B: PDB Molecule:putative l-asparaginase;
PDBTitle: crystal structure of putative asparaginase encoded by escherichia coli2 ybik gene
42c2zalB_



not modelled 43.0 17
PDB header:hydrolase
Chain: B: PDB Molecule:l-asparaginase;
PDBTitle: crystal structure of e. coli isoaspartyl aminopeptidase/l-asparaginase2 in complex with l-aspartate
43d2fi0a1



not modelled 41.1 15
Fold:SP0561-like
Superfamily:SP0561-like
Family:SP0561-like
44c2gezF_



not modelled 40.8 17
PDB header:hydrolase
Chain: F: PDB Molecule:l-asparaginase beta subunit;
PDBTitle: crystal structure of potassium-independent plant asparaginase
45c5lnfA_



not modelled 39.7 8
PDB header:chaperone
Chain: A: PDB Molecule:peroxisomal biogenesis factor 19;
PDBTitle: solution nmr structure of farnesylated pex19, c-terminal domain
46c2wl8D_



not modelled 38.4 8
PDB header:protein transport
Chain: D: PDB Molecule:peroxisomal biogenesis factor 19;
PDBTitle: x-ray crystal structure of pex19p
47c5xugB_



not modelled 38.4 35
PDB header:hydrolase
Chain: B: PDB Molecule:endo-1,4-beta-mannanase;
PDBTitle: complex structure(rmman134a-m5).
48c5jtsA_



not modelled 36.2 35
PDB header:hydrolase
Chain: A: PDB Molecule:beta-1,4-mannanase;
PDBTitle: structure of a beta-1,4-mannanase, ssgh134.
49c3fpvC_



not modelled 34.5 18
PDB header:heme binding protein
Chain: C: PDB Molecule:extracellular haem-binding protein;
PDBTitle: crystal structure of hbps
50c4pv3D_



not modelled 29.9 15
PDB header:hydrolase
Chain: D: PDB Molecule:l-asparaginase beta subunit;
PDBTitle: crystal structure of potassium-dependent plant-type l-asparaginase2 from phaseolus vulgaris in complex with na+ cations
51c3ka5A_



not modelled 28.0 15
PDB header:chaperone
Chain: A: PDB Molecule:ribosome-associated protein y (psrp-1);
PDBTitle: crystal structure of ribosome-associated protein y (psrp-1)2 from clostridium acetobutylicum. northeast structural3 genomics consortium target id car123a
52c2zuuA_



not modelled 27.1 30
PDB header:transferase
Chain: A: PDB Molecule:lacto-n-biose phosphorylase;
PDBTitle: crystal structure of galacto-n-biose/lacto-n-biose i phosphorylase in2 complex with glcnac
53d1jq5a_



not modelled 26.3 23
Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Iron-containing alcohol dehydrogenase
54c5loyD_



not modelled 26.1 18
PDB header:hydrolase
Chain: D: PDB Molecule:designed anbu protein;
PDBTitle: helical assembly of a designed anbu protein
55c1udsA_



not modelled 23.3 22
PDB header:transferase
Chain: A: PDB Molecule:ribonuclease ph;
PDBTitle: crystal structure of the trna processing enzyme rnase ph r126a mutant2 from aquifex aeolicus
56c3rf7A_



not modelled 23.2 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:iron-containing alcohol dehydrogenase;
PDBTitle: crystal structure of an iron-containing alcohol dehydrogenase2 (sden_2133) from shewanella denitrificans os-217 at 2.12 a resolution
57c6d6rF_



not modelled 22.9 26
PDB header:hydrolase
Chain: F: PDB Molecule:exosome complex component mtr3;
PDBTitle: human nuclear exosome-mtr4 rna complex - composite map after focused2 reconstruction
58d1u5tb1



not modelled 20.1 23
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Vacuolar sorting protein domain
59c3gxqB_



not modelled 19.7 45
PDB header:dna binding protein/dna
Chain: B: PDB Molecule:putative regulator of transfer genes arta;
PDBTitle: structure of arta and dna complex
60d1r6la1



not modelled 19.0 17
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
61c3hkmB_



not modelled 18.8 21
PDB header:hydrolase
Chain: B: PDB Molecule:os03g0854200 protein;
PDBTitle: crystal structure of rice(oryza sativa) rrp46
62c5nywT_



not modelled 18.6 18
PDB header:unknown function
Chain: T: PDB Molecule:proteasome subunit;
PDBTitle: anbu (ancestral beta-subunit) from yersinia bercovieri
63d2nn6f1



not modelled 18.0 44
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
64c4ifdC_



not modelled 17.8 17
PDB header:hydrolase/rna
Chain: C: PDB Molecule:exosome complex component rrp43;
PDBTitle: crystal structure of an 11-subunit eukaryotic exosome complex bound to2 rna
65d2nn6a1



not modelled 17.3 44
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
66c3bt3B_



not modelled 17.2 13
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:glyoxalase-related enzyme, arac type;
PDBTitle: crystal structure of a glyoxalase-related enzyme from clostridium2 phytofermentans
67d1udsa1



not modelled 17.1 22
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
68d2nn6e1



not modelled 17.0 33
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
69d2qalk1



not modelled 16.5 17
Fold:Ribonuclease H-like motif
Superfamily:Translational machinery components
Family:Ribosomal protein L18 and S11
70c3h7hA_



not modelled 16.0 27
PDB header:transcription
Chain: A: PDB Molecule:transcription elongation factor spt4;
PDBTitle: crystal structure of the human transcription elongation factor dsif,2 hspt4/hspt5 (176-273)
71c2qntA_



not modelled 15.9 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein atu1872;
PDBTitle: crystal structure of protein of unknown function from agrobacterium2 tumefaciens str. c58
72c5lbdB_



not modelled 15.9 7
PDB header:hydrolase
Chain: B: PDB Molecule:copper-transporting atpase paa1, chloroplastic;
PDBTitle: crystal structure of the n-domain of hma6, a copper-transporting p-2 type atpase
73d2ccaa1



not modelled 15.9 15
Fold:Heme-dependent peroxidases
Superfamily:Heme-dependent peroxidases
Family:Catalase-peroxidase KatG
74c3k2tA_



not modelled 15.6 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lmo2511 protein;
PDBTitle: crystal structure of lmo2511 protein from listeria2 monocytogenes, northeast structural genomics consortium3 target lkr84a
75c3b4tC_



not modelled 15.4 26
PDB header:transferase
Chain: C: PDB Molecule:ribonuclease ph;
PDBTitle: crystal structure of mycobacterium tuberculosis rnase ph, the2 mycobacterium tuberculosis structural genomics consortium target3 rv1340
76d1u2ka_



not modelled 15.4 12
Fold:Heme-dependent peroxidases
Superfamily:Heme-dependent peroxidases
Family:Catalase-peroxidase KatG
77c4ifdE_



not modelled 15.3 0
PDB header:hydrolase/rna
Chain: E: PDB Molecule:exosome complex component rrp42;
PDBTitle: crystal structure of an 11-subunit eukaryotic exosome complex bound to2 rna
78c3t5xB_



not modelled 15.3 25
PDB header:transcription
Chain: B: PDB Molecule:26s proteasome complex subunit dss1;
PDBTitle: pcid2:dss1 structure
79d1huwa_



not modelled 15.2 12
Fold:4-helical cytokines
Superfamily:4-helical cytokines
Family:Long-chain cytokines
80c4n04B_



not modelled 15.2 12
PDB header:oxidoreductase
Chain: B: PDB Molecule:glyoxalase/bleomycin resistance protein/dioxygenase;
PDBTitle: the crystal structure of glyoxalase / bleomycin resistance protein2 from catenulispora acidiphila dsm 44928
81c2nn6A_



not modelled 15.0 44
PDB header:hydrolase/transferase
Chain: A: PDB Molecule:polymyositis/scleroderma autoantigen 1;
PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40
82d2nn6d1



not modelled 14.8 17
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
83d2ba0g1



not modelled 14.4 44
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
84c5ol9A_



not modelled 14.4 13
PDB header:transcription
Chain: A: PDB Molecule:transcription elongation factor, mitochondrial;
PDBTitle: structure of human mitochondrial transcription elongation factor2 (tefm) n-terminal domain
85c2qz5A_



not modelled 14.1 16
PDB header:signaling protein, lipid binding protein
Chain: A: PDB Molecule:axin interactor, dorsalization associated
PDBTitle: crystal structure of the c-terminal domain of aida
86c5yvmA_



not modelled 13.8 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:alcohol dehydrogenase;
PDBTitle: crystal structure of the archaeal halo-thermophilic red sea brine pool2 alcohol dehydrogenase adh/d1 bound to nzq
87c2zkqk_



not modelled 13.8 9
PDB header:ribosomal protein/rna
Chain: K: PDB Molecule:
PDBTitle: structure of a mammalian ribosomal 40s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
88c2wnrB_



not modelled 13.0 26
PDB header:hydrolase
Chain: B: PDB Molecule:probable exosome complex exonuclease 1;
PDBTitle: the structure of methanothermobacter thermautotrophicus2 exosome core assembly
89c2f4nA_



not modelled 12.9 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein mj1651;
PDBTitle: crystal structure of protein mj1651 from methanococcus2 jannaschii dsm 2661, pfam duf62
90d2uubk1



not modelled 12.9 13
Fold:Ribonuclease H-like motif
Superfamily:Translational machinery components
Family:Ribosomal protein L18 and S11
91c2nn6F_



not modelled 12.8 44
PDB header:hydrolase/transferase
Chain: F: PDB Molecule:exosome component 6;
PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40
92c2wp8B_



not modelled 12.6 11
PDB header:hydrolase
Chain: B: PDB Molecule:exosome complex component ski6;
PDBTitle: yeast rrp44 nuclease
93c3itwA_



not modelled 11.7 16
PDB header:peptide binding protein
Chain: A: PDB Molecule:protein tiox;
PDBTitle: crystal structure of tiox from micromonospora sp. ml1
94d2i09a2



not modelled 11.0 33
Fold:DeoB insert domain-like
Superfamily:DeoB insert domain-like
Family:DeoB insert domain-like
95d1oysa1



not modelled 10.9 17
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
96d2je6a1



not modelled 10.8 33
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
97c3dd6A_



not modelled 10.7 17
PDB header:transferase
Chain: A: PDB Molecule:ribonuclease ph;
PDBTitle: crystal structure of rph, an exoribonuclease from bacillus anthracis2 at 1.7 a resolution
98c2br2G_



not modelled 10.7 33
PDB header:hydrolase
Chain: G: PDB Molecule:exosome complex exonuclease 2;
PDBTitle: rnase ph core of the archaeal exosome
99c2kmvA_



not modelled 10.7 9
PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting atpase 1;
PDBTitle: solution structure of the nucleotide binding domain of the2 human menkes protein in the atp-free form

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Transmembrane helix prediction 

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