Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0776c_(-)_868987_869766
DateFri Jul 26 01:50:35 BST 2019
Unique Job IDda0e33b583485683
SequenceMYFVGVDLAW ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:45.405 Y:38.267 Z:41.932
Model (left) based on template c4ep5A_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:crossover junction endodeoxyribonuclease ruvc;
PDBTitle: thermus thermophilus ruvc structure
Confidence and coverage
Confidence: 96.2% Coverage: 53%
138 residues ( 53% of your sequence) have been modelled with 96.2% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4ep5A_



96.2 22
PDB header:hydrolase
Chain: A: PDB Molecule:crossover junction endodeoxyribonuclease ruvc;
PDBTitle: thermus thermophilus ruvc structure
2c4ehtA_



89.3 16
PDB header:electron transport
Chain: A: PDB Molecule:activator of 2-hydroxyisocaproyl-coa dehydratase;
PDBTitle: activator of the 2-hydroxyisocaproyl-coa dehydratase from clostridium2 difficile with bound adp
3d1huxa_



87.9 15
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:BadF/BadG/BcrA/BcrD-like
4d1vhxa_



85.1 23
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Putative Holliday junction resolvase RuvX
5d3bzka5



84.6 26
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Tex RuvX-like domain-like
6d1iv0a_



83.5 17
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Putative Holliday junction resolvase RuvX
7c5nckA_



73.7 20
PDB header:transferase
Chain: A: PDB Molecule:n-acetylmannosamine kinase;
PDBTitle: the crystal structure of n-acetylmannosamine kinase in fusobacterium2 nucleatum
8c2e2pA_



73.6 34
PDB header:transferase
Chain: A: PDB Molecule:hexokinase;
PDBTitle: crystal structure of sulfolobus tokodaii hexokinase in2 complex with adp
9c3eo3B_



62.4 21
PDB header:isomerase, transferase
Chain: B: PDB Molecule:bifunctional udp-n-acetylglucosamine 2-epimerase/n-
PDBTitle: crystal structure of the n-acetylmannosamine kinase domain of human2 gne protein
10d2aa4a1



61.5 16
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
11c3vewA_



58.4 18
PDB header:transferase
Chain: A: PDB Molecule:o-carbamoyltransferase tobz;
PDBTitle: crystal structure of the o-carbamoyltransferase tobz in complex with2 adp
12c2aa4B_



58.0 16
PDB header:transferase
Chain: B: PDB Molecule:putative n-acetylmannosamine kinase;
PDBTitle: crystal structure of escherichia coli putative n-2 acetylmannosamine kinase, new york structural genomics3 consortium
13c2ivoC_



54.2 16
PDB header:hydrolase
Chain: C: PDB Molecule:up1;
PDBTitle: structure of up1 protein
14c3zeuE_



54.0 24
PDB header:hydrolase
Chain: E: PDB Molecule:probable trna threonylcarbamoyladenosine biosynthesis
PDBTitle: structure of a salmonella typhimurium ygjd-yeaz heterodimer bound to2 atpgammas
15c6fpeG_



51.8 23
PDB header:rna binding protein
Chain: G: PDB Molecule:trna n6-adenosine threonylcarbamoyltransferase;
PDBTitle: bacterial protein complex
16c1zc6A_



47.0 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:probable n-acetylglucosamine kinase;
PDBTitle: crystal structure of putative n-acetylglucosamine kinase from2 chromobacterium violaceum. northeast structural genomics target3 cvr23.
17d2ch5a2



45.6 25
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:BadF/BadG/BcrA/BcrD-like
18c3enoB_



43.7 13
PDB header:hydrolase/unknown function
Chain: B: PDB Molecule:putative o-sialoglycoprotein endopeptidase;
PDBTitle: crystal structure of pyrococcus furiosus pcc1 in complex2 with thermoplasma acidophilum kae1
19c3hz6A_



42.2 24
PDB header:transferase
Chain: A: PDB Molecule:xylulokinase;
PDBTitle: crystal structure of xylulokinase from chromobacterium violaceum
20d1hjra_



42.0 22
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:RuvC resolvase
21c3en9B_



not modelled 32.4 28
PDB header:hydrolase
Chain: B: PDB Molecule:o-sialoglycoprotein endopeptidase/protein kinase;
PDBTitle: structure of the methanococcus jannaschii kae1-bud32 fusion2 protein
22c2ch5D_



not modelled 29.7 22
PDB header:transferase
Chain: D: PDB Molecule:nagk protein;
PDBTitle: crystal structure of human n-acetylglucosamine kinase in2 complex with n-acetylglucosamine
23c3vovC_



not modelled 29.6 22
PDB header:transferase
Chain: C: PDB Molecule:glucokinase;
PDBTitle: crystal structure of rok hexokinase from thermus thermophilus
24d1xw8a_



not modelled 27.5 15
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:LamB/YcsF-like
25d1fnoa3



not modelled 26.7 15
Fold:Ferredoxin-like
Superfamily:Bacterial exopeptidase dimerisation domain
Family:Bacterial exopeptidase dimerisation domain
26d2ewsa1



not modelled 25.8 12
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Fumble-like
27c3giuA_



not modelled 24.1 21
PDB header:hydrolase
Chain: A: PDB Molecule:pyrrolidone-carboxylate peptidase;
PDBTitle: 1.25 angstrom crystal structure of pyrrolidone-carboxylate peptidase2 (pcp) from staphylococcus aureus
28d1zc6a1



not modelled 22.3 29
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:BadF/BadG/BcrA/BcrD-like
29d1nu0a_



not modelled 22.3 17
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Putative Holliday junction resolvase RuvX
30c2ap1A_



not modelled 21.7 13
PDB header:transferase
Chain: A: PDB Molecule:putative regulator protein;
PDBTitle: crystal structure of the putative regulatory protein
31d1a2za_



not modelled 17.6 20
Fold:Phosphorylase/hydrolase-like
Superfamily:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
Family:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
32c2gupA_



not modelled 16.1 15
PDB header:transferase
Chain: A: PDB Molecule:rok family protein;
PDBTitle: structural genomics, the crystal structure of a rok family protein2 from streptococcus pneumoniae tigr4 in complex with sucrose
33c5vfbB_



not modelled 16.0 16
PDB header:transferase
Chain: B: PDB Molecule:malate synthase g;
PDBTitle: 1.36 angstrom resolution crystal structure of malate synthase g from2 pseudomonas aeruginosa in complex with glycolic acid.
34c4idhA_



not modelled 15.7 16
PDB header:viral protein
Chain: A: PDB Molecule:gene 2 protein;
PDBTitle: crystal structure of the large terminase subunit gp2 of bacterial2 virus sf6
35c3fb9B_



not modelled 13.8 63
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: the crystal structure of the protein with unknown function from2 streptococcus pneumoniae tigr4
36d2ap1a2



not modelled 13.7 16
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
37d1iofa_



not modelled 13.4 20
Fold:Phosphorylase/hydrolase-like
Superfamily:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
Family:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
38c2qm1D_



not modelled 13.3 19
PDB header:transferase
Chain: D: PDB Molecule:glucokinase;
PDBTitle: crystal structure of glucokinase from enterococcus faecalis
39d1jzta_



not modelled 12.0 15
Fold:YjeF N-terminal domain-like
Superfamily:YjeF N-terminal domain-like
Family:YjeF N-terminal domain-like
40d1z6ra2



not modelled 11.4 13
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
41c3c6aA_



not modelled 11.3 11
PDB header:viral protein
Chain: A: PDB Molecule:terminase large subunit;
PDBTitle: crystal structure of the rb49 gp17 nuclease domain
42c4gxhC_



not modelled 11.2 18
PDB header:hydrolase
Chain: C: PDB Molecule:pyrrolidone-carboxylate peptidase;
PDBTitle: crystal structure of a pyrrolidone-carboxylate peptidase 1 (target id2 nysgrc-012831) from xenorhabdus bovienii ss-2004
43d1d8ca_



not modelled 10.6 31
Fold:TIM beta/alpha-barrel
Superfamily:Malate synthase G
Family:Malate synthase G
44c2oceA_



not modelled 10.4 26
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein pa5201;
PDBTitle: crystal structure of tex family protein pa5201 from2 pseudomonas aeruginosa
45d2gupa1



not modelled 8.7 17
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
46d2al1a1



not modelled 8.5 12
Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:Enolase
47c3htvA_



not modelled 8.4 16
PDB header:transferase
Chain: A: PDB Molecule:d-allose kinase;
PDBTitle: crystal structure of d-allose kinase (np_418508.1) from escherichia2 coli k12 at 1.95 a resolution
48c4o66A_



not modelled 8.3 20
PDB header:dna binding protein
Chain: A: PDB Molecule:swi/snf-related matrix-associated actin-dependent regulator
PDBTitle: crystal structure of smarcal1 harp substrate recognition domain
49c5opqA_



not modelled 7.8 31
PDB header:hydrolase
Chain: A: PDB Molecule:3,6-anhydro-d-galactosidase;
PDBTitle: a 3,6-anhydro-d-galactosidase produced by zobellia galactanivorans.2 this is an exo-lytic enzyme that hydrolyzes terminal 3,6-anhydro-d-3 galactose from the non-reducing end of carrageenan oligosaccharides.
50c5m45K_



not modelled 7.6 28
PDB header:ligase
Chain: K: PDB Molecule:acetone carboxylase beta subunit;
PDBTitle: structure of acetone carboxylase purified from xanthobacter2 autotrophicus
51c4htlA_



not modelled 7.2 20
PDB header:transferase
Chain: A: PDB Molecule:beta-glucoside kinase;
PDBTitle: lmo2764 protein, a putative n-acetylmannosamine kinase, from listeria2 monocytogenes
52c3lm2B_



not modelled 7.1 11
PDB header:transferase
Chain: B: PDB Molecule:putative kinase;
PDBTitle: crystal structure of putative kinase. (17743352) from agrobacterium2 tumefaciens str. c58 (dupont) at 1.70 a resolution
53c1okjB_



not modelled 6.9 25
PDB header:hydrolase
Chain: B: PDB Molecule:trna threonylcarbamoyladenosine biosynthesis protein tsab;
PDBTitle: crystal structure of the essential e. coli yeaz2 protein by mad method using the gadolinium complex3 "dotma"
54d1z05a3



not modelled 6.6 13
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
55c5v5fA_



not modelled 6.3 9
PDB header:transferase
Chain: A: PDB Molecule:at3g11770;
PDBTitle: crystal structure of rice1 (pnt2)
56c1xc3A_



not modelled 6.0 11
PDB header:transferase
Chain: A: PDB Molecule:putative fructokinase;
PDBTitle: structure of a putative fructokinase from bacillus subtilis
57d1auga_



not modelled 5.7 15
Fold:Phosphorylase/hydrolase-like
Superfamily:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
Family:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
58d1iu8a_



not modelled 5.7 17
Fold:Phosphorylase/hydrolase-like
Superfamily:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
Family:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
59c4rkuI_



not modelled 5.5 36
PDB header:photosynthesis
Chain: I: PDB Molecule:photosystem i reaction center subunit viii;
PDBTitle: crystal structure of plant photosystem i at 3 angstrom resolution
60c4y28I_



not modelled 5.3 36
PDB header:photosynthesis
Chain: I: PDB Molecule:photosystem i reaction center subunit viii;
PDBTitle: the structure of plant photosystem i super-complex at 2.8 angstrom2 resolution.
61c5z47A_



not modelled 5.1 12
PDB header:hydrolase
Chain: A: PDB Molecule:pyrrolidone-carboxylate peptidase;
PDBTitle: crystal structure of pyrrolidone carboxylate peptidase i with2 disordered loop a from deinococcus radiodurans r1

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