Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0777_(purB)_870011_871429
DateFri Jul 26 01:50:36 BST 2019
Unique Job ID9c55f3234b203d05
SequenceVSIPNVLATR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:57.330 Y:92.794 Z:82.758
Model (left) based on template c4nleB_
Top template information
PDB header:lyase
Chain: B: PDB Molecule:adenylosuccinate lyase;
PDBTitle: crystal structure of apo adenylosuccinate lyase from mycobacterium2 smegmatis
Confidence and coverage
Confidence:100.0% Coverage: 95%
450 residues ( 95% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4nleB_
100.0 82
PDB header:lyase
Chain: B: PDB Molecule:adenylosuccinate lyase;
PDBTitle: crystal structure of apo adenylosuccinate lyase from mycobacterium2 smegmatis
2c5vkwB_
100.0 31
PDB header:lyase
Chain: B: PDB Molecule:adenylosuccinate lyase;
PDBTitle: crystal structure of adenylosuccinate lyase ade13 from candida2 albicans
3c2vd6B_
100.0 30
PDB header:lyase
Chain: B: PDB Molecule:adenylosuccinate lyase;
PDBTitle: human adenylosuccinate lyase in complex with its substrate2 n6-(1,2-dicarboxyethyl)-amp, and its products amp and3 fumarate.
4c2pfmA_
100.0 27
PDB header:lyase
Chain: A: PDB Molecule:adenylosuccinate lyase;
PDBTitle: crystal structure of adenylosuccinate lyase (purb) from bacillus2 anthracis
5d1c3ca_
100.0 26
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
6d1re5a_
100.0 19
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
7c1yisA_
100.0 28
PDB header:lyase
Chain: A: PDB Molecule:adenylosuccinate lyase;
PDBTitle: structural genomics of caenorhabditis elegans: adenylosuccinate lyase
8c5xnzA_
100.0 24
PDB header:lyase
Chain: A: PDB Molecule:cred;
PDBTitle: crystal structure of cred complex with fumarate
9c4eeiA_
100.0 23
PDB header:lyase
Chain: A: PDB Molecule:adenylosuccinate lyase;
PDBTitle: crystal structure of adenylosuccinate lyase from francisella2 tularensis complexed with amp and succinate
10c5eyvB_
100.0 30
PDB header:lyase
Chain: B: PDB Molecule:adenylosuccinate lyase;
PDBTitle: crystal structure of adenylosuccinate lyase from schistosoma mansoni2 in apo form.
11d1q5na_
100.0 19
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
12d1i0aa_
100.0 16
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
13d1tj7a_
100.0 18
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
14d1dofa_
100.0 27
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
15d1hy0a_
100.0 18
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
16c6igaB_
100.0 17
PDB header:lyase
Chain: B: PDB Molecule:argininosuccinate lyase;
PDBTitle: crystal structure of argininosuccinate lyase from mycobacterium2 tuberculosis
17d1tjva_
100.0 17
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
18c2qgaC_
100.0 17
PDB header:lyase
Chain: C: PDB Molecule:adenylosuccinate lyase;
PDBTitle: plasmodium vivax adenylosuccinate lyase pv003765 with amp bound
19d1k62a_
100.0 17
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
20c3c8tA_
100.0 23
PDB header:lyase
Chain: A: PDB Molecule:fumarate lyase;
PDBTitle: crystal structure of fumarate lyase from mesorhizobium sp. bnc1
21c2e9fC_
not modelled 100.0 17
PDB header:lyase
Chain: C: PDB Molecule:argininosuccinate lyase;
PDBTitle: crystal structure of t.th.hb8 argininosuccinate lyase complexed with2 l-arginine
22c4efcA_
not modelled 100.0 18
PDB header:lyase
Chain: A: PDB Molecule:adenylosuccinate lyase;
PDBTitle: crystal structure of adenylosuccinate lyase from trypanosoma brucei,2 tb427tmp.160.5560
23c3bhgA_
not modelled 100.0 16
PDB header:lyase
Chain: A: PDB Molecule:adenylosuccinate lyase;
PDBTitle: crystal structure of adenylosuccinate lyase from legionella2 pneumophila
24c4mx2C_
not modelled 100.0 19
PDB header:lyase
Chain: C: PDB Molecule:adenylosuccinate lyase;
PDBTitle: crystal structure of adenylosuccinate lyase from leishmania donovani
25c6g3eA_
not modelled 100.0 19
PDB header:lyase
Chain: A: PDB Molecule:argininosuccinate lyase;
PDBTitle: crystal structure of edds lyase in complex with formate
26c2ptsA_
not modelled 100.0 19
PDB header:lyase
Chain: A: PDB Molecule:adenylosuccinate lyase;
PDBTitle: crystal structure of wild type escherichia coli adenylosuccinate lyase
27d1fuoa_
not modelled 100.0 18
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
28c6n1mA_
not modelled 100.0 18
PDB header:lyase
Chain: A: PDB Molecule:fumarate hydratase class ii;
PDBTitle: crystal structure of fumarate hydratase class ii from legionella2 pneumophila philadelphia 1
29d1j3ua_
not modelled 100.0 18
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
30c1yfmA_
not modelled 100.0 17
PDB header:lyase
Chain: A: PDB Molecule:fumarase;
PDBTitle: recombinant yeast fumarase
31d1yfma_
not modelled 100.0 17
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
32c4hgvD_
not modelled 100.0 18
PDB header:lyase
Chain: D: PDB Molecule:fumarate hydratase class ii;
PDBTitle: crystal structure of a fumarate hydratase
33d1vdka_
not modelled 100.0 18
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
34d1jswa_
not modelled 100.0 19
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
35c3gtdA_
not modelled 100.0 17
PDB header:lyase
Chain: A: PDB Molecule:fumarate hydratase class ii;
PDBTitle: 2.4 angstrom crystal structure of fumarate hydratase from rickettsia2 prowazekii
36d1jswc_
not modelled 100.0 18
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
37c3no9C_
not modelled 100.0 16
PDB header:lyase
Chain: C: PDB Molecule:fumarate hydratase class ii;
PDBTitle: crystal structure of apo fumarate hydratase from mycobacterium2 tuberculosis
38c2fenA_
not modelled 100.0 19
PDB header:isomerase
Chain: A: PDB Molecule:3-carboxy-cis,cis-muconate lactonizing enzyme;
PDBTitle: 3-carboxy-cis,cis-muconate lactonizing enzyme from agrobacterium2 radiobacter s2
39c3ocfB_
not modelled 100.0 16
PDB header:lyase
Chain: B: PDB Molecule:fumarate lyase:delta crystallin;
PDBTitle: crystal structure of fumarate lyase:delta crystallin from brucella2 melitensis in native form
40d1f1oa_
not modelled 100.0 25
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
41c4hgvC_
not modelled 100.0 18
PDB header:lyase
Chain: C: PDB Molecule:fumarate hydratase class ii;
PDBTitle: crystal structure of a fumarate hydratase
42c3e04A_
not modelled 100.0 18
PDB header:lyase
Chain: A: PDB Molecule:fumarate hydratase;
PDBTitle: crystal structure of human fumarate hydratase
43c3e04C_
not modelled 100.0 19
PDB header:lyase
Chain: C: PDB Molecule:fumarate hydratase;
PDBTitle: crystal structure of human fumarate hydratase
44c3gtdB_
not modelled 100.0 16
PDB header:lyase
Chain: B: PDB Molecule:fumarate hydratase class ii;
PDBTitle: 2.4 angstrom crystal structure of fumarate hydratase from rickettsia2 prowazekii
45c3r6yG_
not modelled 100.0 17
PDB header:lyase
Chain: G: PDB Molecule:aspartase;
PDBTitle: crystal structure of chymotrypsin-treated aspartase from bacillus sp.2 ym55-1
46c2xgvA_
not modelled 46.1 24
PDB header:viral protein
Chain: A: PDB Molecule:psiv capsid n-terminal domain;
PDBTitle: structure of the n-terminal domain of capsid protein from2 rabbit endogenous lentivirus (relik)
47d2ahra1
not modelled 36.1 16
Fold:6-phosphogluconate dehydrogenase C-terminal domain-like
Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like
Family:ProC C-terminal domain-like
48c2rcyB_
not modelled 31.0 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:pyrroline carboxylate reductase;
PDBTitle: crystal structure of plasmodium falciparum pyrroline carboxylate2 reductase (mal13p1.284) with nadp bound
49c2ctoA_
not modelled 27.7 50
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:novel protein;
PDBTitle: solution structure of the hmg box like domain from human2 hypothetical protein flj14904
50d1yqga1
not modelled 24.2 16
Fold:6-phosphogluconate dehydrogenase C-terminal domain-like
Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like
Family:ProC C-terminal domain-like
51c5nvkF_
not modelled 24.1 36
PDB header:translation
Chain: F: PDB Molecule:grb10-interacting gyf protein 1;
PDBTitle: crystal structure of the human 4ehp-gigyf1 complex
52c1nvtA_
not modelled 23.3 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:shikimate 5'-dehydrogenase;
PDBTitle: crystal structure of shikimate dehydrogenase (aroe or2 mj1084) in complex with nadp+
53c2ag8A_
not modelled 20.0 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyrroline-5-carboxylate reductase;
PDBTitle: nadp complex of pyrroline-5-carboxylate reductase from neisseria2 meningitidis
54d1g3pa2
not modelled 17.6 20
Fold:N-terminal domains of the minor coat protein g3p
Superfamily:N-terminal domains of the minor coat protein g3p
Family:N-terminal domains of the minor coat protein g3p
55d1u5ta1
not modelled 17.2 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Vacuolar sorting protein domain
56c3bbnC_
not modelled 17.0 30
PDB header:ribosome
Chain: C: PDB Molecule:ribosomal protein s3;
PDBTitle: homology model for the spinach chloroplast 30s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome.
57c1dipA_
not modelled 16.4 17
PDB header:acetylation
Chain: A: PDB Molecule:delta-sleep-inducing peptide immunoreactive
PDBTitle: the solution structure of porcine delta-sleep-inducing2 peptide immunoreactive peptide, nmr, 10 structures
58c2digA_
not modelled 14.8 67
PDB header:dna binding protein
Chain: A: PDB Molecule:lamin-b receptor;
PDBTitle: solusion structure of the todor domain of human lamin-b2 receptor
59c4ug3C_
not modelled 14.3 14
PDB header:cell cycle
Chain: C: PDB Molecule:cell cycle protein gpsb;
PDBTitle: b. subtilis gpsb n-terminal domain
60c2hk8B_
not modelled 13.9 8
PDB header:oxidoreductase
Chain: B: PDB Molecule:shikimate dehydrogenase;
PDBTitle: crystal structure of shikimate dehydrogenase from aquifex2 aeolicus at 2.35 angstrom resolution
61d1nvta2
not modelled 13.3 25
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Shikimate dehydrogenase-like
62c3fbtB_
not modelled 13.0 13
PDB header:oxidoreductase, lyase
Chain: B: PDB Molecule:chorismate mutase and shikimate 5-dehydrogenase fusion
PDBTitle: crystal structure of a chorismate mutase/shikimate 5-dehydrogenase2 fusion protein from clostridium acetobutylicum
63d2gj4a1
not modelled 13.0 16
Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Oligosaccharide phosphorylase
64c2wukD_
not modelled 12.2 16
PDB header:cell cycle
Chain: D: PDB Molecule:septum site-determining protein diviva;
PDBTitle: diviva n-terminal domain, f17a mutant
65c2l81A_
not modelled 11.6 17
PDB header:cell adhesion
Chain: A: PDB Molecule:enhancer of filamentation 1;
PDBTitle: solution nmr structure of the serine-rich domain of hef1 (enhancer of2 filamentation 1) from homo sapiens, northeast structural genomics3 consortium target hr5554a
66d1p77a2
not modelled 11.3 29
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Shikimate dehydrogenase-like
67d1vi2a2
not modelled 11.2 18
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Shikimate dehydrogenase-like
68c1wjvA_
not modelled 11.2 56
PDB header:dna binding protein
Chain: A: PDB Molecule:cell growth regulating nucleolar protein lyar;
PDBTitle: solution structure of the n-terminal zinc finger domain of2 mouse cell growth regulating nucleolar protein lyar
69c2ev9B_
not modelled 11.1 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:shikimate 5-dehydrogenase;
PDBTitle: crystal structure of shikimate 5-dehydrogenase (aroe) from thermus2 thermophilus hb8 in complex with nadp(h) and shikimate
70c5w16D_
not modelled 10.9 14
PDB header:isomerase
Chain: D: PDB Molecule:glutamate racemase;
PDBTitle: crystal structure of glutamate racemase from thermus thermophilus in2 complex with d-glutamate
71d2qalc1
not modelled 10.7 13
Fold:Alpha-lytic protease prodomain-like
Superfamily:Prokaryotic type KH domain (KH-domain type II)
Family:Prokaryotic type KH domain (KH-domain type II)
72c3no7A_
not modelled 10.7 23
PDB header:dna binding protein
Chain: A: PDB Molecule:putative plasmid related protein;
PDBTitle: crystal structure of the centromere-binding protein parb from plasmid2 pcxc100
73c2jfqA_
not modelled 10.7 20
PDB header:isomerase
Chain: A: PDB Molecule:glutamate racemase;
PDBTitle: crystal structure of staphylococcus aureus glutamate racemase in2 complex with d- glutamate
74c2gzmB_
not modelled 10.6 14
PDB header:isomerase
Chain: B: PDB Molecule:glutamate racemase;
PDBTitle: crystal structure of the glutamate racemase from bacillus anthracis
75d1d1da2
not modelled 10.6 15
Fold:Retrovirus capsid protein, N-terminal core domain
Superfamily:Retrovirus capsid protein, N-terminal core domain
Family:Retrovirus capsid protein, N-terminal core domain
76c2zmeA_
not modelled 10.6 17
PDB header:protein transport
Chain: A: PDB Molecule:vacuolar-sorting protein snf8;
PDBTitle: integrated structural and functional model of the human escrt-ii2 complex
77c5ns5A_
not modelled 10.5 8
PDB header:hydrolase
Chain: A: PDB Molecule:dipeptidase glij;
PDBTitle: cys-gly dipeptidase glij in complex with cu2+ and zn2+
78c4ardA_
not modelled 10.3 12
PDB header:viral protein
Chain: A: PDB Molecule:capsid protein p27;
PDBTitle: structure of the immature retroviral capsid at 8a resolution by cryo-2 electron microscopy
79c5dzsA_
not modelled 10.1 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:shikimate dehydrogenase (nadp(+));
PDBTitle: 1.5 angstrom crystal structure of shikimate dehydrogenase 1 from2 peptoclostridium difficile.
80c1vi2B_
not modelled 10.1 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:shikimate 5-dehydrogenase 2;
PDBTitle: crystal structure of shikimate-5-dehydrogenase with nad
81d1npya2
not modelled 10.0 25
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Shikimate dehydrogenase-like
82c3pgjB_
not modelled 10.0 29
PDB header:oxidoreductase
Chain: B: PDB Molecule:shikimate dehydrogenase;
PDBTitle: 2.49 angstrom resolution crystal structure of shikimate 5-2 dehydrogenase (aroe) from vibrio cholerae o1 biovar eltor str. n169613 in complex with shikimate
83c3hfrA_
not modelled 9.8 16
PDB header:isomerase
Chain: A: PDB Molecule:glutamate racemase;
PDBTitle: crystal structure of glutamate racemase from listeria monocytogenes
84c4ug1A_
not modelled 9.7 16
PDB header:cell cycle
Chain: A: PDB Molecule:cell cycle protein gpsb;
PDBTitle: gpsb n-terminal domain
85d1p7na_
not modelled 9.6 15
Fold:Retrovirus capsid protein, N-terminal core domain
Superfamily:Retrovirus capsid protein, N-terminal core domain
Family:Retrovirus capsid protein, N-terminal core domain
86c3cuqA_
not modelled 9.5 17
PDB header:protein transport
Chain: A: PDB Molecule:vacuolar-sorting protein snf8;
PDBTitle: integrated structural and functional model of the human escrt-ii2 complex
87c3pwzA_
not modelled 9.3 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:shikimate dehydrogenase 3;
PDBTitle: crystal structure of an ael1 enzyme from pseudomonas putida
88c2dwuA_
not modelled 9.3 14
PDB header:isomerase
Chain: A: PDB Molecule:glutamate racemase;
PDBTitle: crystal structure of glutamate racemase isoform race1 from bacillus2 anthracis
89c5ybxA_
not modelled 9.2 20
PDB header:dna binding protein
Chain: A: PDB Molecule:bouquet formation protein 4;
PDBTitle: crystal structure of the n-terminal domain of bqt4 in s.pombe
90c5ijwA_
not modelled 9.2 17
PDB header:isomerase
Chain: A: PDB Molecule:glutamate racemase;
PDBTitle: glutamate racemase (muri) from mycobacterium smegmatis with bound d-2 glutamate, 1.8 angstrom resolution, x-ray diffraction
91d1gg2g_
not modelled 9.1 13
Fold:Non-globular all-alpha subunits of globular proteins
Superfamily:Transducin (heterotrimeric G protein), gamma chain
Family:Transducin (heterotrimeric G protein), gamma chain
92c6fxyA_
not modelled 9.0 37
PDB header:transferase
Chain: A: PDB Molecule:procollagen-lysine,2-oxoglutarate 5-dioxygenase 3;
PDBTitle: crystal structure of full-length human lysyl hydroxylase lh3 -2 cocrystal with fe2+, mn2+, udp-gal - structure from long-wavelength3 s-sad
93c5z4yB_
not modelled 9.0 13
PDB header:dna binding protein
Chain: B: PDB Molecule:cys regulon transcriptional activator;
PDBTitle: crystal structure of pacysb ntd domain with space group p4
94d1em9a_
not modelled 9.0 15
Fold:Retrovirus capsid protein, N-terminal core domain
Superfamily:Retrovirus capsid protein, N-terminal core domain
Family:Retrovirus capsid protein, N-terminal core domain
95c2v4xA_
not modelled 8.9 8
PDB header:viral protein
Chain: A: PDB Molecule:capsid protein p27;
PDBTitle: crystal structure of jaagsiekte sheep retrovirus capsid n-2 terminal domain
96c1l6nA_
not modelled 8.7 29
PDB header:viral protein
Chain: A: PDB Molecule:gag polyprotein;
PDBTitle: structure of the n-terminal 283-residue fragment of the hiv-2 1 gag polyprotein
97c4g9qA_
not modelled 8.6 15
PDB header:lyase
Chain: A: PDB Molecule:4-carboxymuconolactone decarboxylase;
PDBTitle: crystal structure of a 4-carboxymuconolactone decarboxylase
98c3gt0A_
not modelled 8.6 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyrroline-5-carboxylate reductase;
PDBTitle: crystal structure of pyrroline 5-carboxylate reductase from bacillus2 cereus. northeast structural genomics consortium target bcr38b
99c1p74B_
not modelled 8.6 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:shikimate 5-dehydrogenase;
PDBTitle: crystal structure of shikimate dehydrogenase (aroe) from haemophilus2 influenzae

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