Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0787_(-)_881462_882421
DateFri Jul 26 01:50:37 BST 2019
Unique Job ID2fdac11d60acf293
SequenceVHRPPWLAQL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:28.628 Y:35.306 Z:20.194
Model (left) based on template c4jwjA_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:trna (guanine(9)-n1)-methyltransferase;
PDBTitle: crystal structure of sctrm10(84)-sah complex
Confidence and coverage
Confidence: 20.3% Coverage: 8%
27 residues ( 8% of your sequence) have been modelled with 20.3% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4jwjA_



20.3 22
PDB header:transferase
Chain: A: PDB Molecule:trna (guanine(9)-n1)-methyltransferase;
PDBTitle: crystal structure of sctrm10(84)-sah complex
2c5nfjA_



19.8 41
PDB header:transferase
Chain: A: PDB Molecule:mitochondrial ribonuclease p protein 1;
PDBTitle: crystal structure of the methyltransferase subunit of human2 mitochondrial ribonuclease p (mrpp1) bound to s-adenosyl-methionine3 (sam)
3c5kx6A_



19.8 18
PDB header:cell adhesion
Chain: A: PDB Molecule:galactoside 2-alpha-l-fucosyltransferase;
PDBTitle: the structure of arabidopsis thaliana fut1 mutant r284k in complex2 with gdp
4d1sv0c_



18.3 38
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:Pointed domain
5c5xknE_



18.0 36
PDB header:transferase/signaling protein
Chain: E: PDB Molecule:epidermal patterning factor-like protein 4;
PDBTitle: crystal structure of plant receptor erl2 in complexe with epfl4
6c5xknF_



18.0 36
PDB header:transferase/signaling protein
Chain: F: PDB Molecule:epidermal patterning factor-like protein 4;
PDBTitle: crystal structure of plant receptor erl2 in complexe with epfl4
7d1jo5a_



17.4 32
Fold:Light-harvesting complex subunits
Superfamily:Light-harvesting complex subunits
Family:Light-harvesting complex subunits
8c4jwhB_



16.1 22
PDB header:transferase
Chain: B: PDB Molecule:trna (guanine(9)-n1)-methyltransferase;
PDBTitle: crystal structure of sptrm10(full length)-sah complex
9d2ve8a1



14.2 29
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:FtsK C-terminal domain-like
10d2iu5a2



14.1 38
Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
11c4fmwA_



12.3 26
PDB header:transferase
Chain: A: PDB Molecule:rna (guanine-9-)-methyltransferase domain-containing
PDBTitle: crystal structure of methyltransferase domain of human rna (guanine-9-2 ) methyltransferase domain containing protein 2
12c1bpoA_



11.6 46
PDB header:membrane protein
Chain: A: PDB Molecule:protein (clathrin);
PDBTitle: clathrin heavy-chain terminal domain and linker
13c1c9lA_



11.5 46
PDB header:endocytosis/exocytosis
Chain: A: PDB Molecule:clathrin;
PDBTitle: peptide-in-groove interactions link target proteins to the b-propeller2 of clathrin
14c2liyA_



10.3 50
PDB header:hormone
Chain: A: PDB Molecule:epidermal patterning factor-like protein 9;
PDBTitle: plant peptide hormone regulating stomatal density
15d1td4a_



9.8 23
Fold:beta-clip
Superfamily:Head decoration protein D (gpD, major capsid protein D)
Family:Head decoration protein D (gpD, major capsid protein D)
16d2j5pa1



9.6 32
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:FtsK C-terminal domain-like
17d1utca2



9.4 46
Fold:7-bladed beta-propeller
Superfamily:Clathrin heavy-chain terminal domain
Family:Clathrin heavy-chain terminal domain
18d2enda_



8.6 50
Fold:T4 endonuclease V
Superfamily:T4 endonuclease V
Family:T4 endonuclease V
19d1jw2a_



8.6 31
Fold:Open three-helical up-and-down bundle
Superfamily:Hemolysin expression modulating protein HHA
Family:Hemolysin expression modulating protein HHA
20c3zbdB_



8.2 78
PDB header:viral protein
Chain: B: PDB Molecule:non-structural protein 1;
PDBTitle: structure of tgev nsp1
21c2i2xO_



not modelled 8.1 70
PDB header:transferase
Chain: O: PDB Molecule:methyltransferase 1;
PDBTitle: crystal structure of methanol:cobalamin methyltransferase complex2 mtabc from methanosarcina barkeri
22c6emvA_



not modelled 7.9 18
PDB header:rna binding protein
Chain: A: PDB Molecule:trna (guanine(9)-/adenine(9)-n1)-methyltransferase;
PDBTitle: crystal structure of dual specific trm10 construct from thermococcus2 kodakaraensis.
23c1xi4D_



not modelled 7.9 46
PDB header:endocytosis/exocytosis
Chain: D: PDB Molecule:clathrin heavy chain;
PDBTitle: clathrin d6 coat
24c4rp3A_



not modelled 7.2 25
PDB header:antitumor protein
Chain: A: PDB Molecule:disks large 1 tumor suppressor protein;
PDBTitle: crystal structure of the l27 domain of discs large 1 (target id2 nysgrc-010766) from drosophila melanogaster bound to a potassium ion3 (space group p212121)
25c1sopA_



not modelled 6.9 67
PDB header:structural protein
Chain: A: PDB Molecule:mini-collagen;
PDBTitle: c-terminal cystine-rich domain of minicollagen-i from hydra
26c2p2uA_



not modelled 6.5 13
PDB header:dna binding protein
Chain: A: PDB Molecule:host-nuclease inhibitor protein gam, putative;
PDBTitle: crystal structure of putative host-nuclease inhibitor protein gam from2 desulfovibrio vulgaris
27c3bm4B_



not modelled 6.2 43
PDB header:hydrolase
Chain: B: PDB Molecule:adp-sugar pyrophosphatase;
PDBTitle: crystal structure of human adp-ribose pyrophosphatase nudt5 in complex2 with magnesium and ampcpr
28d1rsoa_



not modelled 6.1 21
Fold:L27 domain
Superfamily:L27 domain
Family:L27 domain
29d2co5a1



not modelled 6.1 33
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:F93-like
30d1hd6a_



not modelled 5.7 73
Fold:Protozoan pheromone-like
Superfamily:Protozoan pheromone proteins
Family:Protozoan pheromone proteins
31c1hd6A_



not modelled 5.7 73
PDB header:pheromone
Chain: A: PDB Molecule:pheromone er-22;
PDBTitle: pheromone er-22, nmr
32c2kyaA_



not modelled 5.6 88
PDB header:unknown function
Chain: A: PDB Molecule:patellamide protein;
PDBTitle: solution structure of the leader sequence of the patellamide precursor2 peptide, pate1-34

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite