Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0789c_(-)_883454_884053
DateFri Jul 26 01:50:37 BST 2019
Unique Job ID581211a59fdd0fc5
SequenceVSRRAIHSGR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:27.455 Y:26.722 Z:30.961
Model (left) based on template c3f5dA_
Top template information
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein ydea;
PDBTitle: crystal structure of a protein of unknown function from bacillus2 subtilis
Confidence and coverage
Confidence: 39.9% Coverage: 25%
49 residues ( 25% of your sequence) have been modelled with 39.9% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3f5dA_



39.9 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein ydea;
PDBTitle: crystal structure of a protein of unknown function from bacillus2 subtilis
2c3c4rC_



37.8 28
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of an uncharacterized protein encoded by2 cryptic prophage
3d2bosa_



35.7 52
Fold:OB-fold
Superfamily:Bacterial enterotoxins
Family:Bacterial AB5 toxins, B-subunits
4d2fb5a1



34.8 27
Fold:YojJ-like
Superfamily:YojJ-like
Family:YojJ-like
5d2auna2



31.3 20
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:LD-carboxypeptidase A N-terminal domain-like
6c3n7tA_



28.2 10
PDB header:protein binding
Chain: A: PDB Molecule:macrophage binding protein;
PDBTitle: crystal structure of a macrophage binding protein from coccidioides2 immitis
7c4rv7C_



26.2 27
PDB header:transferase
Chain: C: PDB Molecule:diadenylate cyclase;
PDBTitle: characterization of an essential diadenylate cyclase
8c4lruA_



23.1 12
PDB header:lyase
Chain: A: PDB Molecule:glyoxalase iii (glutathione-independent);
PDBTitle: crystal structure of glyoxalase iii (orf 19.251) from candida albicans
9c1trlB_



22.8 35
PDB header:hydrolase (metalloprotease)
Chain: B: PDB Molecule:thermolysin fragment 255 - 316;
PDBTitle: nmr solution structure of the c-terminal fragment 255-3162 of thermolysin: a dimer formed by subunits having the3 native structure
10c3kklA_



22.2 14
PDB header:hydrolase
Chain: A: PDB Molecule:probable chaperone protein hsp33;
PDBTitle: crystal structure of functionally unknown hsp33 from2 saccharomyces cerevisiae
11d1r4pb_



21.4 48
Fold:OB-fold
Superfamily:Bacterial enterotoxins
Family:Bacterial AB5 toxins, B-subunits
12d1gq2a2



20.5 19
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Malic enzyme N-domain
13c6gyyB_



18.9 19
PDB header:transferase
Chain: B: PDB Molecule:diadenylate cyclase;
PDBTitle: crystal structure of daca from staphylococcus aureus, n166c/t172c2 double mutant
14c3gdfA_



18.1 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:probable nadp-dependent mannitol dehydrogenase;
PDBTitle: crystal structure of the nadp-dependent mannitol dehydrogenase from2 cladosporium herbarum.
15d1d1da1



13.2 43
Fold:Acyl carrier protein-like
Superfamily:Retrovirus capsid dimerization domain-like
Family:Retrovirus capsid protein C-terminal domain
16c3hj8A_



11.8 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:catechol 1,2-dioxygenase;
PDBTitle: crystal structure determination of catechol 1,2-dioxygenase from2 rhodococcus opacus 1cp in complex with 4-chlorocatechol
17d2j0wa1



10.8 47
Fold:Carbamate kinase-like
Superfamily:Carbamate kinase-like
Family:PyrH-like
18d1zl0a2



9.1 20
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:LD-carboxypeptidase A N-terminal domain-like
19d1pj3a2



9.1 22
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Malic enzyme N-domain
20d2cdqa1



9.0 47
Fold:Carbamate kinase-like
Superfamily:Carbamate kinase-like
Family:PyrH-like
21c4o0lA_



not modelled 8.7 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadph-dependent 3-quinuclidinone reductase;
PDBTitle: crystal structure of nadph-dependent 3-quinuclidinone reductase from2 rhodotorula rubra
22c3lyhB_



not modelled 8.7 20
PDB header:lyase
Chain: B: PDB Molecule:cobalamin (vitamin b12) biosynthesis cbix protein;
PDBTitle: crystal structure of putative cobalamin (vitamin b12) biosynthesis2 cbix protein (yp_958415.1) from marinobacter aquaeolei vt8 at 1.60 a3 resolution
23c3up8B_



not modelled 8.1 19
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative 2,5-diketo-d-gluconic acid reductase b;
PDBTitle: crystal structure of a putative 2,5-diketo-d-gluconic acid reductase b
24d1xq1a_



not modelled 8.1 25
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
25d1c4qa_



not modelled 8.1 48
Fold:OB-fold
Superfamily:Bacterial enterotoxins
Family:Bacterial AB5 toxins, B-subunits
26d1jbja2



not modelled 7.9 40
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
27d2bura1



not modelled 7.8 25
Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
28d1o0sa2



not modelled 7.7 23
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Malic enzyme N-domain
29d2hmfa1



not modelled 7.2 37
Fold:Carbamate kinase-like
Superfamily:Carbamate kinase-like
Family:PyrH-like
30c5xftA_



not modelled 7.1 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:dehydroascorbate reductase;
PDBTitle: crystal structure of chlamydomonas reinhardtii dehydroascorbate2 reductase
31c6hauA_



not modelled 6.4 15
PDB header:rna binding protein
Chain: A: PDB Molecule:mrna export factor icp27 homolog;
PDBTitle: kshv pan rna mta-response element fragment complexed with the globular2 domain of herpesvirus saimiri orf57
32c3c1nA_



not modelled 6.3 37
PDB header:transferase
Chain: A: PDB Molecule:probable aspartokinase;
PDBTitle: crystal structure of allosteric inhibition threonine-sensitive2 aspartokinase from methanococcus jannaschii with l-threonine
33c2azqA_



not modelled 6.3 26
PDB header:oxidoreductase
Chain: A: PDB Molecule:catechol 1,2-dioxygenase;
PDBTitle: crystal structure of catechol 1,2-dioxygenase from pseudomonas arvilla2 c-1
34c2hsiB_



not modelled 6.3 48
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative peptidase m23;
PDBTitle: crystal structure of putative peptidase m23 from2 pseudomonas aeruginosa, new york structural genomics3 consortium
35c1vw46_



not modelled 6.2 14
PDB header:ribosome
Chain: 6: PDB Molecule:54s ribosomal protein l17, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
36d1g0wa1



not modelled 6.2 28
Fold:Guanido kinase N-terminal domain
Superfamily:Guanido kinase N-terminal domain
Family:Guanido kinase N-terminal domain
37c5ou5C_



not modelled 6.2 18
PDB header:photosynthesis
Chain: C: PDB Molecule:malic enzyme;
PDBTitle: crystal structure of maize chloroplastic photosynthetic nadp(+)-2 dependent malic enzyme
38c2j0wA_



not modelled 5.9 47
PDB header:transferase
Chain: A: PDB Molecule:lysine-sensitive aspartokinase 3;
PDBTitle: crystal structure of e. coli aspartokinase iii in complex2 with aspartate and adp (r-state)
39d1zq1c1



not modelled 5.9 35
Fold:GatB/YqeY motif
Superfamily:GatB/YqeY motif
Family:GatB/GatE C-terminal domain-like
40c5zb3B_



not modelled 5.9 15
PDB header:transcription
Chain: B: PDB Molecule:orf57;
PDBTitle: dimeric crystal structure of orf57 from kshv
41c4z1mJ_



not modelled 5.8 86
PDB header:hydrolase
Chain: J: PDB Molecule:atpase inhibitor, mitochondrial;
PDBTitle: bovine f1-atpase inhibited by three copies of the inhibitor protein2 if1 crystallised in the presence of thiophosphate.
42d1s68a_



not modelled 5.6 14
Fold:ATP-grasp
Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain
Family:RNA ligase
43d2jb0b1



not modelled 5.6 36
Fold:His-Me finger endonucleases
Superfamily:His-Me finger endonucleases
Family:HNH-motif
44c2aw5A_



not modelled 5.5 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadp-dependent malic enzyme;
PDBTitle: crystal structure of a human malic enzyme
45c5vg2B_



not modelled 5.4 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:intradiol ring-cleavage dioxygenase;
PDBTitle: intradiol ring-cleavage dioxygenase from tetranychus urticae
46c4uhpA_



not modelled 5.4 24
PDB header:hydrolase
Chain: A: PDB Molecule:large component of pyocin ap41;
PDBTitle: crystal structure of the pyocin ap41 dnase-immunity complex
47c3pl0B_



not modelled 5.4 26
PDB header:biosynthetic protein
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a bsma homolog (mpe_a2762) from methylobium2 petroleophilum pm1 at 1.91 a resolution
48c3ty8A_



not modelled 5.3 22
PDB header:transferase
Chain: A: PDB Molecule:polynucleotide 2',3'-cyclic phosphate phosphodiesterase /
PDBTitle: crystal structure of c. thermocellum pnkp ligase domain apo form
49c4tt3J_



not modelled 5.2 86
PDB header:hydrolase
Chain: J: PDB Molecule:atpase inhibitor, mitochondrial;
PDBTitle: the pathway of binding of the intrinsically disordered mitochondrial2 inhibitor protein to f1-atpase
50c1xofA_



not modelled 5.1 100
PDB header:de novo protein
Chain: A: PDB Molecule:bbahett1;
PDBTitle: heterooligomeric beta beta alpha miniprotein
51c2jesG_



not modelled 5.1 29
PDB header:viral protein
Chain: G: PDB Molecule:portal protein;
PDBTitle: portal protein (gp6) from bacteriophage spp1
52c1fwxB_



not modelled 5.1 21
PDB header:oxidoreductase
Chain: B: PDB Molecule:nitrous oxide reductase;
PDBTitle: crystal structure of nitrous oxide reductase from p. denitrificans
53c2boyC_



not modelled 5.1 19
PDB header:oxidoreductase
Chain: C: PDB Molecule:3-chlorocatechol 1,2-dioxygenase;
PDBTitle: crystal structure of 3-chlorocatechol 1,2-dioxygenase from rhodococcus2 opacus 1cp

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