Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0798c_(cfp29)_891475_892272
DateFri Jul 26 01:50:38 BST 2019
Unique Job ID245bc07054d26848
SequenceMNNLYRDLAP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:66.799 Y:66.455 Z:46.512
Model (left) based on template c3dktD_
Top template information
PDB header:structural protein/virus like particle
Chain: D: PDB Molecule:maritimacin;
PDBTitle: crystal structure of thermotoga maritima encapsulin
Confidence and coverage
Confidence:100.0% Coverage: 99%
262 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3dktD_



100.0 35
PDB header:structural protein/virus like particle
Chain: D: PDB Molecule:maritimacin;
PDBTitle: crystal structure of thermotoga maritima encapsulin
2c4pt2B_



100.0 23
PDB header:virus like particle
Chain: B: PDB Molecule:encapsulin protein;
PDBTitle: myxococcus xanthus encapsulin protein (enca)
3c2e0zA_



100.0 21
PDB header:virus like particle
Chain: A: PDB Molecule:virus-like particle;
PDBTitle: crystal structure of virus-like particle from pyrococcus2 furiosus
4c5wk1C_



99.3 10
PDB header:virus
Chain: C: PDB Molecule:major capsid protein;
PDBTitle: structure of the major capsid protein and the capsid stabilizing2 protein of the marine siphovirus tw1
5d2ft1a1



99.1 14
Fold:Major capsid protein gp5
Superfamily:Major capsid protein gp5
Family:Major capsid protein gp5
6c1if0A_



98.9 13
PDB header:virus
Chain: A: PDB Molecule:protein (major capsid protein gp5);
PDBTitle: pseudo-atomic model of bacteriophage hk97 procapsid2 (prohead ii)
7c5tjtA_



98.4 12
PDB header:viral protein
Chain: A: PDB Molecule:major capsid protein;
PDBTitle: t5 bacteriophage major capsid protein - one pb8 hexon
8c3jb5C_



98.2 10
PDB header:virus
Chain: C: PDB Molecule:major capsid protein;
PDBTitle: capsid structure of the propionibacterium acnes bacteriophage2 atcc_clear
9c6b0xG_



98.0 8
PDB header:virus
Chain: G: PDB Molecule:major head protein;
PDBTitle: capsid protein and c-terminal part of scaffolding protein in the2 staphylococcus aureus phage 80alpha procapsid
10c4bmlA_



94.2 20
PDB header:virus
Chain: A: PDB Molecule:major capsid protein;
PDBTitle: c-alpha backbone trace of major capsid protein gp39 found in marine2 virus syn5.
11c3p8qF_



93.1 15
PDB header:virus
Chain: F: PDB Molecule:gp5, head protein;
PDBTitle: hk97 prohead i encapsidating inactive virally encoded protease
12c5l35D_



92.3 11
PDB header:virus
Chain: D: PDB Molecule:gene 5 protein;
PDBTitle: cryo-em structure of bacteriophage sf6 at 2.9 angstrom resolution
13c3j7wF_



90.2 14
PDB header:virus
Chain: F: PDB Molecule:major capsid protein 10a;
PDBTitle: capsid expansion mechanism of bacteriophage t7 revealed by multi-state2 atomic models derived from cryo-em reconstructions
14c3j1aE_



86.8 16
PDB header:virus
Chain: E: PDB Molecule:capsid protein;
PDBTitle: hk97-like fold fitted into 3d reconstruction of bacteriophage cw02
15c2xd8F_



70.9 20
PDB header:virus
Chain: F: PDB Molecule:t7-like capsid protein;
PDBTitle: capsid structure of the infectious prochlorococcus cyanophage p-ssp7
16c3bjqA_



59.6 16
PDB header:viral protein
Chain: A: PDB Molecule:phage-related protein;
PDBTitle: crystal structure of a phage-related protein (bb3626) from bordetella2 bronchiseptica rb50 at 2.05 a resolution
17c6hwlB_



34.2 16
PDB header:transferase
Chain: B: PDB Molecule:glucosamine kinase;
PDBTitle: glucosamine kinase in complex with glucosamine, adp and inorganic2 phosphate
18c3izgG_



32.6 19
PDB header:virus
Chain: G: PDB Molecule:major capsid protein 10a;
PDBTitle: bacteriophage t7 prohead shell em-derived atomic model
19c5jy7I_



31.1 21
PDB header:isomerase/transferase
Chain: I: PDB Molecule:maltokinase;
PDBTitle: complex of mycobacterium smegmatis trehalose synthase with maltokinase
20c2v7sA_



30.3 5
PDB header:unknown function
Chain: A: PDB Molecule:probable conserved lipoprotein lppa;
PDBTitle: crystal structure of the putative lipoprotein lppa from2 mycobacterium tuberculosis
21d1g0wa1



not modelled 23.6 18
Fold:Guanido kinase N-terminal domain
Superfamily:Guanido kinase N-terminal domain
Family:Guanido kinase N-terminal domain
22c5hmqE_



not modelled 23.1 19
PDB header:lyase
Chain: E: PDB Molecule:4-hydroxyphenylpyruvate dioxygenase;
PDBTitle: xylose isomerase-like tim barrel/4-hydroxyphenylpyruvate dioxygenase2 fusion protein
23c5jy7K_



not modelled 22.4 19
PDB header:isomerase/transferase
Chain: K: PDB Molecule:maltokinase;
PDBTitle: complex of mycobacterium smegmatis trehalose synthase with maltokinase
24c5ey0A_



not modelled 21.9 21
PDB header:transcription
Chain: A: PDB Molecule:gtp-sensing transcriptional pleiotropic repressor cody;
PDBTitle: crystal structure of cody from staphylococcus aureus with gtp and ile
25d1qh4a1



not modelled 21.0 18
Fold:Guanido kinase N-terminal domain
Superfamily:Guanido kinase N-terminal domain
Family:Guanido kinase N-terminal domain
26d2b0la1



not modelled 19.8 25
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CodY HTH domain
27d1sp9a_



not modelled 19.0 13
Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family:Extradiol dioxygenases
28c1tfzA_



not modelled 18.4 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:4-hydroxyphenylpyruvate dioxygenase;
PDBTitle: structural basis for herbicidal inhibitor selectivity revealed by2 comparison of crystal structures of plant and mammalian 4-3 hydroxyphenylpyruvate dioxygenases
29c1sqiA_



not modelled 18.4 17
PDB header:biosynthetic protein
Chain: A: PDB Molecule:4-hydroxyphenylpyruvic acid dioxygenase;
PDBTitle: structural basis for inhibitor selectivity revealed by2 crystal structures of plant and mammalian 4-3 hydroxyphenylpyruvate dioxygenases
30c2r5vA_



not modelled 17.9 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:pcza361.1;
PDBTitle: hydroxymandelate synthase crystal structure
31d2cqqa1



not modelled 17.4 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Myb/SANT domain
32d1sqda2



not modelled 17.4 13
Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family:Extradiol dioxygenases
33d2i9xa1



not modelled 17.1 14
Fold:SpoVG-like
Superfamily:SpoVG-like
Family:SpoVG-like
34c2i9zB_



not modelled 17.1 14
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative septation protein spovg;
PDBTitle: structural genomics, the crystal structure of full-length spovg from2 staphylococcus epidermidis atcc 12228
35d1sqia2



not modelled 16.7 17
Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family:Extradiol dioxygenases
36c3r5eA_



not modelled 16.5 18
PDB header:transferase
Chain: A: PDB Molecule:transaldolase;
PDBTitle: transaldolase from corynebacterium glutamicum
37c5ey2A_



not modelled 16.1 24
PDB header:transcription
Chain: A: PDB Molecule:gtp-sensing transcriptional pleiotropic repressor cody;
PDBTitle: crystal structure of cody from bacillus cereus
38d1vrpa1



not modelled 15.0 18
Fold:Guanido kinase N-terminal domain
Superfamily:Guanido kinase N-terminal domain
Family:Guanido kinase N-terminal domain
39c5abxB_



not modelled 14.5 31
PDB header:translation
Chain: B: PDB Molecule:4e-binding protein mextli;
PDBTitle: complex of c. elegans eif4e-3 with the 4e-binding protein2 mextli and cap analog
40c2w7nA_



not modelled 12.7 22
PDB header:transcription/dna
Chain: A: PDB Molecule:trfb transcriptional repressor protein;
PDBTitle: crystal structure of kora bound to operator dna: insight into2 repressor cooperation in rp4 gene regulation
41d1piia2



not modelled 12.7 17
Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
42c1piiA_



not modelled 11.8 17
PDB header:bifunctional(isomerase and synthase)
Chain: A: PDB Molecule:n-(5'phosphoribosyl)anthranilate isomerase;
PDBTitle: three-dimensional structure of the bifunctional enzyme2 phosphoribosylanthranilate isomerase: indoleglycerolphosphate3 synthase from escherichia coli refined at 2.0 angstroms resolution
43d2cfxa1



not modelled 11.1 11
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
44d1qm4a3



not modelled 10.9 33
Fold:S-adenosylmethionine synthetase
Superfamily:S-adenosylmethionine synthetase
Family:S-adenosylmethionine synthetase
45d2p02a3



not modelled 10.9 33
Fold:S-adenosylmethionine synthetase
Superfamily:S-adenosylmethionine synthetase
Family:S-adenosylmethionine synthetase
46d1v4ra1



not modelled 10.5 12
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:GntR-like transcriptional regulators
47d1tj1a1



not modelled 10.4 7
Fold:N-terminal domain of bifunctional PutA protein
Superfamily:N-terminal domain of bifunctional PutA protein
Family:N-terminal domain of bifunctional PutA protein
48d1vetb_



not modelled 10.3 12
Fold:Profilin-like
Superfamily:Roadblock/LC7 domain
Family:Roadblock/LC7 domain
49d1cjxa2



not modelled 10.1 14
Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family:Extradiol dioxygenases
50d1i4na_



not modelled 10.1 13
Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
51c1cjxC_



not modelled 10.0 11
PDB header:oxidoreductase
Chain: C: PDB Molecule:4-hydroxyphenylpyruvate dioxygenase;
PDBTitle: crystal structure of pseudomonas fluorescens hppd
52d2cyya1



not modelled 9.9 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
53d2ia9a1



not modelled 9.9 14
Fold:SpoVG-like
Superfamily:SpoVG-like
Family:SpoVG-like
54d1i1ga1



not modelled 9.6 11
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
55c4a5mH_



not modelled 9.4 12
PDB header:transcription
Chain: H: PDB Molecule:uncharacterized hth-type transcriptional regulator yybr;
PDBTitle: redox regulator hypr in its oxidized form
56d1mxaa3



not modelled 9.2 27
Fold:S-adenosylmethionine synthetase
Superfamily:S-adenosylmethionine synthetase
Family:S-adenosylmethionine synthetase
57c5hs9A_



not modelled 9.1 19
PDB header:dna binding protein
Chain: A: PDB Molecule:hth-type transcriptional regulator yodb;
PDBTitle: crystal structure of the quinone-bound yodb from b. subtilis
58d1wlfa1



not modelled 8.9 25
Fold:Cdc48 domain 2-like
Superfamily:Cdc48 domain 2-like
Family:Cdc48 domain 2-like
59c3tqkA_



not modelled 8.8 24
PDB header:transferase
Chain: A: PDB Molecule:phospho-2-dehydro-3-deoxyheptonate aldolase;
PDBTitle: structure of phospho-2-dehydro-3-deoxyheptonate aldolase from2 francisella tularensis schu s4
60d2cg4a1



not modelled 8.6 18
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
61c4le5A_



not modelled 8.6 33
PDB header:transferase
Chain: A: PDB Molecule:s-adenosylmethionine synthetase;
PDBTitle: structure of an unusual s-adenosylmethionine synthetase from2 campylobacter jejuni
62c1i0eD_



not modelled 8.5 16
PDB header:transferase
Chain: D: PDB Molecule:creatine kinase,m chain;
PDBTitle: crystal structure of creatine kinase from human muscle
63c1t47A_



not modelled 8.5 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:4-hydroxyphenylpyruvate dioxygenase;
PDBTitle: structure of fe2-hppd bound to ntbc
64c4wzyA_



not modelled 8.4 21
PDB header:transferase
Chain: A: PDB Molecule:maltokinase;
PDBTitle: structure of mycobacterial maltokinase, the missing link in the2 essential glge-pathway (atp complex)
65c2obvA_



not modelled 8.2 33
PDB header:transferase
Chain: A: PDB Molecule:s-adenosylmethionine synthetase isoform type-1;
PDBTitle: crystal structure of the human s-adenosylmethionine synthetase 1 in2 complex with the product
66c4odjA_



not modelled 8.2 33
PDB header:transferase
Chain: A: PDB Molecule:s-adenosylmethionine synthase;
PDBTitle: crystal structure of a putative s-adenosylmethionine synthetase from2 cryptosporidium hominis in complex with s-adenosyl-methionine
67c3so4C_



not modelled 8.2 33
PDB header:transferase
Chain: C: PDB Molecule:methionine-adenosyltransferase;
PDBTitle: methionine-adenosyltransferase from entamoeba histolytica
68c3rv2B_



not modelled 8.0 27
PDB header:transferase
Chain: B: PDB Molecule:s-adenosylmethionine synthase;
PDBTitle: crystal structure of s-adenosylmethionine synthetase from2 mycobacterium marinum
69c3imlB_



not modelled 8.0 33
PDB header:transferase
Chain: B: PDB Molecule:s-adenosylmethionine synthetase;
PDBTitle: crystal structure of s-adenosylmethionine synthetase from burkholderia2 pseudomallei
70d1e4ft1



not modelled 7.9 11
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
71c1j3wB_



not modelled 7.9 9
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:giding protein-mglb;
PDBTitle: structure of gliding protein-mglb from thermus thermophilus hb8
72d1yyva1



not modelled 7.7 6
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:HxlR-like
73c5h9uC_



not modelled 7.6 33
PDB header:transferase
Chain: C: PDB Molecule:s-adenosylmethionine synthase;
PDBTitle: crystal structure of a thermostable methionine adenosyltransferase
74c1rg9D_



not modelled 7.5 27
PDB header:transferase
Chain: D: PDB Molecule:s-adenosylmethionine synthetase;
PDBTitle: s-adenosylmethionine synthetase complexed with sam and ppnp
75c3nzpA_



not modelled 7.5 13
PDB header:lyase
Chain: A: PDB Molecule:arginine decarboxylase;
PDBTitle: crystal structure of the biosynthetic arginine decarboxylase spea from2 campylobacter jejuni, northeast structural genomics consortium target3 br53
76c4uisA_



not modelled 7.5 30
PDB header:hydrolase
Chain: A: PDB Molecule:gamma-secretase;
PDBTitle: the cryoem structure of human gamma-secretase complex
77c4gcvD_



not modelled 7.4 22
PDB header:transcription
Chain: D: PDB Molecule:putative transcription protein;
PDBTitle: structure of a putative transcription factor (pa1374)from pseudomonas2 aeruginosa
78d1j3wa_



not modelled 7.3 9
Fold:Profilin-like
Superfamily:Roadblock/LC7 domain
Family:Roadblock/LC7 domain
79c3sjaG_



not modelled 7.3 17
PDB header:hydrolase/transport protein
Chain: G: PDB Molecule:golgi to er traffic protein 1;
PDBTitle: crystal structure of s. cerevisiae get3 in the open state in complex2 with get1 cytosolic domain
80c3l32B_



not modelled 7.3 9
PDB header:viral protein
Chain: B: PDB Molecule:phosphoprotein;
PDBTitle: structure of the dimerisation domain of the rabies virus2 phosphoprotein
81c5o9zG_



not modelled 7.2 56
PDB header:splicing
Chain: G: PDB Molecule:pre-mrna-processing factor 6;
PDBTitle: cryo-em structure of a pre-catalytic human spliceosome primed for2 activation (b complex)
82d2fswa1



not modelled 7.1 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:HxlR-like
83d2hzta1



not modelled 6.9 10
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:HxlR-like
84d1t47a2



not modelled 6.8 20
Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family:Extradiol dioxygenases
85d1z7ua1



not modelled 6.8 6
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:HxlR-like
86c2gesA_



not modelled 6.6 19
PDB header:transferase
Chain: A: PDB Molecule:pantothenate kinase;
PDBTitle: pantothenate kinase from mycobacterium tuberculosis (mtpank) in2 complex with a coenzyme a derivative, form-i (rt)
87c3zgjA_



not modelled 6.6 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:4-hydroxyphenylpyruvic acid dioxygenase;
PDBTitle: s221m v223f y359a mutant of 4-hydroxymandelate synthase2 from streptomyces coelicolor
88d1zs4a1



not modelled 6.5 13
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Bacteriophage CII protein
89c3sjbC_



not modelled 6.2 17
PDB header:hydrolase/transport protein
Chain: C: PDB Molecule:golgi to er traffic protein 1;
PDBTitle: crystal structure of s. cerevisiae get3 in the open state in complex2 with get1 cytosolic domain
90d1u7ka_



not modelled 6.1 17
Fold:Retrovirus capsid protein, N-terminal core domain
Superfamily:Retrovirus capsid protein, N-terminal core domain
Family:Retrovirus capsid protein, N-terminal core domain
91c2jppB_



not modelled 5.9 24
PDB header:translation/rna
Chain: B: PDB Molecule:translational repressor;
PDBTitle: structural basis of rsma/csra rna recognition: structure of2 rsme bound to the shine-dalgarno sequence of hcna mrna
92c3nzqB_



not modelled 5.8 13
PDB header:lyase
Chain: B: PDB Molecule:biosynthetic arginine decarboxylase;
PDBTitle: crystal structure of biosynthetic arginine decarboxylase adc (spea)2 from escherichia coli, northeast structural genomics consortium3 target er600
93d1qqga2



not modelled 5.8 19
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Phosphotyrosine-binding domain (PTB)
94c2o6yF_



not modelled 5.7 16
PDB header:lyase
Chain: F: PDB Molecule:putative histidine ammonia-lyase;
PDBTitle: tyrosine ammonia-lyase from rhodobacter sphaeroides
95c4rv7C_



not modelled 5.7 13
PDB header:transferase
Chain: C: PDB Molecule:diadenylate cyclase;
PDBTitle: characterization of an essential diadenylate cyclase
96d1nkga3



not modelled 5.7 50
Fold:Supersandwich
Superfamily:Galactose mutarotase-like
Family:Rhamnogalacturonase B, RhgB, N-terminal domain
97c3sggA_



not modelled 5.6 11
PDB header:hydrolase
Chain: A: PDB Molecule:hypothetical hydrolase;
PDBTitle: crystal structure of a putative hydrolase (bt_2193) from bacteroides2 thetaiotaomicron vpi-5482 at 1.25 a resolution
98c4hsnA_



not modelled 5.5 19
PDB header:transferase
Chain: A: PDB Molecule:3-deoxy-d-arabino-heptulosonate 7-phosphate synthase;
PDBTitle: crystal structure of dah7ps from neisseria meningitidis
99d2f2ea1



not modelled 5.5 9
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:HxlR-like

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