Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0806c_(cpsY)_899735_901333
DateFri Jul 26 01:50:39 BST 2019
Unique Job IDf2dd7cb2c8236a92
SequenceMPKISSRDGG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:41.179 Y:35.085 Z:32.183
Model (left) based on template d1ga8a_
Top template information
Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Galactosyltransferase LgtC
Confidence and coverage
Confidence: 73.0% Coverage: 16%
85 residues ( 16% of your sequence) have been modelled with 73.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1ga8a_



73.0 18
Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Galactosyltransferase LgtC
2c1ga8A_



73.0 18
PDB header:transferase
Chain: A: PDB Molecule:galactosyl transferase lgtc;
PDBTitle: crystal structure of galacosyltransferase lgtc in complex2 with donor and acceptor sugar analogs.
3c2y9jt_



66.8 13
PDB header:protein transport
Chain: T: PDB Molecule:protein prgh;
PDBTitle: three-dimensional model of salmonella's needle complex at subnanometer2 resolution
4d1zvpa2



58.0 13
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:VC0802-like
5d1zhva2



49.3 14
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:Atu0741-like
6c1zvpB_



47.9 13
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein vc0802;
PDBTitle: crystal structure of a protein of unknown function vc0802 from vibrio2 cholerae, possible transport protein
7c1yj7A_



37.5 9
PDB header:protein transport
Chain: A: PDB Molecule:escj;
PDBTitle: crystal structure of enteropathogenic e.coli (epec) type iii secretion2 system protein escj
8c4e8iA_



35.4 11
PDB header:transferase
Chain: A: PDB Molecule:lincosamide resistance protein;
PDBTitle: crystal structure of lincosamide antibiotic adenylyltransferase lina,2 apo
9c2hfvA_



34.1 27
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein rpa1041;
PDBTitle: solution nmr structure of protein rpa1041 from pseudomonas2 aeruginosa. northeast structural genomics consortium3 target pat90.
10c1zcyA_



33.9 12
PDB header:transferase
Chain: A: PDB Molecule:glycogenin-1;
PDBTitle: apo form of a mutant of glycogenin in which asp159 is replaced by ser
11d1vh3a_



29.6 12
Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Cytidylytransferase
12c1r8uA_



26.3 36
PDB header:transcription/transcription activator
Chain: A: PDB Molecule:cbp/p300-interacting transactivator 2;
PDBTitle: nmr structure of cbp taz1/cited2 complex
13c1p4qA_



23.7 32
PDB header:transcription/transferase
Chain: A: PDB Molecule:cbp/p300-interacting transactivator 2;
PDBTitle: solution structure of the cited2 transactivation domain in complex2 with the p300 ch1 domain
14c5l6sF_



23.6 19
PDB header:transferase
Chain: F: PDB Molecule:glucose-1-phosphate adenylyltransferase;
PDBTitle: crystal structure of e. coli adp-glucose pyrophosphorylase (agpase) in2 complex with a positive allosteric regulator beta-fructose-1,6-3 diphosphate (fbp) - agpase*fbp
15d1w77a1



21.7 15
Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Cytidylytransferase
16d2hfva1



21.1 25
Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:RPA1041-like
17c2n37A_



21.1 47
PDB header:unknown function
Chain: A: PDB Molecule:avr-pia protein;
PDBTitle: solution structure of avr-pia
18c5gvvF_



20.2 15
PDB header:transferase
Chain: F: PDB Molecule:glycosyl transferase family 8;
PDBTitle: crystal structure of the glycosyltransferase glye in streptococcus2 pneumoniae tigr4
19c1zhvA_



19.1 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein atu0741;
PDBTitle: x-ray crystal structure protein atu0741 from agobacterium tumefaciens.2 northeast structural genomics consortium target atr8.
20c2xmhB_



18.9 18
PDB header:transferase
Chain: B: PDB Molecule:ctp-inositol-1-phosphate cytidylyltransferase;
PDBTitle: the x-ray structure of ctp:inositol-1-phosphate cytidylyltransferase2 from archaeoglobus fulgidus
21c6bxjA_



not modelled 18.9 46
PDB header:cell adhesion
Chain: A: PDB Molecule:chimera protein of integrin beta-3 and integrin alpha-l;
PDBTitle: structure of a single-chain beta3 integrin
22d1qs0a_



not modelled 18.0 23
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:Branched-chain alpha-keto acid dehydrogenase PP module
23c6ezoF_



not modelled 17.5 16
PDB header:membrane protein
Chain: F: PDB Molecule:translation initiation factor eif-2b subunit gamma;
PDBTitle: eukaryotic initiation factor eif2b in complex with isrib
24c4jd0A_



not modelled 17.4 14
PDB header:transferase
Chain: A: PDB Molecule:nucleotidyl transferase;
PDBTitle: structure of the inositol-1-phosphate ctp transferase from t.2 maritima.
25d2hmfa2



not modelled 16.4 9
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:Aspartokinase allosteric domain-like
26c2fkkA_



not modelled 16.1 15
PDB header:viral protein
Chain: A: PDB Molecule:baseplate structural protein gp10;
PDBTitle: crystal structure of the c-terminal domain of the bacteriophage t42 gene product 10
27c1zctB_



not modelled 15.5 14
PDB header:transferase
Chain: B: PDB Molecule:glycogenin-1;
PDBTitle: structure of glycogenin truncated at residue 270 in a complex with udp
28c6gf8B_



not modelled 15.4 20
PDB header:cell adhesion
Chain: B: PDB Molecule:zona pellucida sperm-binding protein 1,zona pellucida
PDBTitle: molecular basis of egg coat filament cross-linking: structure of the2 glycosylated zp1 zp-n1 domain homodimer
29d1ou0a_



not modelled 14.5 23
Fold:Flavodoxin-like
Superfamily:Precorrin-8X methylmutase CbiC/CobH
Family:Precorrin-8X methylmutase CbiC/CobH
30d1v9ca_



not modelled 14.3 19
Fold:Flavodoxin-like
Superfamily:Precorrin-8X methylmutase CbiC/CobH
Family:Precorrin-8X methylmutase CbiC/CobH
31d1yp2a2



not modelled 14.1 13
Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:glucose-1-phosphate thymidylyltransferase
32d1iioa_



not modelled 14.0 27
Fold:EF Hand-like
Superfamily:Hypothetical protein MTH865
Family:Hypothetical protein MTH865
33c6b5kA_



not modelled 13.1 18
PDB header:transferase
Chain: A: PDB Molecule:glucose-1-phosphate thymidylyltransferase;
PDBTitle: mycobacterium tuberculosis rmla in complex with mg/dttp
34c3mcuF_



not modelled 13.1 15
PDB header:oxidoreductase
Chain: F: PDB Molecule:dipicolinate synthase, b chain;
PDBTitle: crystal structure of the dipicolinate synthase chain b from bacillus2 cereus. northeast structural genomics consortium target bcr215.
35c3wxvA_



not modelled 12.7 18
PDB header:membrane protein/immune system
Chain: A: PDB Molecule:adiponectin receptor protein 1;
PDBTitle: crystal structure of the human adiponectin receptor 1
36d2cdqa3



not modelled 12.5 17
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:Aspartokinase allosteric domain-like
37c3kw0D_



not modelled 12.2 10
PDB header:hydrolase
Chain: D: PDB Molecule:cysteine peptidase;
PDBTitle: crystal structure of cysteine peptidase (np_982244.1) from bacillus2 cereus atcc 10987 at 2.50 a resolution
38d1xg8a_



not modelled 12.0 16
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:YuzD-like
39c5vitC_



not modelled 11.9 15
PDB header:transferase
Chain: C: PDB Molecule:mdcc;
PDBTitle: crystal structure of a pseudomonas malonate decarboxylase hetero-2 tetramer in complex with malonate
40c1junB_



not modelled 11.7 33
PDB header:transcription regulation
Chain: B: PDB Molecule:c-jun homodimer;
PDBTitle: nmr study of c-jun homodimer
41c4ltyD_



not modelled 11.3 8
PDB header:hydrolase
Chain: D: PDB Molecule:exonuclease subunit sbcd;
PDBTitle: crystal structure of e.coli sbcd at 1.8 a resolution
42c4au1A_



not modelled 11.2 8
PDB header:isomerase
Chain: A: PDB Molecule:precorrin-8x methylmutase;
PDBTitle: crystal structure of cobh (precorrin-8x methyl mutase)2 complexed with c5 desmethyl-hba
43d1fxoa_



not modelled 11.1 18
Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:glucose-1-phosphate thymidylyltransferase
44c3m92B_



not modelled 10.3 39
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:protein ycin;
PDBTitle: the structure of ycin, an unchracterized protein from shigella2 flexneri.
45c4wqkA_



not modelled 9.7 18
PDB header:transferase
Chain: A: PDB Molecule:2''-aminoglycoside nucleotidyltransferase;
PDBTitle: crystal structure of aminoglycoside nucleotidylyltransferase ant(2")-2 ia, apo form
46c6c8zA_



not modelled 9.2 25
PDB header:transferase
Chain: A: PDB Molecule:adp-dependent phosphofructokinase;
PDBTitle: last common ancestor of adp-dependent phosphofructokinases from2 methanosarcinales
47c6az5A_



not modelled 9.1 70
PDB header:sugar binding protein
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: crystal structure of cbmd (family cbm41) from eubacterium rectale2 amy13k
48c3qq5A_



not modelled 9.1 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:small gtp-binding protein;
PDBTitle: crystal structure of the [fefe]-hydrogenase maturation protein hydf
49d2guka1



not modelled 9.0 23
Fold:PG1857-like
Superfamily:PG1857-like
Family:PG1857-like
50d1ss6a_



not modelled 9.0 21
Fold:NSFL1 (p97 ATPase) cofactor p47, SEP domain
Superfamily:NSFL1 (p97 ATPase) cofactor p47, SEP domain
Family:NSFL1 (p97 ATPase) cofactor p47, SEP domain
51c3j1wU_



not modelled 8.9 17
PDB header:cell invasion
Chain: U: PDB Molecule:protein prgh;
PDBTitle: a refined model of the prototypical salmonella typhimurium t3ss basal2 body reveals the molecular basis for its assembly
52d2v0fa1



not modelled 8.8 26
Fold:GYF/BRK domain-like
Superfamily:BRK domain-like
Family:BRK domain-like
53d1ll2a_



not modelled 8.8 14
Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Glycogenin
54d1snna_



not modelled 8.8 21
Fold:YrdC/RibB
Superfamily:YrdC/RibB
Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
55d1kxpd3



not modelled 8.8 21
Fold:Serum albumin-like
Superfamily:Serum albumin-like
Family:Serum albumin-like
56d2fj6a1



not modelled 8.8 13
Fold:SAM domain-like
Superfamily:YozE-like
Family:YozE-like
57d1lkta_



not modelled 8.7 13
Fold:Head-binding domain of phage P22 tailspike protein
Superfamily:Head-binding domain of phage P22 tailspike protein
Family:Head-binding domain of phage P22 tailspike protein
58c5i2cA_



not modelled 8.6 10
PDB header:signaling protein
Chain: A: PDB Molecule:gats-like protein 3;
PDBTitle: arginine-bound castor1 from homo sapiens
59c5ifgC_



not modelled 8.5 15
PDB header:hydrolase/antitoxin
Chain: C: PDB Molecule:mrna interferase higb;
PDBTitle: crystal structure of higa-higb complex from e. coli
60c5b04I_



not modelled 8.5 12
PDB header:translation
Chain: I: PDB Molecule:probable translation initiation factor eif-2b subunit
PDBTitle: crystal structure of the eukaryotic translation initiation factor 2b2 from schizosaccharomyces pombe
61c4cvhA_



not modelled 8.5 23
PDB header:transferase
Chain: A: PDB Molecule:isoprenoid synthase domain-containing protein;
PDBTitle: crystal structure of human isoprenoid synthase domain-containing2 protein
62c5z34A_



not modelled 8.5 19
PDB header:hydrolase
Chain: A: PDB Molecule:chitin deacetylase;
PDBTitle: the structure of a chitin deacetylase from bombyx mori provide the2 first insight into insect chitin deacetylation mechanism
63c5znsA_



not modelled 8.5 15
PDB header:hydrolase
Chain: A: PDB Molecule:chitin deacetylase;
PDBTitle: insect chitin deacetylase
64c3drwA_



not modelled 8.4 13
PDB header:transferase
Chain: A: PDB Molecule:adp-specific phosphofructokinase;
PDBTitle: crystal structure of a phosphofructokinase from pyrococcus horikoshii2 ot3 with amp
65c4kkpA_



not modelled 8.4 12
PDB header:structural protein
Chain: A: PDB Molecule:rbma protein;
PDBTitle: crystal structure of vibrio cholerae rbma (crystal form 2)
66c3s1tB_



not modelled 8.4 15
PDB header:transferase
Chain: B: PDB Molecule:aspartokinase;
PDBTitle: structure of the regulatory domain of aspartokinase (rv3709c; ak-beta)2 in complex with threonine from mycobacterium tuberculosis
67c2afvB_



not modelled 8.3 27
PDB header:isomerase
Chain: B: PDB Molecule:cobalamin biosynthesis precorrin isomerase;
PDBTitle: the crystal structure of putative precorrin isomerase cbic2 in cobalamin biosynthesis
68d2nxfa1



not modelled 7.7 13
Fold:Metallo-dependent phosphatases
Superfamily:Metallo-dependent phosphatases
Family:ADPRibase-Mn-like
69c5w65P_



not modelled 7.7 16
PDB header:transcription
Chain: P: PDB Molecule:rna polymerase i-specific transcription initiation factor
PDBTitle: rna polymerase i initial transcribing complex state 2
70c3tqdA_



not modelled 7.7 16
PDB header:transferase
Chain: A: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase;
PDBTitle: structure of the 3-deoxy-d-manno-octulosonate cytidylyltransferase2 (kdsb) from coxiella burnetii
71d1vaza_



not modelled 7.6 21
Fold:NSFL1 (p97 ATPase) cofactor p47, SEP domain
Superfamily:NSFL1 (p97 ATPase) cofactor p47, SEP domain
Family:NSFL1 (p97 ATPase) cofactor p47, SEP domain
72c2p73A_



not modelled 7.5 14
PDB header:transferase
Chain: A: PDB Molecule:putative glycosyltransferase (mannosyltransferase) involved
PDBTitle: crystal structure of a glycosyltransferase involved in the2 glycosylation of the major capsid of pbcv-1
73d1nc7a_



not modelled 7.4 25
Fold:Hypothetical protein TM1070
Superfamily:Hypothetical protein TM1070
Family:Hypothetical protein TM1070
74c5y59B_



not modelled 7.4 21
PDB header:protein binding
Chain: B: PDB Molecule:atp-dependent dna helicase ii subunit 2;
PDBTitle: crystal structure of ku80 and sir4
75c2mhcA_



not modelled 7.3 11
PDB header:recombination
Chain: A: PDB Molecule:tnpx;
PDBTitle: nmr structure of the catalytic domain of the large serine resolvase2 tnpx
76d1vmha_



not modelled 6.9 17
Fold:YjbQ-like
Superfamily:YjbQ-like
Family:YjbQ-like
77d1ny711



not modelled 6.8 19
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Comoviridae-like VP
78d1pgl11



not modelled 6.8 25
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Comoviridae-like VP
79d1ewqa2



not modelled 6.8 15
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
80c2re1A_



not modelled 6.8 15
PDB header:transferase
Chain: A: PDB Molecule:aspartokinase, alpha and beta subunits;
PDBTitle: crystal structure of aspartokinase alpha and beta subunits
81d2h80a1



not modelled 6.5 33
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:Variant SAM domain
82d1f2va_



not modelled 6.5 12
Fold:Flavodoxin-like
Superfamily:Precorrin-8X methylmutase CbiC/CobH
Family:Precorrin-8X methylmutase CbiC/CobH
83d1jeya2



not modelled 6.5 27
Fold:vWA-like
Superfamily:vWA-like
Family:Ku70 subunit N-terminal domain
84d1ul3a_



not modelled 6.4 16
Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Prokaryotic signal transducing protein
85c5k27B_



not modelled 6.4 19
PDB header:transferase
Chain: B: PDB Molecule:ancmt;
PDBTitle: crystal structure of ancestral protein ancmt of adp-dependent sugar2 kinases family.
86c6f2sB_



not modelled 6.3 18
PDB header:virus
Chain: B: PDB Molecule:capsid protein;
PDBTitle: cryoem structure of ageratum yellow vein virus (ayvv)
87c3e7dC_



not modelled 6.3 19
PDB header:isomerase
Chain: C: PDB Molecule:cobh, precorrin-8x methylmutase;
PDBTitle: crystal structure of precorrin-8x methyl mutase cbic/cobh from2 brucella melitensis
88d2nn6c2



not modelled 6.3 13
Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
89d3ci0j1



not modelled 6.2 18
Fold:Pili subunits
Superfamily:Pili subunits
Family:EpsJ-like
90c6g41J_



not modelled 6.2 63
PDB header:viral protein
Chain: J: PDB Molecule:minor capsid protein;
PDBTitle: crystal structure of semet-labeled mavirus penton protein
91c3kxqB_



not modelled 6.1 12
PDB header:isomerase
Chain: B: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of triosephosphate isomerase from bartonella2 henselae at 1.6a resolution
92c4egvC_



not modelled 6.0 18
PDB header:transferase
Chain: C: PDB Molecule:acetyl-coa acetyltransferase;
PDBTitle: crystal structure of a monomeric scp2-thiolase like protein type 12 (stlp1) from mycobacterium smegmatis
93d1vg5a_



not modelled 6.0 22
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
94c4hrzA_



not modelled 5.9 31
PDB header:hydrolase
Chain: A: PDB Molecule:tail lysozyme;
PDBTitle: phage t4 sheath initiation protein gp25
95c6gnyA_



not modelled 5.9 36
PDB header:structural protein
Chain: A: PDB Molecule:membrane-anchored junction protein;
PDBTitle: crystal structure of the majin-terb2 heterotetrameric complex
96d1ju8a_



not modelled 5.8 18
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:omega toxin-like
Family:Albumin 1
97d3erja1



not modelled 5.8 13
Fold:Peptidyl-tRNA hydrolase II
Superfamily:Peptidyl-tRNA hydrolase II
Family:Peptidyl-tRNA hydrolase II
98d1v95a_



not modelled 5.7 12
Fold:Anticodon-binding domain-like
Superfamily:Class II aaRS ABD-related
Family:Anticodon-binding domain of Class II aaRS
99d1p8ba_



not modelled 5.7 27
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:omega toxin-like
Family:Albumin 1

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