Phyre 2 Results for RVBD0810c_(-)_904908

Email	mdejesus@rockefeller.edu
Description	RVBD0810c_(-)_904908_905090
Date	Fri Jul 26 01:50:39 BST 2019
Unique Job ID	43d29a4a8e434c34
Sequence	MGRGRAKAKQ ... Download FASTA
Job Type	normal
Job Expiry

Summary

Top model

Image coloured by rainbow N → C terminus

Model dimensions (Å):

X:20.573 Y:32.616 Z:20.410

Model (left) based on template c1trlB_

Top template information

PDB header:hydrolase (metalloprotease)
Chain: B: PDB Molecule:thermolysin fragment 255 - 316;
PDBTitle: nmr solution structure of the c-terminal fragment 255-3162 of thermolysin: a dimer formed by subunits having the3 native structure

Confidence and coverage

Confidence:

26.4%

Coverage:

53%

32 residues ( 53% of your sequence) have been modelled with 26.4% confidence by the single highest scoring template.

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3D viewing

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Sequence analysis

Download FASTA version

Secondary structure and disorder prediction [Show]

Domain analysis [Show]

Rank Aligned region

PDB 1trl chain B

3D model

Region: 2 - 33
Aligned: 32
Modelled: 32
Confidence: 26.4%
Identity: 25%
PDB header:hydrolase (metalloprotease)
Chain: B: PDB Molecule:thermolysin fragment 255 - 316;
PDBTitle: nmr solution structure of the c-terminal fragment 255-3162 of thermolysin: a dimer formed by subunits having the3 native structure

Phyre2

PDB 5w3g chain A

3D model

Region: 12 - 33
Aligned: 22
Modelled: 22
Confidence: 12.4%
Identity: 23%
PDB header:dna binding protein
Chain: A: PDB Molecule:transcription factor pu.1;
PDBTitle: solution structure of ets transcription factor pu.1

Phyre2

PDB 2yy3 chain B

3D model

Region: 21 - 33
Aligned: 13
Modelled: 13
Confidence: 12.4%
Identity: 23%
PDB header:translation
Chain: B: PDB Molecule:elongation factor 1-beta;
PDBTitle: crystal structure of translation elongation factor ef-1 beta from2 pyrococcus horikoshii

Phyre2

PDB 6bv7 chain A

3D model

Region: 11 - 30
Aligned: 20
Modelled: 20
Confidence: 10.3%
Identity: 25%
PDB header:membrane protein
Chain: A: PDB Molecule:sodium/calcium exchanger 1;
PDBTitle: nmr structure of sodium/calcium exchanger 1 (ncx1) two-helix bundle2 (thb) domain

Phyre2

PDB 1gh8 chain A

3D model

Region: 16 - 33
Aligned: 18
Modelled: 18
Confidence: 8.0%
Identity: 28%
Fold: Ferredoxin-like
Superfamily: eEF-1beta-like
Family: eEF-1beta-like

Phyre2

PDB 1f60 chain B

Region: 16 - 35
Aligned: 20
Modelled: 20
Confidence: 6.5%
Identity: 10%
Fold: Ferredoxin-like
Superfamily: eEF-1beta-like
Family: eEF-1beta-like

Phyre2

PDB 2lxm chain B

3D model

Region: 21 - 33
Aligned: 13
Modelled: 13
Confidence: 6.2%
Identity: 38%
PDB header:protein transport
Chain: B: PDB Molecule:charged multivesicular body protein 5;
PDBTitle: lip5-chmp5

Phyre2

PDB 5z62 chain N

Region: 16 - 32
Aligned: 17
Modelled: 17
Confidence: 5.8%
Identity: 29%
PDB header:electron transport
Chain: N: PDB Molecule:cytochrome c oxidase subunit ndufa4;
PDBTitle: structure of human cytochrome c oxidase

Phyre2

1
c1trlB_

2
c5w3gA_

3
c2yy3B_

4
c6bv7A_

5
d1gh8a_

6
d1f60b_

7
c2lxmB_

8
c5z62N_