Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0811c_(-)_905237_906343
DateFri Jul 26 01:50:39 BST 2019
Unique Job IDb54626cf4e8ad016
SequenceVAAVPAPDPG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:42.822 Y:56.149 Z:64.985
Model (left) based on template c1pj6A_
Top template information
PDB header:oxidoreductase
Chain: A: PDB Molecule:n,n-dimethylglycine oxidase;
PDBTitle: crystal structure of dimethylglycine oxidase of arthrobacter2 globiformis in complex with folic acid
Confidence and coverage
Confidence:100.0% Coverage: 92%
339 residues ( 92% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1pj6A_



100.0 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:n,n-dimethylglycine oxidase;
PDBTitle: crystal structure of dimethylglycine oxidase of arthrobacter2 globiformis in complex with folic acid
2c4p9sA_



100.0 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:dimethylglycine dehydrogenase;
PDBTitle: crystal structure of the mature form of rat dmgdh
3c3girA_



100.0 18
PDB header:transferase
Chain: A: PDB Molecule:aminomethyltransferase;
PDBTitle: crystal structure of glycine cleavage system2 aminomethyltransferase t from bartonella henselae
4c1worA_



100.0 20
PDB header:transferase
Chain: A: PDB Molecule:aminomethyltransferase;
PDBTitle: crystal structure of t-protein of the glycine cleavage2 system
5c1x31A_



100.0 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:sarcosine oxidase alpha subunit;
PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96
6c1vloA_



100.0 19
PDB header:transferase
Chain: A: PDB Molecule:aminomethyltransferase;
PDBTitle: crystal structure of aminomethyltransferase (t protein;2 tetrahydrofolate-dependent) of glycine cleavage system (np417381)3 from escherichia coli k12 at 1.70 a resolution
7c1v5vA_



100.0 19
PDB header:transferase
Chain: A: PDB Molecule:aminomethyltransferase;
PDBTitle: crystal structure of a component of glycine cleavage system: t-protein2 from pyrococcus horikoshii ot3 at 1.5 a resolution
8c1wsrA_



100.0 22
PDB header:transferase
Chain: A: PDB Molecule:aminomethyltransferase;
PDBTitle: crystal structure of human t-protein of glycine cleavage2 system
9c1yx2B_



100.0 21
PDB header:transferase
Chain: B: PDB Molecule:aminomethyltransferase;
PDBTitle: crystal structure of the probable aminomethyltransferase2 from bacillus subtilis
10c3tfhB_



100.0 14
PDB header:transferase
Chain: B: PDB Molecule:gcvt-like aminomethyltransferase protein;
PDBTitle: dmsp-dependent demethylase from p. ubique - apo
11c5tl4C_



100.0 19
PDB header:transferase
Chain: C: PDB Molecule:vanillate/3-o-methylgallate o-demethylase;
PDBTitle: crystal structure of sphingomonas paucimobilis aryl o-demethylase ligm
12c1vlyA_



100.0 19
PDB header:transferase
Chain: A: PDB Molecule:unknown protein from 2d-page;
PDBTitle: crystal structure of a putative aminomethyltransferase (ygfz) from2 escherichia coli at 1.30 a resolution
13c5oliA_



100.0 21
PDB header:protein binding
Chain: A: PDB Molecule:putative transferase caf17, mitochondrial;
PDBTitle: crystal structure of human iba57
14d1vloa2



100.0 20
Fold:Folate-binding domain
Superfamily:Folate-binding domain
Family:Aminomethyltransferase folate-binding domain
15d1wosa2



100.0 19
Fold:Folate-binding domain
Superfamily:Folate-binding domain
Family:Aminomethyltransferase folate-binding domain
16d1pj5a4



100.0 20
Fold:Folate-binding domain
Superfamily:Folate-binding domain
Family:Aminomethyltransferase folate-binding domain
17d1v5va2



100.0 18
Fold:Folate-binding domain
Superfamily:Folate-binding domain
Family:Aminomethyltransferase folate-binding domain
18d1vlya2



100.0 18
Fold:Folate-binding domain
Superfamily:Folate-binding domain
Family:Aminomethyltransferase folate-binding domain
19c2gagC_



99.9 13
PDB header:oxidoreductase
Chain: C: PDB Molecule:heterotetrameric sarcosine oxidase gamma-subunit;
PDBTitle: heteroteterameric sarcosine: structure of a diflavin metaloenzyme at2 1.85 a resolution
20d1pj5a1



99.4 17
Fold:Elongation factor/aminomethyltransferase common domain
Superfamily:Aminomethyltransferase beta-barrel domain
Family:Aminomethyltransferase beta-barrel domain
21d1wosa1



not modelled 99.2 24
Fold:Elongation factor/aminomethyltransferase common domain
Superfamily:Aminomethyltransferase beta-barrel domain
Family:Aminomethyltransferase beta-barrel domain
22c6ah3B_



not modelled 99.2 18
PDB header:hydrolase/rna
Chain: B: PDB Molecule:ribonucleases p/mrp protein subunit pop1;
PDBTitle: cryo-em structure of yeast ribonuclease p with pre-trna substrate
23d1v5va1



not modelled 99.2 17
Fold:Elongation factor/aminomethyltransferase common domain
Superfamily:Aminomethyltransferase beta-barrel domain
Family:Aminomethyltransferase beta-barrel domain
24c6ahrB_



not modelled 99.1 23
PDB header:hydrolase/rna
Chain: B: PDB Molecule:ribonucleases p/mrp protein subunit pop1;
PDBTitle: cryo-em structure of human ribonuclease p
25d1vloa1



not modelled 99.1 20
Fold:Elongation factor/aminomethyltransferase common domain
Superfamily:Aminomethyltransferase beta-barrel domain
Family:Aminomethyltransferase beta-barrel domain
26d1vlya1



not modelled 97.2 20
Fold:Elongation factor/aminomethyltransferase common domain
Superfamily:Aminomethyltransferase beta-barrel domain
Family:Aminomethyltransferase beta-barrel domain
27c1xzqA_



not modelled 93.3 17
PDB header:hydrolase
Chain: A: PDB Molecule:probable trna modification gtpase trme;
PDBTitle: structure of the gtp-binding protein trme from thermotoga2 maritima complexed with 5-formyl-thf
28c3gehA_



not modelled 92.8 5
PDB header:hydrolase
Chain: A: PDB Molecule:trna modification gtpase mnme;
PDBTitle: crystal structure of mnme from nostoc in complex with gdp, folinic2 acid and zn
29d1xzpa3



not modelled 92.6 15
Fold:Folate-binding domain
Superfamily:Folate-binding domain
Family:TrmE formyl-THF-binding domain
30c1xzqB_



not modelled 92.6 17
PDB header:hydrolase
Chain: B: PDB Molecule:probable trna modification gtpase trme;
PDBTitle: structure of the gtp-binding protein trme from thermotoga2 maritima complexed with 5-formyl-thf
31c3geiB_



not modelled 91.9 9
PDB header:hydrolase
Chain: B: PDB Molecule:trna modification gtpase mnme;
PDBTitle: crystal structure of mnme from chlorobium tepidum in complex2 with gcp
32c2i5nH_



not modelled 35.5 18
PDB header:photosynthesis
Chain: H: PDB Molecule:reaction center protein h chain;
PDBTitle: 1.96 a x-ray structure of photosynthetic reaction center from2 rhodopseudomonas viridis:crystals grown by microfluidic technique
33d1eysh1



not modelled 32.2 13
Fold:PRC-barrel domain
Superfamily:PRC-barrel domain
Family:Photosynthetic reaction centre, H-chain, cytoplasmic domain
34c1eysH_



not modelled 28.7 13
PDB header:electron transport
Chain: H: PDB Molecule:photosynthetic reaction center;
PDBTitle: crystal structure of photosynthetic reaction center from a2 thermophilic bacterium, thermochromatium tepidum
35c5uw8C_



not modelled 28.0 19
PDB header:transport protein
Chain: C: PDB Molecule:probable phospholipid abc transporter-binding protein mlad;
PDBTitle: structure of e. coli mce protein mlad, core mce domain
36c3l48B_



not modelled 26.5 24
PDB header:transport protein
Chain: B: PDB Molecule:outer membrane usher protein papc;
PDBTitle: crystal structure of the c-terminal domain of the papc usher
37c5uvnE_



not modelled 23.2 15
PDB header:transport protein
Chain: E: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
38c5uvnB_



not modelled 23.2 15
PDB header:transport protein
Chain: B: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
39c5uvnA_



not modelled 23.2 15
PDB header:transport protein
Chain: A: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
40c5uvnC_



not modelled 23.2 15
PDB header:transport protein
Chain: C: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
41c5uvnF_



not modelled 23.2 15
PDB header:transport protein
Chain: F: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
42c5uvnD_



not modelled 23.2 15
PDB header:transport protein
Chain: D: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
43d1w4ma_



not modelled 19.9 11
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:DEP domain
44d2i5nh1



not modelled 19.0 18
Fold:PRC-barrel domain
Superfamily:PRC-barrel domain
Family:Photosynthetic reaction centre, H-chain, cytoplasmic domain
45d3bzka5



not modelled 16.1 16
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Tex RuvX-like domain-like
46d1rzhh1



not modelled 15.7 9
Fold:PRC-barrel domain
Superfamily:PRC-barrel domain
Family:Photosynthetic reaction centre, H-chain, cytoplasmic domain
47c2ysrA_



not modelled 15.4 30
PDB header:signaling protein
Chain: A: PDB Molecule:dep domain-containing protein 1;
PDBTitle: solution structure of the dep domain from human dep domain-2 containing protein 1
48c6ic4C_



not modelled 11.7 16
PDB header:protein transport
Chain: C: PDB Molecule:toluene tolerance efflux transporter (abc superfamily,
PDBTitle: cryo-em structure of the a. baumannii mla complex at 8.7 a resolution
49d1uhwa_



not modelled 10.5 9
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:DEP domain
50c5d5pC_



not modelled 9.5 28
PDB header:transferase
Chain: C: PDB Molecule:hcgb;
PDBTitle: hcgb from methanococcus maripaludis
51d1fsha_



not modelled 9.2 20
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:DEP domain
52d2hjsa1



not modelled 7.8 25
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
53c3brcA_



not modelled 7.4 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved protein of unknown function;
PDBTitle: crystal structure of a conserved protein of unknown function from2 methanobacterium thermoautotrophicum
54c3zbqA_



not modelled 7.1 8
PDB header:viral protein
Chain: A: PDB Molecule:phikz039;
PDBTitle: protofilament of tubz from bacteriophage phikz
55d1rmva_



not modelled 6.9 14
Fold:Four-helical up-and-down bundle
Superfamily:TMV-like viral coat proteins
Family:TMV-like viral coat proteins
56c3kmlB_



not modelled 6.7 10
PDB header:viral protein
Chain: B: PDB Molecule:coat protein;
PDBTitle: circular permutant of the tobacco mosaic virus
57d2csoa1



not modelled 6.6 9
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:DEP domain
58c5oqmh_



not modelled 6.5 28
PDB header:transcription
Chain: H: PDB Molecule:dna-directed rna polymerases i, ii, and iii subunit rpabc3;
PDBTitle: structure of yeast transcription pre-initiation complex with tfiih and2 core mediator
59d1ukfa_



not modelled 6.4 7
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Avirulence protein Avrpph3
60c3jc6E_



not modelled 6.4 11
PDB header:replication
Chain: E: PDB Molecule:cell division control protein 45;
PDBTitle: structure of the eukaryotic replicative cmg helicase and pumpjack2 motion
61d1vqod1



not modelled 6.2 15
Fold:RL5-like
Superfamily:RL5-like
Family:Ribosomal protein L5
62c2l37A_



not modelled 5.9 36
PDB header:hydrolase
Chain: A: PDB Molecule:ribosome-inactivating protein luffin p1;
PDBTitle: 3d solution structure of arginine/glutamate-rich polypeptide luffin p12 from the seeds of sponge gourd (luffa cylindrical)
63c3r66A_



not modelled 5.7 23
PDB header:viral protein/antiviral protein
Chain: A: PDB Molecule:non-structural protein 1;
PDBTitle: crystal structure of human isg15 in complex with ns1 n-terminal region2 from influenza virus b, northeast structural genomics consortium3 target ids hx6481, hr2873, and or2
64d2hxja1



not modelled 5.7 18
Fold:FinO-like
Superfamily:FinO-like
Family:FinO-like
65c6fxdB_



not modelled 5.7 15
PDB header:biosynthetic protein
Chain: B: PDB Molecule:mupz;
PDBTitle: crystal structure of mupz from pseudomonas fluorescens
66d1iq4a_



not modelled 5.6 20
Fold:RL5-like
Superfamily:RL5-like
Family:Ribosomal protein L5
67d2zjrd1



not modelled 5.5 18
Fold:RL5-like
Superfamily:RL5-like
Family:Ribosomal protein L5
68c6o3sA_



not modelled 5.5 36
PDB header:plant protein, hydrolase
Chain: A: PDB Molecule:ribosome-inactivating protein luffin p1;
PDBTitle: nmr solution structure of vicilin-buried peptide-8 (vbp-8)
69d1ei7a_



not modelled 5.3 10
Fold:Four-helical up-and-down bundle
Superfamily:TMV-like viral coat proteins
Family:TMV-like viral coat proteins
70d1v3fa_



not modelled 5.2 14
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:DEP domain
71c2hxjF_



not modelled 5.2 18
PDB header:structural genomics, unknown function
Chain: F: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a protein of unknown function nmb1681 from2 neisseria meningitidis mc58, possible nucleic acid binding protein
72d1a7ia1



not modelled 5.2 10
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
73c3htrB_



not modelled 5.1 32
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized prc-barrel domain protein;
PDBTitle: crystal structure of prc-barrel domain protein from2 rhodopseudomonas palustris

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