Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0812_(-)_906426_907295
DateFri Jul 26 01:50:39 BST 2019
Unique Job ID3a0f0e734bf23f15
SequenceVVVTLDGEIL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:52.462 Y:44.427 Z:58.343
Model (left) based on template c4ce5A_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:at-omegata;
PDBTitle: first crystal structure of an (r)-selective omega-transaminase2 from aspergillus terreus
Confidence and coverage
Confidence:100.0% Coverage: 93%
269 residues ( 93% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4ce5A_
100.0 19
PDB header:transferase
Chain: A: PDB Molecule:at-omegata;
PDBTitle: first crystal structure of an (r)-selective omega-transaminase2 from aspergillus terreus
2c3wwjE_
100.0 19
PDB header:transferase
Chain: E: PDB Molecule:(r)-amine transaminase;
PDBTitle: crystal structure of an engineered sitagliptin-producing transaminase,2 ata-117-rd11
3c4tviB_
100.0 19
PDB header:transferase
Chain: B: PDB Molecule:aminotransferase, class iv;
PDBTitle: x-ray crystal structure of an aminotransferase from brucella abortus2 bound to the co-factor plp
4c5cm0A_
100.0 24
PDB header:transferase
Chain: A: PDB Molecule:branched-chain transaminase;
PDBTitle: crystal structure of branched-chain aminotransferase from thermophilic2 archaea geoglobus acetivorans
5d1i2ka_
100.0 20
Fold:D-aminoacid aminotransferase-like PLP-dependent enzymes
Superfamily:D-aminoacid aminotransferase-like PLP-dependent enzymes
Family:D-aminoacid aminotransferase-like PLP-dependent enzymes
6c3u0gA_
100.0 18
PDB header:transferase
Chain: A: PDB Molecule:putative branched-chain amino acid aminotransferase ilve;
PDBTitle: crystal structure of branched-chain amino acid aminotransferase from2 burkholderia pseudomallei
7d1iyea_
100.0 21
Fold:D-aminoacid aminotransferase-like PLP-dependent enzymes
Superfamily:D-aminoacid aminotransferase-like PLP-dependent enzymes
Family:D-aminoacid aminotransferase-like PLP-dependent enzymes
8c1wrvB_
100.0 17
PDB header:transferase
Chain: B: PDB Molecule:branched-chain amino acid aminotransferase;
PDBTitle: crystal structure of t.th.hb8 branched-chain amino acid2 aminotransferase
9c5ce8B_
100.0 21
PDB header:transferase
Chain: B: PDB Molecule:branched-chain amino acid aminotransferase;
PDBTitle: crystal structure of branched-chain aminotransferase from thermophilic2 archaea thermoproteus uzoniensis
10d1daaa_
100.0 19
Fold:D-aminoacid aminotransferase-like PLP-dependent enzymes
Superfamily:D-aminoacid aminotransferase-like PLP-dependent enzymes
Family:D-aminoacid aminotransferase-like PLP-dependent enzymes
11c5k3wA_
100.0 42
PDB header:transferase
Chain: A: PDB Molecule:cputa1;
PDBTitle: structural characterisation of fold iv-transaminase, cputa1, from2 curtobacterium pusillum
12c6h65A_
100.0 18
PDB header:transferase
Chain: A: PDB Molecule:branched-chain-amino-acid aminotransferase;
PDBTitle: crystal structure of the branched-chain-amino-acid aminotransferase2 from haliangium ochraceum
13c2xpfB_
100.0 25
PDB header:lyase
Chain: B: PDB Molecule:4-amino-4-deoxychorismate lyase;
PDBTitle: crystal structure of putative aminodeoxychorismate lyase2 from pseudomonas aeruginosa
14c3cswB_
100.0 19
PDB header:transferase
Chain: B: PDB Molecule:putative branched-chain-amino-acid aminotransferase;
PDBTitle: crystal structure of a putative branched-chain amino acid2 aminotransferase (tm0831) from thermotoga maritima at 2.15 a3 resolution
15c6nstD_
100.0 22
PDB header:transferase
Chain: D: PDB Molecule:branched-chain-amino-acid aminotransferase;
PDBTitle: crystal structure of branched chain amino acid aminotransferase from2 pseudomonas aeruginosa
16c6gkrC_
100.0 19
PDB header:transferase
Chain: C: PDB Molecule:branched-chain-amino-acid aminotransferase;
PDBTitle: crystal structure of branched-chain amino acid aminotransferase from2 thermobaculum terrenum in plp-form (holo-form)
17c4m0jA_
100.0 28
PDB header:transferase
Chain: A: PDB Molecule:d-amino acid aminotransferase;
PDBTitle: crystal structure of a d-amino acid aminotransferase from burkholderia2 thailandensis e264
18c6bb9A_
100.0 22
PDB header:lyase
Chain: A: PDB Molecule:4-amino-4-deoxychorismate lyase;
PDBTitle: the crystal structure of 4-amino-4-deoxychorismate lyase from2 salmonella typhimurium lt2
19c4jxuB_
100.0 21
PDB header:transferase
Chain: B: PDB Molecule:putative aminotransferase;
PDBTitle: structure of aminotransferase ilve2 from sinorhizobium meliloti2 complexed with plp
20c3dtfB_
100.0 21
PDB header:transferase
Chain: B: PDB Molecule:branched-chain amino acid aminotransferase;
PDBTitle: structural analysis of mycobacterial branched chain aminotransferase-2 implications for inhibitor design
21c4dqnA_
not modelled 100.0 18
PDB header:transferase
Chain: A: PDB Molecule:putative branched-chain amino acid aminotransferase ilve;
PDBTitle: crystal structure of the branched-chain aminotransferase from2 streptococcus mutans
22d2a1ha1
not modelled 100.0 18
Fold:D-aminoacid aminotransferase-like PLP-dependent enzymes
Superfamily:D-aminoacid aminotransferase-like PLP-dependent enzymes
Family:D-aminoacid aminotransferase-like PLP-dependent enzymes
23c3uzbA_
not modelled 100.0 19
PDB header:transferase
Chain: A: PDB Molecule:branched-chain-amino-acid aminotransferase;
PDBTitle: crystal structures of branched-chain aminotransferase from deinococcus2 radiodurans complexes with alpha-ketoisocaproate and l-glutamate3 suggest its radio-resistance for catalysis
24c2abjG_
not modelled 100.0 18
PDB header:transferase
Chain: G: PDB Molecule:branched-chain-amino-acid aminotransferase, cytosolic;
PDBTitle: crystal structure of human branched chain amino acid transaminase in a2 complex with an inhibitor, c16h10n2o4f3scl, and pyridoxal 5'3 phosphate.
25c3lulA_
not modelled 100.0 22
PDB header:lyase
Chain: A: PDB Molecule:4-amino-4-deoxychorismate lyase;
PDBTitle: crystal structure of putative 4-amino-4-deoxychorismate lyase.2 (yp_094631.1) from legionella pneumophila subsp. pneumophila str.3 philadelphia 1 at 1.78 a resolution
26c2zgiA_
not modelled 100.0 22
PDB header:lyase
Chain: A: PDB Molecule:putative 4-amino-4-deoxychorismate lyase;
PDBTitle: crystal structure of putative 4-amino-4-deoxychorismate lyase
27c3snoA_
not modelled 100.0 37
PDB header:transferase
Chain: A: PDB Molecule:hypothetical aminotransferase;
PDBTitle: crystal structure of a putative aminotransferase (ncgl2491) from2 corynebacterium glutamicum atcc 13032 at 1.60 a resolution
28c3qqmD_
not modelled 100.0 18
PDB header:transferase
Chain: D: PDB Molecule:mlr3007 protein;
PDBTitle: crystal structure of a putative amino-acid aminotransferase2 (np_104211.1) from mesorhizobium loti at 2.30 a resolution
29c3cebA_
not modelled 100.0 20
PDB header:lyase
Chain: A: PDB Molecule:d-aminoacid aminotransferase-like plp-dependent enzyme;
PDBTitle: crystal structure of a putative 4-amino-4-deoxychorismate lyase2 (hs_0128) from haemophilus somnus 129pt at 2.40 a resolution
30c4k6nA_
not modelled 100.0 14
PDB header:lyase
Chain: A: PDB Molecule:aminodeoxychorismate lyase;
PDBTitle: crystal structure of yeast 4-amino-4-deoxychorismate lyase
31d1aw9a2
not modelled 49.8 11
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione S-transferase (GST), N-terminal domain
32d1jlva2
not modelled 49.4 13
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione S-transferase (GST), N-terminal domain
33d1ljra2
not modelled 48.4 11
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione S-transferase (GST), N-terminal domain
34c3zijA_
not modelled 47.5 8
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: crystal structure of the thioredoxin-like protein bc3987
35d2r48a1
not modelled 47.1 16
Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:PTS system IIB component-like
Family:PTS system, Fructose specific IIB subunit-like
36d2r4qa1
not modelled 45.1 22
Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:PTS system IIB component-like
Family:PTS system, Fructose specific IIB subunit-like
37d1axda2
not modelled 44.6 9
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione S-transferase (GST), N-terminal domain
38c4tr1A_
not modelled 38.2 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutaredoxin 3;
PDBTitle: crystal structure of gsh-bound cgrx2/c15s
39d1k3ya2
not modelled 37.1 16
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione S-transferase (GST), N-terminal domain
40d1pn9a2
not modelled 34.8 13
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione S-transferase (GST), N-terminal domain
41d2fnoa2
not modelled 33.6 11
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione S-transferase (GST), N-terminal domain
42d1v2aa2
not modelled 31.8 13
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione S-transferase (GST), N-terminal domain
43d1gnwa2
not modelled 31.6 8
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione S-transferase (GST), N-terminal domain
44c4ielB_
not modelled 30.7 9
PDB header:transferase
Chain: B: PDB Molecule:glutathione s-transferase, n-terminal domain protein;
PDBTitle: crystal structure of a glutathione s-transferase family protein from2 burkholderia ambifaria, target efi-507141, with bound glutathione
45d1oyja2
not modelled 30.0 18
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione S-transferase (GST), N-terminal domain
46d1r5aa2
not modelled 29.6 14
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione S-transferase (GST), N-terminal domain
47c4jbbA_
not modelled 29.0 12
PDB header:transferase
Chain: A: PDB Molecule:putative glutathione s-transferase;
PDBTitle: crystal structure of glutathione s-transferase a6tby7(target efi-2 507184) from klebsiella pneumoniae mgh 78578, gsh complex
48c4gxzB_
not modelled 28.2 7
PDB header:isomerase
Chain: B: PDB Molecule:suppression of copper sensitivity protein;
PDBTitle: crystal structure of a periplasmic thioredoxin-like protein from2 salmonella enterica serovar typhimurium
49d1e6ba2
not modelled 28.2 8
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione S-transferase (GST), N-terminal domain
50c2klxA_
not modelled 25.4 5
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutaredoxin;
PDBTitle: solution structure of glutaredoxin from bartonella henselae str.2 houston
51c2mvfA_
not modelled 23.9 22
PDB header:ribosomal protein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: structural insight into an essential assembly factor network on the2 pre-ribosome
52d1t1va_
not modelled 23.2 4
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:SH3BGR (SH3-binding, glutamic acid-rich protein-like)
53d1r7ha_
not modelled 23.2 15
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
54d1nm3a1
not modelled 22.1 15
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
55d1ev4a2
not modelled 21.2 13
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione S-transferase (GST), N-terminal domain
56c5xxuE_
not modelled 20.9 9
PDB header:ribosome
Chain: E: PDB Molecule:ribosomal protein es4;
PDBTitle: small subunit of toxoplasma gondii ribosome
57d1pd212
not modelled 20.0 13
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione S-transferase (GST), N-terminal domain
58c6k4eB_
not modelled 19.7 14
PDB header:signaling protein
Chain: B: PDB Molecule:hamp domain-containing protein;
PDBTitle: siaa-pp2c domain of pseudomonas aeruginosa
59d1h75a_
not modelled 19.3 8
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
60c2cb1A_
not modelled 19.2 12
PDB header:lyase
Chain: A: PDB Molecule:o-acetyl homoserine sulfhydrylase;
PDBTitle: crystal structure of o-actetyl homoserine sulfhydrylase2 from thermus thermophilus hb8,oah2.
61d2c4ja2
not modelled 19.0 5
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione S-transferase (GST), N-terminal domain
62c4ri7A_
not modelled 18.7 6
PDB header:transferase
Chain: A: PDB Molecule:phi class glutathione transferase gstf1;
PDBTitle: crystal structure of poplar glutathione transferase f1 mutant ser 132 cys
63d1xw6a2
not modelled 18.4 6
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione S-transferase (GST), N-terminal domain
64d1tw9a2
not modelled 18.3 13
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione S-transferase (GST), N-terminal domain
65c6em5r_
not modelled 17.8 21
PDB header:ribosome
Chain: R: PDB Molecule:60s ribosomal protein l19-a;
PDBTitle: state d architectural model (nsa1-tap flag-ytm1) - visualizing the2 assembly pathway of nucleolar pre-60s ribosomes
66c3ic4A_
not modelled 17.7 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutaredoxin (grx-1);
PDBTitle: the crystal structure of the glutaredoxin(grx-1) from archaeoglobus2 fulgidus
67c5dleD_
not modelled 17.4 18
PDB header:transferase
Chain: D: PDB Molecule:pts system, fructose-specific iiabc component;
PDBTitle: crystal structure from a domain (thr161-f265) from fructose-specific2 iiabc component (pts system) from borrelia burgdorferi
68c3ipzA_
not modelled 16.6 9
PDB header:electron transport, oxidoreductase
Chain: A: PDB Molecule:monothiol glutaredoxin-s14, chloroplastic;
PDBTitle: crystal structure of arabidopsis monothiol glutaredoxin atgrxcp
69d1fova_
not modelled 16.4 8
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
70d2gsta2
not modelled 16.2 8
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione S-transferase (GST), N-terminal domain
71d1tu7a2
not modelled 16.0 2
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione S-transferase (GST), N-terminal domain
72c3qmxA_
not modelled 15.9 6
PDB header:electron transport
Chain: A: PDB Molecule:glutaredoxin a;
PDBTitle: x-ray crystal structure of synechocystis sp. pcc 6803 glutaredoxin a
73c6f01B_
not modelled 15.9 8
PDB header:transferase
Chain: B: PDB Molecule:glutathione s-transferase f9;
PDBTitle: arabidopsis thaliana gstf9, gso3 and gsoh bound
74c1jlvA_
not modelled 15.6 14
PDB header:transferase
Chain: A: PDB Molecule:glutathione transferase gst1-3;
PDBTitle: anopheles dirus species b glutathione s-transferases 1-3
75d1fhea2
not modelled 15.0 11
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione S-transferase (GST), N-terminal domain
76c1ua5A_
not modelled 14.9 4
PDB header:transferase
Chain: A: PDB Molecule:glutathione s-transferase;
PDBTitle: non-fusion gst from s. japonicum in complex with glutathione
77d2gk3a1
not modelled 14.7 32
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:STM3548-like
78c2kd2A_
not modelled 14.6 18
PDB header:apoptosis
Chain: A: PDB Molecule:fas apoptotic inhibitory molecule 1;
PDBTitle: nmr structure of faim-ctd
79c2m1zA_
not modelled 14.2 21
PDB header:transferase
Chain: A: PDB Molecule:lmo0427 protein;
PDBTitle: solution structure of uncharacterized protein lmo0427
80d2hqya2
not modelled 13.6 14
Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:FemXAB nonribosomal peptidyltransferases
81d1jlwa2
not modelled 13.6 11
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione S-transferase (GST), N-terminal domain
82d1ml6a2
not modelled 13.5 11
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione S-transferase (GST), N-terminal domain
83c4jxdA_
not modelled 13.4 12
PDB header:transferase
Chain: A: PDB Molecule:fructose-like phosphotransferase enzyme iib component 3;
PDBTitle: crystal structure of predicted fructose specific iib from escherichia2 coli
84d1k0dd2
not modelled 13.3 9
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione S-transferase (GST), N-terminal domain
85d2nv0a1
not modelled 13.2 21
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
86c2jl4A_
not modelled 12.9 12
PDB header:isomerase
Chain: A: PDB Molecule:maleylpyruvate isomerase;
PDBTitle: holo structure of maleyl pyruvate isomerase, a bacterial2 glutathione-s-transferase in zeta class
87c4pqiA_
not modelled 12.8 8
PDB header:transferase
Chain: A: PDB Molecule:in2-1 family protein, glutathione transferase lambda3;
PDBTitle: crystal structure of glutathione transferase lambda3 from populus2 trichocarpa
88c3h1nA_
not modelled 12.7 14
PDB header:transferase
Chain: A: PDB Molecule:probable glutathione s-transferase;
PDBTitle: crystal structure of probable glutathione s-transferase from2 bordetella bronchiseptica rb50
89c3zf7g_
not modelled 12.4 7
PDB header:ribosome
Chain: G: PDB Molecule:
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
90d1b48a2
not modelled 12.2 13
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione S-transferase (GST), N-terminal domain
91d2fhea2
not modelled 12.1 9
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione S-transferase (GST), N-terminal domain
92d2gsqa2
not modelled 12.1 18
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione S-transferase (GST), N-terminal domain
93d2cvda2
not modelled 12.1 11
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione S-transferase (GST), N-terminal domain
94c6cfzJ_
not modelled 12.0 31
PDB header:nuclear protein
Chain: J: PDB Molecule:spc34;
PDBTitle: structure of the dash/dam1 complex shows its role at the yeast2 kinetochore-microtubule interface
95d1duga2
not modelled 11.9 5
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione S-transferase (GST), N-terminal domain
96c2agaA_
not modelled 11.2 8
PDB header:transcription
Chain: A: PDB Molecule:machado-joseph disease protein 1;
PDBTitle: de-ubiquitinating function of ataxin-3: insights from the2 solution structure of the josephin domain
97c6hq9A_
not modelled 11.2 15
PDB header:hydrolase
Chain: A: PDB Molecule:dna excision repair protein ercc-6-like 2;
PDBTitle: crystal structure of the tudor domain of human ercc6-l2
98c4h5fB_
not modelled 11.1 13
PDB header:transport protein
Chain: B: PDB Molecule:amino acid abc superfamily atp binding cassette
PDBTitle: crystal structure of an amino acid abc transporter substrate-binding2 protein from streptococcus pneumoniae canada mdr_19a bound to l-3 arginine, form 1
99c5g5aC_
not modelled 11.1 14
PDB header:transferase
Chain: C: PDB Molecule:glutathione s-transferase u25;
PDBTitle: glutathione transferase u25 from arabidopsis thaliana in complex with2 glutathione disulfide

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below