Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0813c_(-)_907341_908021
DateFri Jul 26 01:50:40 BST 2019
Unique Job ID76108984b43f692a
SequenceVSSGAGSDAT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:55.589 Y:47.537 Z:48.840
Model (left) based on template c2fwvA_
Top template information
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein mtubf_01000852;
PDBTitle: crystal structure of rv0813
Confidence and coverage
Confidence:100.0% Coverage: 84%
190 residues ( 84% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2fwvA_



100.0 99
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein mtubf_01000852;
PDBTitle: crystal structure of rv0813
2c3ia8A_



100.0 22
PDB header:metal binding protein
Chain: A: PDB Molecule:thap domain-containing protein 4;
PDBTitle: the structure of the c-terminal heme nitrobindin domain of thap2 domain-containing protein 4 from homo sapiens
3d2a13a1



100.0 32
Fold:Lipocalins
Superfamily:Lipocalins
Family:Rv2717c-like
4d2fr2a1



100.0 32
Fold:Lipocalins
Superfamily:Lipocalins
Family:Rv2717c-like
5d1v8ha1



45.3 11
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:SoxZ-like
6c3zueB_



40.7 16
PDB header:virus
Chain: B: PDB Molecule:capsid structural protein vp60;
PDBTitle: rabbit hemorrhagic disease virus (rhdv)capsid protein
7d1jvaa2



36.9 26
Fold:Homing endonuclease-like
Superfamily:Homing endonucleases
Family:Intein endonuclease
8d2h9fa2



34.9 12
Fold:Diaminopimelate epimerase-like
Superfamily:Diaminopimelate epimerase-like
Family:PA0793-like
9c2kq8A_



32.8 29
PDB header:hydrolase
Chain: A: PDB Molecule:cell wall hydrolase;
PDBTitle: solution nmr structure of a domain from bt9727_4915 from2 bacillus thuringiensis, northeast structural genomics3 consortium target bur95a
10c6otfA_



31.4 33
PDB header:virus like particle
Chain: A: PDB Molecule:viral protein 1;
PDBTitle: symmetric reconstruction of human norovirus gii.2 snow mountain virus2 strain vlp in t=3 symmetry
11c1ihmC_



27.4 38
PDB header:virus
Chain: C: PDB Molecule:capsid protein;
PDBTitle: crystal structure analysis of norwalk virus capsid
12d1ihma_



27.4 38
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Caliciviridae-like VP
13c6ouuB_



26.5 29
PDB header:virus like particle
Chain: B: PDB Molecule:major capsid protein;
PDBTitle: symmetric reconstruction of human norovirus gii.4 minerva strain vlp2 in t=4 symmetry
14c5z4gA_



25.7 33
PDB header:unknown function
Chain: A: PDB Molecule:sahs4;
PDBTitle: crystal structure of secretory abundant heat soluble protein 4 from2 ramazzottius varieornatus
15c6crjC_



23.1 38
PDB header:virus
Chain: C: PDB Molecule:norwalk virus, mnv-1 capsid protein chimera;
PDBTitle: mouse norovirus model using the crystal structure of mnv p domain and2 the norwalkvirus shell domain
16c6ou9A_



22.7 33
PDB header:virus like particle
Chain: A: PDB Molecule:major capsid protein;
PDBTitle: asymmetric focused reconstruction of human norovirus gi.7 houston2 strain vlp asymmetric unit in t=3 symmetry
17c2pw0A_



21.7 14
PDB header:unknown function
Chain: A: PDB Molecule:prpf methylaconitate isomerase;
PDBTitle: crystal structure of trans-aconitate bound to methylaconitate2 isomerase prpf from shewanella oneidensis
18d2o62a1



20.8 27
Fold:Lipocalins
Superfamily:Lipocalins
Family:All1756-like
19c4mveB_



16.2 29
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of tcur_1030 protein from thermomonospora curvata
20c5yznA_



15.9 17
PDB header:hydrolase
Chain: A: PDB Molecule:acyl-peptide hydrolase, putative;
PDBTitle: crystal structure of s9 peptidase (active form) from deinococcus2 radiodurans r1
21d1qcsa2



not modelled 15.2 13
Fold:Cdc48 domain 2-like
Superfamily:Cdc48 domain 2-like
Family:Cdc48 domain 2-like
22c3qefB_



not modelled 15.0 13
PDB header:hydrolase
Chain: B: PDB Molecule:beta-xylosidase/alpha-l-arabinfuranosidase, gly43n;
PDBTitle: the structure and function of an arabinan-specific alpha-1,2-2 arabinofuranosidase identified from screening the activities of3 bacterial gh43 glycoside hydrolases
23c3i6pF_



not modelled 14.4 21
PDB header:structural protein
Chain: F: PDB Molecule:ethanolamine utilization protein eutm;
PDBTitle: ethanolamine utilization microcompartment shell subunit, eutm
24c3ngkA_



not modelled 14.3 21
PDB header:unknown function
Chain: A: PDB Molecule:propanediol utilization protein pdua;
PDBTitle: pdua from salmonella enterica typhimurium
25c3fqmA_



not modelled 14.2 60
PDB header:metal binding protein
Chain: A: PDB Molecule:non-structural protein 5a;
PDBTitle: crystal structure of a novel dimeric form of hcv ns5a domain i protein
26c5l38A_



not modelled 14.1 23
PDB header:structural protein
Chain: A: PDB Molecule:msm0272 - rmm microcompartment shell protein;
PDBTitle: the structure of the hexagonal shell protein msm0272 from the rmm2 microcompartment
27c3m8lA_



not modelled 13.9 33
PDB header:virus
Chain: A: PDB Molecule:capsid protein;
PDBTitle: crystal structure analysis of the feline calicivirus capsid protein
28d1szia_



not modelled 13.5 43
Fold:Four-helical up-and-down bundle
Superfamily:Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain
Family:Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain
29c5y9vA_



not modelled 12.6 27
PDB header:transport protein
Chain: A: PDB Molecule:ryanodine receptor 1;
PDBTitle: crystal sturcture of diamondback moth ryanodine receptor n-terminal2 domain
30c4jqpA_



not modelled 12.6 29
PDB header:oxidoreductase
Chain: A: PDB Molecule:4-hydroxythreonine-4-phosphate dehydrogenase;
PDBTitle: x-ray crystal structure of a 4-hydroxythreonine-4-phosphate2 dehydrogenase from burkholderia phymatum
31d1oq1a_



not modelled 12.6 30
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Hypothetical protein YesU
32c4hboD_



not modelled 12.0 50
PDB header:viral protein
Chain: D: PDB Molecule:capsid protein;
PDBTitle: crystal structure of rubella virus capsid protein (residues 127-277)
33c4dguB_



not modelled 11.8 31
PDB header:cell adhesion
Chain: B: PDB Molecule:putative cell adhesion protein;
PDBTitle: crystal structure of a putative cell adhesion protein (bt0320) from2 bacteroides thetaiotaomicron vpi-5482 at 2.37 a resolution
34c5vztB_



not modelled 11.2 21
PDB header:cell cycle
Chain: B: PDB Molecule:f-box only protein 31;
PDBTitle: crystal structure of the skp1-fbxo31 complex
35d1xqoa_



not modelled 11.2 18
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:AgoG-like
36c3cegA_



not modelled 10.6 28
PDB header:ligase
Chain: A: PDB Molecule:baculoviral iap repeat-containing protein 6;
PDBTitle: crystal structure of the ubc domain of baculoviral iap repeat-2 containing protein 6
37d1meoa_



not modelled 10.1 19
Fold:Formyltransferase
Superfamily:Formyltransferase
Family:Formyltransferase
38d1x3ha2



not modelled 10.1 25
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
39c3akgA_



not modelled 9.5 24
PDB header:hydrolase
Chain: A: PDB Molecule:putative secreted alpha l-arabinofuranosidase ii;
PDBTitle: crystal structure of exo-1,5-alpha-l-arabinofuranosidase complexed2 with alpha-1,5-l-arabinofuranobiose
40c1qdnA_



not modelled 9.4 29
PDB header:fusion protein
Chain: A: PDB Molecule:protein (n-ethylmaleimide sensitive fusion
PDBTitle: amino terminal domain of the n-ethylmaleimide sensitive2 fusion protein (nsf)
41d1mv8a3



not modelled 9.4 24
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
Family:UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
42c4zltA_



not modelled 9.0 29
PDB header:chemokine binding protein/chemokine
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of viral chemokine binding protein r17 in complex2 with ccl3
43c2ivzD_



not modelled 8.9 15
PDB header:protein transport/hydrolase
Chain: D: PDB Molecule:protein tolb;
PDBTitle: structure of tolb in complex with a peptide of the colicin2 e9 t-domain
44c2hi1A_



not modelled 8.9 26
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:4-hydroxythreonine-4-phosphate dehydrogenase 2;
PDBTitle: the structure of a putative 4-hydroxythreonine-4-phosphate2 dehydrogenase from salmonella typhimurium.
45c6iczX_



not modelled 8.5 71
PDB header:splicing
Chain: X: PDB Molecule:prkr-interacting protein 1;
PDBTitle: cryo-em structure of a human post-catalytic spliceosome (p complex) at2 3.0 angstrom
46d1ej7l1



not modelled 8.3 20
Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
47d1mkfa_



not modelled 7.9 16
Fold:Viral chemokine binding protein m3
Superfamily:Viral chemokine binding protein m3
Family:Viral chemokine binding protein m3
48d1cr5a2



not modelled 7.6 9
Fold:Cdc48 domain 2-like
Superfamily:Cdc48 domain 2-like
Family:Cdc48 domain 2-like
49c5djbD_



not modelled 7.6 28
PDB header:structural protein
Chain: D: PDB Molecule:microcompartments protein;
PDBTitle: structure of the haliangium ochraceum bmc-h shell protein
50c4qivA_



not modelled 7.5 28
PDB header:structural protein
Chain: A: PDB Molecule:bacterial microcompartments family protein;
PDBTitle: crystal structure of hexameric microcomparment shell protein from2 aeromonas hydrophila
51d2cu8a2



not modelled 7.5 43
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
52c4i0xA_



not modelled 7.4 71
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:esat-6-like protein mab_3112;
PDBTitle: crystal structure of the mycobacterum abscessus esxef (mab_3112-2 mab_3113) complex
53c3qr5B_



not modelled 7.4 29
PDB header:signaling protein
Chain: B: PDB Molecule:cardiac ca2+ release channel;
PDBTitle: structure of the first domain of a cardiac ryanodine receptor mutant2 with exon 3 deleted
54c2kybA_



not modelled 7.3 21
PDB header:toxin
Chain: A: PDB Molecule:mannosyl-glycoprotein endo-beta-n-acetylglucosamidase
PDBTitle: solution structure of cpr82g from clostridium perfringens. north east2 structural genomics consortium target cpr82g
55c3r2cJ_



not modelled 7.0 28
PDB header:transcription/rna
Chain: J: PDB Molecule:30s ribosomal protein s10;
PDBTitle: crystal structure of antitermination factors nusb and nuse in complex2 with boxa rna
56c4m8rA_



not modelled 7.0 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a duf4784 family protein (baccac_01631) from2 bacteroides caccae atcc 43185 at 2.50 a resolution
57c3akjB_



not modelled 6.9 24
PDB header:transferase
Chain: B: PDB Molecule:ctka;
PDBTitle: crystal structure of a helicobacter pylori proinflammatory kinase ctka
58c3w6sA_



not modelled 6.8 44
PDB header:transferase
Chain: A: PDB Molecule:mpr1 protein;
PDBTitle: yeast n-acetyltransferase mpr1 involved in oxidative stress tolerance2 via proline metabolism
59d1svda1



not modelled 6.8 22
Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
60c5t86A_



not modelled 6.4 17
PDB header:toxin
Chain: A: PDB Molecule:cdia toxin;
PDBTitle: crystal structure of cdi complex from e. coli a0 34/86
61c3e7dC_



not modelled 6.4 12
PDB header:isomerase
Chain: C: PDB Molecule:cobh, precorrin-8x methylmutase;
PDBTitle: crystal structure of precorrin-8x methyl mutase cbic/cobh from2 brucella melitensis
62d1lr0a_



not modelled 6.3 33
Fold:TolA/TonB C-terminal domain
Superfamily:TolA/TonB C-terminal domain
Family:TolA
63c4atyA_



not modelled 6.3 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:terephthalate 1,2-cis-dihydrodiol dehydrogenase;
PDBTitle: crystal structure of a terephthalate 1,2-cis-2 dihydrodioldehydrogenase from burkholderia xenovorans3 lb400
64c3a1zC_



not modelled 6.3 21
PDB header:transport protein
Chain: C: PDB Molecule:hemolymph juvenile hormone binding protein;
PDBTitle: crystal structure of juvenile hormone binding protein from silkworm
65c2gh8B_



not modelled 6.3 20
PDB header:virus
Chain: B: PDB Molecule:capsid protein;
PDBTitle: x-ray structure of a native calicivirus
66c3tijA_



not modelled 5.9 40
PDB header:membrane protein
Chain: A: PDB Molecule:nupc family protein;
PDBTitle: crystal structure of a concentrative nucleoside transporter from2 vibrio cholerae
67c3tcqA_



not modelled 5.8 35
PDB header:viral protein
Chain: A: PDB Molecule:matrix protein vp40;
PDBTitle: crystal structure of matrix protein vp40 from ebola virus sudan
68c2mewA_



not modelled 5.8 36
PDB header:structural protein
Chain: A: PDB Molecule:30s ribosomal protein s10;
PDBTitle: solution structure of nuse (s10) from thermotoga maritima
69d1u35c1



not modelled 5.8 33
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
70d1f2va_



not modelled 5.8 29
Fold:Flavodoxin-like
Superfamily:Precorrin-8X methylmutase CbiC/CobH
Family:Precorrin-8X methylmutase CbiC/CobH
71c1bctA_



not modelled 5.8 22
PDB header:photoreceptor
Chain: A: PDB Molecule:bacteriorhodopsin;
PDBTitle: three-dimensional structure of proteolytic fragment 163-2312 of bacterioopsin determined from nuclear magnetic3 resonance data in solution
72c5l2bC_



not modelled 5.7 30
PDB header:transport protein
Chain: C: PDB Molecule:nucleoside permease;
PDBTitle: structure of cntnw n149s, e332a in an outward-facing state
73c4wbxC_



not modelled 5.6 36
PDB header:oxidoreductase
Chain: C: PDB Molecule:2-keto acid:ferredoxin oxidoreductase subunit alpha;
PDBTitle: conserved hypothetical protein pf1771 from pyrococcus furiosus solved2 by sulfur sad using swiss light source data
74d1ou0a_



not modelled 5.4 24
Fold:Flavodoxin-like
Superfamily:Precorrin-8X methylmutase CbiC/CobH
Family:Precorrin-8X methylmutase CbiC/CobH
75d1imla2



not modelled 5.4 43
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
76c2c55A_



not modelled 5.3 33
PDB header:viral protein
Chain: A: PDB Molecule:protein p6;
PDBTitle: solution structure of the human immunodeficiency virus type2 1 p6 protein
77d1v9ca_



not modelled 5.2 12
Fold:Flavodoxin-like
Superfamily:Precorrin-8X methylmutase CbiC/CobH
Family:Precorrin-8X methylmutase CbiC/CobH
78d1ewka_



not modelled 5.2 16
Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
79c2jraB_



not modelled 5.2 25
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:protein rpa2121;
PDBTitle: a novel domain-swapped solution nmr structure of protein rpa2121 from2 rhodopseudomonas palustris. northeast structural genomics target rpt6
80d1jfma_



not modelled 5.2 10
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
81d2q07a3



not modelled 5.2 33
Fold:Cystatin-like
Superfamily:Pre-PUA domain
Family:AF0587 pre C-terminal domain-like
82c1tolA_



not modelled 5.1 31
PDB header:viral protein
Chain: A: PDB Molecule:protein (fusion protein consisting of minor coat protein,
PDBTitle: fusion of n-terminal domain of the minor coat protein from gene iii in2 phage m13, and c-terminal domain of e. coli protein-tola
83c1b24A_



not modelled 5.1 20
PDB header:intron-encoded
Chain: A: PDB Molecule:protein (i-dmoi);
PDBTitle: i-dmoi, intron-encoded endonuclease
84c2kksA_



not modelled 5.1 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of protein dsy2949 from desulfitobacterium2 hafniense. northeast structural genomics consortium target dhr27
85c6qhgB_



not modelled 5.1 83
PDB header:viral protein
Chain: B: PDB Molecule:polymerase;
PDBTitle: structure of the cap-binding domain of rift valley fever virus l2 protein

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