Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0821c_(phoY2)_913561_914202
DateFri Jul 26 01:50:40 BST 2019
Unique Job ID5b4b6b754e578696
SequenceMRTAYHEQLS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:50.535 Y:69.064 Z:27.154
Model (left) based on template d1sumb_
Top template information
Fold:Spectrin repeat-like
Superfamily:PhoU-like
Family:PhoU-like
Confidence and coverage
Confidence:100.0% Coverage: 98%
209 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1sumb_



100.0 18
Fold:Spectrin repeat-like
Superfamily:PhoU-like
Family:PhoU-like
2d1t72a_



100.0 28
Fold:Spectrin repeat-like
Superfamily:PhoU-like
Family:PhoU-like
3c4q25B_



100.0 24
PDB header:unknown function
Chain: B: PDB Molecule:phosphate-specific transport system accessory protein phou
PDBTitle: crystal structure of phou from pseudomonas aeruginosa
4d1xwma_



100.0 30
Fold:Spectrin repeat-like
Superfamily:PhoU-like
Family:PhoU-like
5c2i0mA_



100.0 23
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:phosphate transport system protein phou;
PDBTitle: crystal structure of the phosphate transport system regulatory protein2 phou from streptococcus pneumoniae
6c3l39A_



99.8 9
PDB header:phosphate-binding protein
Chain: A: PDB Molecule:putative phou-like phosphate regulatory protein;
PDBTitle: crystal structure of putative phou-like phosphate regulatory protein2 (bt4638) from bacteroides thetaiotaomicron vpi-5482 at 1.93 a3 resolution
7c2oltB_



99.8 17
PDB header:unknown function
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a phou-like protein (so_3770) from shewanella2 oneidensis mr-1 at 2.00 a resolution
8d1vcta1



99.6 22
Fold:Spectrin repeat-like
Superfamily:PhoU-like
Family:PhoU-like
9c2bknA_



99.3 22
PDB header:membrane protein
Chain: A: PDB Molecule:hypothetical protein ph0236;
PDBTitle: structure analysis of unknown function protein
10c5vwvB_



34.5 25
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: bak core latch dimer in complex with bim-bh3 - cubic
11c5vwwC_



33.9 25
PDB header:apoptosis
Chain: C: PDB Molecule:bcl-2-like protein 11;
PDBTitle: bak core latch dimer in complex with bim-rt - tetragonal
12c3izcw_



32.8 11
PDB header:ribosome
Chain: W: PDB Molecule:60s ribosomal protein rpl22 (l22e);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
13c5vwwD_



31.1 25
PDB header:apoptosis
Chain: D: PDB Molecule:bcl-2-like protein 11;
PDBTitle: bak core latch dimer in complex with bim-rt - tetragonal
14c2qrxA_



27.9 15
PDB header:dna binding protein
Chain: A: PDB Molecule:gm27569p;
PDBTitle: crystal structure of drosophila melanogaster translin protein
15c1pq1B_



25.2 25
PDB header:apoptosis
Chain: B: PDB Molecule:bcl2-like protein 11;
PDBTitle: crystal structure of bcl-xl/bim
16d1seta1



23.9 17
Fold:Long alpha-hairpin
Superfamily:tRNA-binding arm
Family:Seryl-tRNA synthetase (SerRS)
17c5z1nA_



22.2 11
PDB header:protein binding
Chain: A: PDB Molecule:g-protein interacting protein 1;
PDBTitle: crystal structure of c terminal region of g-protein interacting2 protein 1 (gip1) from dictyostelium discoideum
18c1nfoA_



21.1 10
PDB header:lipid transport
Chain: A: PDB Molecule:apolipoprotein e2;
PDBTitle: apolipoprotein e2 (apoe2, d154a mutation)
19c5ua4B_



21.0 20
PDB header:apoptosis
Chain: B: PDB Molecule:bh3-interacting domain death agonist;
PDBTitle: crystal structure of a179l:bid bh3 complex
20c3e6sD_



18.6 10
PDB header:oxidoreductase
Chain: D: PDB Molecule:ferritin;
PDBTitle: crystal structure of ferritin soaked with iron from pseudo-nitzschia2 multiseries
21c2k7wB_



not modelled 16.7 20
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: bax activation is initiated at a novel interaction site
22c4qvfB_



not modelled 15.9 25
PDB header:apoptosis
Chain: B: PDB Molecule:peptide from bcl-2-like protein 11;
PDBTitle: crystal structure of bcl-xl in complex with bim bh3 domain
23c5wosB_



not modelled 15.9 25
PDB header:viral protein
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: structural and functional insights into canarypox virus cnp0582 regulation of apoptosis
24c4d2mB_



not modelled 15.4 25
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: vaccinia virus f1l bound to bim bh3
25c4zieC_



not modelled 15.4 25
PDB header:apoptosis
Chain: C: PDB Molecule:bcl-2-like protein 11;
PDBTitle: crystal structure of core/latch dimer of bax in complex with bimbh3
26c4d2mD_



not modelled 15.3 25
PDB header:apoptosis
Chain: D: PDB Molecule:bcl-2-like protein 11;
PDBTitle: vaccinia virus f1l bound to bim bh3
27c2v6qB_



not modelled 15.3 25
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: crystal structure of a bhrf-1 : bim bh3 complex
28c2pqkB_



not modelled 15.1 25
PDB header:apoptosis
Chain: B: PDB Molecule:bim bh3 peptide;
PDBTitle: x-ray crystal structure of human mcl-1 in complex with bim bh3
29c2wh6B_



not modelled 15.1 25
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: crystal structure of anti-apoptotic bhrf1 in complex with the bim bh32 domain
30c6qfiB_



not modelled 14.9 25
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: structure of human mcl-1 in complex with bim bh3 peptide
31c2nl9B_



not modelled 14.9 25
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: crystal structure of the mcl-1:bim bh3 complex
32c3fdlB_



not modelled 14.7 25
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: bim bh3 peptide in complex with bcl-xl
33c3kj2B_



not modelled 14.5 25
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: mcl-1 in complex with bim bh3 mutant f4ae
34d2o02a1



not modelled 14.4 15
Fold:alpha-alpha superhelix
Superfamily:14-3-3 protein
Family:14-3-3 protein
35c2uv1B_



not modelled 14.3 18
PDB header:inhibitor
Chain: B: PDB Molecule:host-nuclease inhibitor protein gam;
PDBTitle: hexagonal crystal form of gams from bacteriophage lambda.
36c3fmtF_



not modelled 12.7 7
PDB header:replication inhibitor/dna
Chain: F: PDB Molecule:protein seqa;
PDBTitle: crystal structure of seqa bound to dna
37c6qeqD_



not modelled 11.3 16
PDB header:dna binding protein
Chain: D: PDB Molecule:pcff;
PDBTitle: pcff from enterococcus faecalis pcf10
38c3kz0D_



not modelled 10.8 33
PDB header:apoptosis
Chain: D: PDB Molecule:mcl-1 specific peptide mb7;
PDBTitle: mcl-1 complex with mcl-1-specific selected peptide
39c3kz0C_



not modelled 10.8 33
PDB header:apoptosis
Chain: C: PDB Molecule:mcl-1 specific peptide mb7;
PDBTitle: mcl-1 complex with mcl-1-specific selected peptide
40c3iz5w_



not modelled 10.5 20
PDB header:ribosome
Chain: W: PDB Molecule:60s ribosomal protein l22 (l22e);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
41c5vmoB_



not modelled 9.8 12
PDB header:viral protein/apoptosis
Chain: B: PDB Molecule:bcl-2 interacting mediator of cell death;
PDBTitle: crystal structure of grouper iridovirus giv66:bim complex
42c3io8D_



not modelled 8.9 20
PDB header:apoptosis
Chain: D: PDB Molecule:bcl-2-like protein 11;
PDBTitle: biml12f in complex with bcl-xl
43c5toiB_



not modelled 8.7 9
PDB header:viral protein
Chain: B: PDB Molecule:polymerase cofactor vp35;
PDBTitle: crystal structure of the marburg virus vp35 oligomerization domain2 p4222
44c1oxzA_



not modelled 8.2 11
PDB header:membrane protein
Chain: A: PDB Molecule:adp-ribosylation factor binding protein gga1;
PDBTitle: crystal structure of the human gga1 gat domain
45d1oxza_



not modelled 8.2 11
Fold:Spectrin repeat-like
Superfamily:GAT-like domain
Family:GAT domain
46c3io8B_



not modelled 8.2 25
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: biml12f in complex with bcl-xl
47c3ci9B_



not modelled 8.0 16
PDB header:transcription
Chain: B: PDB Molecule:heat shock factor-binding protein 1;
PDBTitle: crystal structure of the human hsbp1
48c4v1ai_



not modelled 7.6 11
PDB header:ribosome
Chain: I: PDB Molecule:
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 22 of 2
49c3d7vB_



not modelled 7.5 27
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: crystal structure of mcl-1 in complex with an mcl-1 selective bh32 ligand
50c5jreC_



not modelled 7.1 12
PDB header:dna binding protein
Chain: C: PDB Molecule:neq131;
PDBTitle: crystal structure of nec3po in complex with ssdna.
51c3hr0A_



not modelled 6.9 15
PDB header:transport protein
Chain: A: PDB Molecule:cog4;
PDBTitle: crystal structure of homo sapiens conserved oligomeric golgi subunit 4
52c3he4A_



not modelled 6.8 18
PDB header:de novo protein
Chain: A: PDB Molecule:synzip6;
PDBTitle: heterospecific coiled-coil pair synzip5:synzip6
53c3kj0B_



not modelled 6.8 22
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: mcl-1 in complex with bim bh3 mutant i2dy
54d2za7a1



not modelled 6.7 7
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
55d2coha1



not modelled 6.6 9
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
56c5fz5M_



not modelled 6.3 10
PDB header:transcription
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: transcription initiation complex structures elucidate dna opening (cc)
57c6h9xA_



not modelled 6.3 22
PDB header:ligase
Chain: A: PDB Molecule:serine--trna ligase;
PDBTitle: klebsiella pneumoniae seryl-trna synthetase in complex with the2 intermediate analog 5'-o-(n-(l-seryl)-sulfamoyl)adenosine
58c1wvtA_



not modelled 6.3 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein st2180;
PDBTitle: crystal structure of uncharacterized protein st2180 from sulfolobus2 tokodaii
59c4h63K_



not modelled 6.3 22
PDB header:transcription
Chain: K: PDB Molecule:mediator of rna polymerase ii transcription subunit 11;
PDBTitle: structure of the schizosaccharomyces pombe mediator head module
60d1nf4a_



not modelled 6.1 9
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
61c3io9B_



not modelled 6.0 25
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: biml12y in complex with mcl-1
62c2gzdC_



not modelled 6.0 20
PDB header:protein transport
Chain: C: PDB Molecule:rab11 family-interacting protein 2;
PDBTitle: crystal structure of rab11 in complex with rab11-fip2
63d1o3xa_



not modelled 6.0 10
Fold:Spectrin repeat-like
Superfamily:GAT-like domain
Family:GAT domain
64c3kj1B_



not modelled 6.0 25
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: mcl-1 in complex with bim bh3 mutant i2da
65d1uptb_



not modelled 5.6 6
Fold:GRIP domain
Superfamily:GRIP domain
Family:GRIP domain
66c5zwnY_



not modelled 5.6 8
PDB header:splicing
Chain: Y: PDB Molecule:protein luc7;
PDBTitle: cryo-em structure of the yeast pre-b complex at an average resolution2 of 3.3 angstrom (part ii: u1 snrnp region)
67c5xauC_



not modelled 5.4 11
PDB header:cell adhesion
Chain: C: PDB Molecule:laminin subunit gamma-1;
PDBTitle: crystal structure of integrin binding fragment of laminin-511
68c6dlmA_



not modelled 5.4 18
PDB header:de novo protein
Chain: A: PDB Molecule:dhd127_a;
PDBTitle: dhd127
69d1jgca_



not modelled 5.2 12
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
70c5l33A_



not modelled 5.2 30
PDB header:de novo protein
Chain: A: PDB Molecule:denovo ntf2;
PDBTitle: crystal structure of a de novo designed protein with curved beta-sheet
71c2w1oA_



not modelled 5.2 20
PDB header:translation
Chain: A: PDB Molecule:60s acidic ribosomal protein p2;
PDBTitle: nmr structure of dimerization domain of human ribosomal2 protein p2
72d1eqzb_



not modelled 5.2 14
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
73d3d19a1



not modelled 5.1 12
Fold:Bromodomain-like
Superfamily:Bacillus cereus metalloprotein-like
Family:Bacillus cereus metalloprotein-like
74c3kyiA_



not modelled 5.1 3
PDB header:transferase
Chain: A: PDB Molecule:putative histidine protein kinase;
PDBTitle: crystal structure of the phosphorylated p1 domain of chea3 in complex2 with chey6 from r. sphaeroides
75c3dzuD_



not modelled 5.1 9
PDB header:transcription/dna
Chain: D: PDB Molecule:peroxisome proliferator-activated receptor gamma;
PDBTitle: intact ppar gamma - rxr alpha nuclear receptor complex on dna bound2 with bvt.13, 9-cis retinoic acid and ncoa2 peptide
76c1sryB_



not modelled 5.0 17
PDB header:ligase(synthetase)
Chain: B: PDB Molecule:seryl-trna synthetase;
PDBTitle: refined crystal structure of the seryl-trna synthetase from2 thermus thermophilus at 2.5 angstroms resolution

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite