Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0822c_(-)_914260_916314
DateFri Jul 26 01:50:41 BST 2019
Unique Job ID2926cdd7e48d350d
SequenceMSDGESAAPW ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:53.155 Y:58.924 Z:52.817
Model (left) based on template c3pe5B_
Top template information
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: three-dimensional structure of protein a7vv38_9clot from clostridium2 leptum dsm 753, northeast structural genomics consortium target3 qlr103
Confidence and coverage
Confidence:100.0% Coverage: 36%
243 residues ( 36% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
403 residues ( 59%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
Warning: 51% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3pe5B_
100.0 27
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: three-dimensional structure of protein a7vv38_9clot from clostridium2 leptum dsm 753, northeast structural genomics consortium target3 qlr103
2c5v8cA_
100.0 25
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: lytr-csp2a-psr enzyme from actinomyces oris
3c3okzB_
100.0 22
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative uncharacterized protein gbs0355;
PDBTitle: crystal structure of protein gbs0355 from streptococcus agalactiae,2 northeast structural genomics consortium target sar127
4c4de8A_
100.0 23
PDB header:membrane protein
Chain: A: PDB Molecule:cps2a;
PDBTitle: lytr-cps2a-psr family protein with bound octaprenyl monophosphate2 lipid
5c3qfiA_
100.0 24
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: x-ray crystal structure of transcriptional regulator (ef0465) from2 enterococcus faecalis, northeast structural genomics consortium3 target efr190
6c3owqB_
100.0 30
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:lin1025 protein;
PDBTitle: x-ray structure of lin1025 protein from listeria innocua, northeast2 structural genomics consortium target lkr164
7c3mejA_
100.0 26
PDB header:transcriptional regulator
Chain: A: PDB Molecule:transcriptional regulator ywtf;
PDBTitle: crystal structure of putative transcriptional regulator ywtf from2 bacillus subtilis, northeast structural genomics consortium target3 sr736
8c3nroA_
100.0 30
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lmo1026 protein;
PDBTitle: crystal structure of putative transcriptional factor lmo1026 from2 listeria monocytogenes (fragment 52-321), northeast structural3 genomics consortium target lmr194
9c4obmA_
100.0 14
PDB header:transcription regulator
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative transcription regulator (eubsir_01389)2 from eubacterium siraeum dsm 15702 at 2.15 a resolution
10c3nxhA_
100.0 22
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator yvhj;
PDBTitle: crystal structure of the transcriptional regulator yvhj from bacillus2 subtilis. northeast structural genomics consortium target sr735.
11c2m5yA_
99.7 22
PDB header:unknown function
Chain: A: PDB Molecule:putative tuberculin related peptide;
PDBTitle: solution structure of the c-terminal domain of rv0431
12c2pjuD_
87.2 15
PDB header:transcription
Chain: D: PDB Molecule:propionate catabolism operon regulatory protein;
PDBTitle: crystal structure of propionate catabolism operon regulatory protein2 prpr
13c3txsC_
67.5 18
PDB header:viral protein
Chain: C: PDB Molecule:terminase dna packaging enzyme small subunit;
PDBTitle: crystal structure of phage 44rr small terminase gp16
14d1y81a1
24.0 13
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
15c1oheA_
22.4 21
PDB header:hydrolase
Chain: A: PDB Molecule:cdc14b2 phosphatase;
PDBTitle: structure of cdc14b phosphatase with a peptide ligand
16c5j5vC_
18.1 29
PDB header:toxin
Chain: C: PDB Molecule:immunity protein cdii;
PDBTitle: cdia-ct from uropathogenic escherichia coli in complex with cognate2 immunity protein and cysk
17c4ddpA_
17.3 18
PDB header:membrane protein
Chain: A: PDB Molecule:beclin-1;
PDBTitle: crystal structure of beclin 1 evolutionarily conserved domain(ecd)
18d1ny8a_
16.7 24
Fold:Alpha-lytic protease prodomain-like
Superfamily:BolA-like
Family:BolA-like
19c6f0kA_
16.5 9
PDB header:membrane protein
Chain: A: PDB Molecule:cytochrome c family protein;
PDBTitle: alternative complex iii
20d1gsoa2
16.2 25
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
21d1xjca_
not modelled 16.1 20
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
22c2ppwA_
not modelled 16.0 11
PDB header:isomerase
Chain: A: PDB Molecule:conserved domain protein;
PDBTitle: the crystal structure of uncharacterized ribose 5-phosphate isomerase2 rpib from streptococcus pneumoniae
23d1vkza2
not modelled 14.3 17
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
24d1ohea2
not modelled 13.4 20
Fold:(Phosphotyrosine protein) phosphatases II
Superfamily:(Phosphotyrosine protein) phosphatases II
Family:Dual specificity phosphatase-like
25c5iiqA_
not modelled 12.7 13
PDB header:transferase
Chain: A: PDB Molecule:vacuolar transporter chaperone 4;
PDBTitle: structure of the spx-ttm domain fragment of the yeast inorganic2 polyphophate polymerase vtc4 (form b).
26c5z5bA_
not modelled 12.7 20
PDB header:hydrolase
Chain: A: PDB Molecule:protein-tyrosine phosphatase;
PDBTitle: crystal structure of tk-ptp in the g95a mutant form
27c3bnuA_
not modelled 11.9 32
PDB header:oxidoreductase
Chain: A: PDB Molecule:polyamine oxidase fms1;
PDBTitle: crystal structure of polyamine oxidase fms1 from2 saccharomyces cerevisiae in complex with bis-(3s,3's)-3 methylated spermine
28c4qn9A_
not modelled 11.7 11
PDB header:hydrolase
Chain: A: PDB Molecule:n-acyl-phosphatidylethanolamine-hydrolyzing phospholipase
PDBTitle: structure of human nape-pld
29c3vp7A_
not modelled 11.4 18
PDB header:protein transport
Chain: A: PDB Molecule:vacuolar protein sorting-associated protein 30;
PDBTitle: crystal structure of the beta-alpha repeated, autophagy-specific2 (bara) domain of vps30/atg6
30d1tf4a2
not modelled 11.3 30
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Carbohydrate-binding domain
Family:Cellulose-binding domain family III
31d2cdqa3
not modelled 11.2 16
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:Aspartokinase allosteric domain-like
32c4b96A_
not modelled 11.1 10
PDB header:sugar binding protein
Chain: A: PDB Molecule:cellulose binding domain-containing protein;
PDBTitle: family 3b carbohydrate-binding module from the biomass2 sensoring system of clostridium clariflavum
33c2duwA_
not modelled 10.8 14
PDB header:ligand binding protein
Chain: A: PDB Molecule:putative coa-binding protein;
PDBTitle: solution structure of putative coa-binding protein of2 klebsiella pneumoniae
34c4ecgA_
not modelled 10.7 10
PDB header:hydrolase
Chain: A: PDB Molecule:putative iron-regulated protein a;
PDBTitle: crystal structure of a putative iron-regulated protein a precursor2 (bdi_2603) from parabacteroides distasonis atcc 8503 at 2.30 a3 resolution
35c4alnE_
not modelled 10.7 13
PDB header:oxidoreductase
Chain: E: PDB Molecule:enoyl-[acyl-carrier-protein] reductase [nadph];
PDBTitle: crystal structure of s. aureus fabi (p32)
36d2d59a1
not modelled 10.0 13
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
37c4puiA_
not modelled 9.8 24
PDB header:protein binding
Chain: A: PDB Molecule:sufe-like protein, chloroplastic;
PDBTitle: bola domain of sufe1 from arabidopsis thaliana
38c3k31B_
not modelled 9.7 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:enoyl-(acyl-carrier-protein) reductase;
PDBTitle: crystal structure of eonyl-(acyl-carrier-protein) reductase from2 anaplasma phagocytophilum in complex with nad at 1.9a resolution
39c4nk4E_
not modelled 9.7 9
PDB header:oxidoreductase
Chain: E: PDB Molecule:enoyl-[acyl-carrier-protein] reductase [nadh];
PDBTitle: crystal structure of fabi from candidatus liberibacter asiaticus
40c4b9cA_
not modelled 9.5 30
PDB header:carbohydrate-binding protein
Chain: A: PDB Molecule:type 3a cellulose-binding domain protein;
PDBTitle: biomass sensoring modules from putative rsgi-like proteins2 of clostridium thermocellum resemble family 3 carbohydrate-3 binding module of cellulosome
41c3ff4A_
not modelled 9.5 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterized protein chu_1412
42d1nbca_
not modelled 9.4 30
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Carbohydrate-binding domain
Family:Cellulose-binding domain family III
43c3o2eA_
not modelled 9.4 29
PDB header:unknown function
Chain: A: PDB Molecule:bola-like protein;
PDBTitle: crystal structure of a bol-like protein from babesia bovis
44c3grkE_
not modelled 9.4 6
PDB header:oxidoreductase
Chain: E: PDB Molecule:enoyl-(acyl-carrier-protein) reductase (nadh);
PDBTitle: crystal structure of short chain dehydrogenase reductase2 sdr glucose-ribitol dehydrogenase from brucella melitensis
45c2fgyA_
not modelled 9.2 39
PDB header:lyase
Chain: A: PDB Molecule:carboxysome shell polypeptide;
PDBTitle: beta carbonic anhydrase from the carboxysomal shell of2 halothiobacillus neapolitanus (csosca)
46c2dhmA_
not modelled 9.2 14
PDB header:protein binding
Chain: A: PDB Molecule:protein bola;
PDBTitle: solution structure of the bola protein from escherichia coli
47c2xfgB_
not modelled 9.1 20
PDB header:hydrolase/sugar binding protein
Chain: B: PDB Molecule:endoglucanase 1;
PDBTitle: reassembly and co-crystallization of a family 9 processive2 endoglucanase from separately expressed gh9 and cbm3c3 modules
48c1u8sB_
not modelled 8.9 13
PDB header:transcription
Chain: B: PDB Molecule:glycine cleavage system transcriptional
PDBTitle: crystal structure of putative glycine cleavage system2 transcriptional repressor
49d2hmfa2
not modelled 8.8 15
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:Aspartokinase allosteric domain-like
50c5ijpA_
not modelled 8.8 13
PDB header:inositol phosphate binding protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of the spx domain of chaetomium thermophilum vtc4 in2 complex with inositol hexakisphosphate (insp6).
51d1t70a_
not modelled 8.8 21
Fold:Metallo-dependent phosphatases
Superfamily:Metallo-dependent phosphatases
Family:DR1281-like
52c5iitC_
not modelled 8.8 13
PDB header:inositol phosphate binding protein
Chain: C: PDB Molecule:vacuolar transporter chaperone 4,core histone macro-h2a.1;
PDBTitle: structure of spx domain of the yeast inorganic polyphophate polymerase2 vtc4 crystallized by carrier-driven crystallization in fusion with3 the macro domain of human histone macroh2a1.1
53c1wv9B_
not modelled 8.7 18
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:rhodanese homolog tt1651;
PDBTitle: crystal structure of rhodanese homolog tt1651 from an2 extremely thermophilic bacterium thermus thermophilus hb8
54c5ijjB_
not modelled 8.7 24
PDB header:inositol polyphosphate binding protein
Chain: B: PDB Molecule:spx domain;
PDBTitle: structure of the spx domain of chaetomium thermophilum2 glycerophosphodiester phosphodiesterase 1 in complex with inositol3 hexakisphosphate (insp6)
55d2z06a1
not modelled 8.7 18
Fold:Metallo-dependent phosphatases
Superfamily:Metallo-dependent phosphatases
Family:TTHA0625-like
56c3i7aA_
not modelled 8.7 18
PDB header:hydrolase
Chain: A: PDB Molecule:putative metal-dependent phosphohydrolase;
PDBTitle: crystal structure of putative metal-dependent phosphohydrolase2 (yp_926882.1) from shewanella amazonensis sb2b at 2.06 a resolution
57c6d5bL_
not modelled 8.4 20
PDB header:sugar binding protein
Chain: L: PDB Molecule:glycoside hydrolase wp_045175321;
PDBTitle: structure of caldicellulosiruptor danielii cbm3 module of glycoside2 hydrolase wp_045175321
58d1iaza_
not modelled 8.4 22
Fold:Cytolysin/lectin
Superfamily:Cytolysin/lectin
Family:Anemone pore-forming cytolysin
59c2nclA_
not modelled 8.4 10
PDB header:protein binding
Chain: A: PDB Molecule:bola-like protein 3;
PDBTitle: solution structure of bola3 from homo sapiens
60c2l8aA_
not modelled 8.4 10
PDB header:hydrolase
Chain: A: PDB Molecule:endoglucanase;
PDBTitle: structure of a novel cbm3 lacking the calcium-binding site
61c4pugA_
not modelled 8.4 19
PDB header:dna binding protein
Chain: A: PDB Molecule:bola like protein;
PDBTitle: bola1 from arabidopsis thaliana
62d1g87a2
not modelled 8.3 20
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Carbohydrate-binding domain
Family:Cellulose-binding domain family III
63c2o8sA_
not modelled 8.3 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:agr_c_984p;
PDBTitle: x-ray crystal structure of protein agr_c_984 from agrobacterium2 tumefaciens. northeast structural genomics consortium target atr120.
64c2jb1B_
not modelled 8.1 35
PDB header:oxidoreductase
Chain: B: PDB Molecule:l-amino acid oxidase;
PDBTitle: the l-amino acid oxidase from rhodococcus opacus in complex2 with l-alanine
65c2xbtA_
not modelled 8.0 30
PDB header:sugar binding protein
Chain: A: PDB Molecule:cellulosomal scaffoldin;
PDBTitle: structure of a scaffoldin carbohydrate-binding module family 3b from2 the cellulosome of bacteroides cellulosolvens: structural diversity3 and implications for carbohydrate binding
66d1vqon1
not modelled 8.0 16
Fold:Ribonuclease H-like motif
Superfamily:Translational machinery components
Family:Ribosomal protein L18 and S11
67c4q9nD_
not modelled 7.9 9
PDB header:oxidoreductase/oxidoreductase inhibitor
Chain: D: PDB Molecule:enoyl-[acyl-carrier-protein] reductase [nadh];
PDBTitle: crystal structure of chlamydia trachomatis enoyl-acp reductase (fabi)2 in complex with nadh and afn-1252
68d1fnna1
not modelled 7.9 14
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Helicase DNA-binding domain
69c2ozeA_
not modelled 7.9 15
PDB header:dna binding protein
Chain: A: PDB Molecule:orf delta';
PDBTitle: the crystal structure of delta protein of psm19035 from2 streptoccocus pyogenes
70c3l76B_
not modelled 7.9 17
PDB header:transferase
Chain: B: PDB Molecule:aspartokinase;
PDBTitle: crystal structure of aspartate kinase from synechocystis
71c2e1mA_
not modelled 7.7 36
PDB header:oxidoreductase
Chain: A: PDB Molecule:l-glutamate oxidase;
PDBTitle: crystal structure of l-glutamate oxidase from streptomyces sp. x-119-6
72c2n5iA_
not modelled 7.6 19
PDB header:transport protein
Chain: A: PDB Molecule:peptidyl carrier protein pltl;
PDBTitle: pltl-pyrrolyl
73d1v86a_
not modelled 7.4 31
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
74c5xw4A_
not modelled 7.3 11
PDB header:cell cycle
Chain: A: PDB Molecule:tyrosine-protein phosphatase cdc14;
PDBTitle: crystal structure of budding yeast cdc14p (wild type) in the apo state
75c5nfmA_
not modelled 7.3 20
PDB header:ligase
Chain: A: PDB Molecule:yrba;
PDBTitle: crystal structure of yrba from sinorhizobium meliloti in complex with2 copper.
76c2qnwA_
not modelled 7.2 19
PDB header:signaling protein
Chain: A: PDB Molecule:acyl carrier protein;
PDBTitle: toxoplasma gondii apicoplast-targeted acyl carrier protein
77d1iuka_
not modelled 7.0 21
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
78c2ylkD_
not modelled 6.9 10
PDB header:hydrolase
Chain: D: PDB Molecule:cellulose 1,4-beta-cellobiosidase;
PDBTitle: carbohydrate-binding module cbm3b from the cellulosomal2 cellobiohydrolase 9a from clostridium thermocellum
79c2yg4B_
not modelled 6.9 26
PDB header:oxidoreductase
Chain: B: PDB Molecule:putrescine oxidase;
PDBTitle: structure-based redesign of cofactor binding in putrescine2 oxidase: wild type bound to putrescine
80c3gdfA_
not modelled 6.9 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:probable nadp-dependent mannitol dehydrogenase;
PDBTitle: crystal structure of the nadp-dependent mannitol dehydrogenase from2 cladosporium herbarum.
81c1b22A_
not modelled 6.8 31
PDB header:dna binding protein
Chain: A: PDB Molecule:dna repair protein rad51;
PDBTitle: rad51 (n-terminal domain)
82d1b22a_
not modelled 6.8 31
Fold:SAM domain-like
Superfamily:Rad51 N-terminal domain-like
Family:DNA repair protein Rad51, N-terminal domain
83d1f80d_
not modelled 6.8 16
Fold:Acyl carrier protein-like
Superfamily:ACP-like
Family:Acyl-carrier protein (ACP)
84d1e6ya2
not modelled 6.7 23
Fold:Ferredoxin-like
Superfamily:Methyl-coenzyme M reductase subunits
Family:Methyl-coenzyme M reductase alpha and beta chain N-terminal domain
85c3ce7A_
not modelled 6.6 10
PDB header:biosynthetic protein
Chain: A: PDB Molecule:specific mitochondrial acyl carrier protein;
PDBTitle: crystal structure of toxoplasma specific mitochondrial acyl carrier2 protein, 59.m03510
86c2mm9A_
not modelled 6.6 15
PDB header:transcription
Chain: A: PDB Molecule:bola2;
PDBTitle: solution structure of reduced bola2 from arabidopsis thaliana
87c2f06B_
not modelled 6.6 10
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:conserved hypothetical protein;
PDBTitle: crystal structure of protein bt0572 from bacteroides thetaiotaomicron
88c4m87B_
not modelled 6.6 6
PDB header:oxidoreductase
Chain: B: PDB Molecule:enoyl-[acyl-carrier-protein] reductase [nadh];
PDBTitle: crystal structure of enoyl-acyl carrier protein reductase (fabi) from2 neisseria meningitidis in complex with nad+
89c1n7sB_
not modelled 6.5 17
PDB header:transport protein
Chain: B: PDB Molecule:syntaxin 1a;
PDBTitle: high resolution structure of a truncated neuronal snare complex
90c3un1D_
not modelled 6.5 12
PDB header:oxidoreductase
Chain: D: PDB Molecule:probable oxidoreductase;
PDBTitle: crystal structure of an oxidoreductase from sinorhizobium meliloti2 1021
91d2voua1
not modelled 6.5 24
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
92c2zuuA_
not modelled 6.5 15
PDB header:transferase
Chain: A: PDB Molecule:lacto-n-biose phosphorylase;
PDBTitle: crystal structure of galacto-n-biose/lacto-n-biose i phosphorylase in2 complex with glcnac
93c4iyrB_
not modelled 6.4 17
PDB header:hydrolase
Chain: B: PDB Molecule:caspase-6;
PDBTitle: crystal structure of full-length caspase-6 zymogen
94c2lfvA_
not modelled 6.4 8
PDB header:cell cycle
Chain: A: PDB Molecule:protein damx;
PDBTitle: solution structure of the spor domain from e. coli damx
95c1v60A_
not modelled 6.4 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:riken cdna 1810037g04;
PDBTitle: solution structure of bola1 protein from mus musculus
96c5ldgA_
not modelled 6.4 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:(-)-isopiperitenone reductase;
PDBTitle: isopiperitenone reductase from mentha piperita in complex with2 isopiperitenone and nadp
97c3gr6A_
not modelled 6.3 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:enoyl-[acyl-carrier-protein] reductase [nadh];
PDBTitle: crystal structure of the staphylococcus aureus enoyl-acyl carrier2 protein reductase (fabi) in complex with nadp and triclosan
98c5y4bA_
not modelled 6.3 5
PDB header:electron transport
Chain: A: PDB Molecule:bola-like protein 2;
PDBTitle: solution structure of yeast fra2
99c4ne4A_
not modelled 6.3 19
PDB header:transport protein
Chain: A: PDB Molecule:abc transporter, substrate binding protein
PDBTitle: crystal structure of abc transporter substrate binding protein prox2 from agrobacterium tumefaciens cocrystalized with btb

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below