Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0824c_(desA1)_917737_918753
DateFri Jul 26 01:50:41 BST 2019
Unique Job ID061ae107bd768d24
SequenceMSAKLTDLQL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:51.343 Y:65.496 Z:61.756
Model (left) based on template d1afra_
Top template information
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
Confidence and coverage
Confidence:100.0% Coverage: 86%
291 residues ( 86% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1afra_



100.0 26
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
2d1za0a1



100.0 32
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
3c1r2fB_



98.5 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:protein (ribonucleotide reductase r2);
PDBTitle: ribonucleotide reductase r2f protein from salmonella2 typhimurium
4d1r2fa_



98.5 13
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
5c4bmtB_



98.5 10
PDB header:oxidoreductase
Chain: B: PDB Molecule:ribonucleoside-diphosphate reductase subunit beta;
PDBTitle: crystal structure of ribonucleotide reductase di-iron nrdf2 from bacillus cereus
6c5hyhA_



98.4 17
PDB header:metal binding protein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: cmli (chemically reduced state), arylamine oxygenase of2 chloramphenicol biosynthetic pathway
7d1uzra_



98.4 12
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
8d1smsa_



98.4 13
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
9c3hf1B_



98.4 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:ribonucleoside-diphosphate reductase subunit m2 b;
PDBTitle: crystal structure of human p53r2
10d1w68a_



98.4 13
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
11c2rccC_



98.4 13
PDB header:oxidoreductase
Chain: C: PDB Molecule:ribonucleoside-diphosphate reductase subunit beta;
PDBTitle: crystal structure of putative class i ribonucleotide reductase2 (np_241368.1) from bacillus halodurans at 1.90 a resolution
12c4hr0A_



98.4 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonuleotide reductase small subunit;
PDBTitle: r2-like ligand-binding oxidase with aerobically reconstituted metal2 cofactor
13c2p1iA_



98.4 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleotide reductase, small chain;
PDBTitle: plasmodium yoelii ribonucleotide reductase subunit r2 (py03671)
14c3chtA_



98.3 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:p-aminobenzoate n-oxygenase;
PDBTitle: crystal structure of di-iron aurf with partially bound ligand
15d1oquc_



98.3 8
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
16c3ee4A_



98.2 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:probable ribonucleoside-diphosphate reductase;
PDBTitle: r2-like ligand binding mn/fe oxidase from m. tuberculosis
17c2o1zA_



98.2 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleotide reductase subunit r2;
PDBTitle: plasmodium vivax ribonucleotide reductase subunit r2 (pv086155)
18c1h0oA_



98.2 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase;
PDBTitle: cobalt substitution of mouse r2 ribonucleotide reductase to2 model the reactive diferrous state
19d1jk0b_



98.2 9
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
20c4n83F_



98.2 13
PDB header:oxidoreductase
Chain: F: PDB Molecule:ribonucleoside-diphosphate reductase subunit beta;
PDBTitle: x-ray crystal structure of streptococcus sanguinis dimanganese(ii)-2 nrdf
21c6qrzA_



not modelled 98.2 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase;
PDBTitle: crystal structure of r2-like ligand-binding oxidase from sulfolobus2 acidocaldarius solved by 3d micro-crystal electron diffraction
22d1jk0a_



not modelled 98.1 14
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
23c2vuxB_



not modelled 98.1 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:ribonucleoside-diphosphate reductase subunit m2 b;
PDBTitle: human ribonucleotide reductase, subunit m2 b
24d3dhza1



not modelled 98.1 10
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
25c6gp2A_



not modelled 98.0 9
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase beta chain;
PDBTitle: ribonucleotide reductase class ie r2 from mesoplasma florum, dopa-2 active form
26d1syya_



not modelled 98.0 10
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
27c1syyA_



not modelled 98.0 10
PDB header:replication,oxidoreductase
Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase beta chain;
PDBTitle: crystal structure of the r2 subunit of ribonucleotide reductase from2 chlamydia trachomatis
28d2oh3a1



not modelled 98.0 11
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:AMB4284-like
29c1smqD_



not modelled 98.0 11
PDB header:oxidoreductase
Chain: D: PDB Molecule:ribonucleoside-diphosphate reductase small chain
PDBTitle: structure of the ribonucleotide reductase rnr2 homodimer2 from saccharomyces cerevisiae
30d1mxra_



not modelled 97.9 16
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
31c4dr0A_



not modelled 97.9 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase subunit beta;
PDBTitle: crystal structure of bacillus subtilis dimanganese(ii) nrdf
32c4r42B_



not modelled 97.8 11
PDB header:oxidoreductase
Chain: B: PDB Molecule:alr3090 protein;
PDBTitle: crystal structure of katb, a manganese catalase from anabaena pcc7120
33d2fzfa1



not modelled 97.8 14
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
34d1vjxa_



not modelled 97.8 11
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
35c6cwqA_



not modelled 97.7 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleotide reductase;
PDBTitle: x-ray crystal structure of flavobacterium johnsoniae dimanganese(ii)2 ribonucleotide reductase beta subunit (as-isolated)
36c1yfdA_



not modelled 97.6 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase 1 beta chain;
PDBTitle: crystal structure of the y122h mutant of ribonucleotide reductase r22 protein from e. coli
37c6d9fA_



not modelled 97.6 18
PDB header:lyase
Chain: A: PDB Molecule:putative vlmb homolog;
PDBTitle: protein 60 with aldehyde deformylating oxidase activity from2 kitasatospora setae
38c5xx9A_



not modelled 97.6 19
PDB header:metal transport
Chain: A: PDB Molecule:bacterioferritin;
PDBTitle: crystal structure of bacterioferritin
39c4a58B_



not modelled 97.5 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:ribonucleoside-diphosphate reductase small chain;
PDBTitle: crystal structure of a monometal state of the2 ribonucleotide-reductase small subunit from epstein-barr virus in3 orthorhombic space group
40c4di0B_



not modelled 97.4 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:rubrerythrin;
PDBTitle: the structure of rubrerythrin from burkholderia pseudomallei
41c3bknB_



not modelled 97.4 19
PDB header:metal binding protein
Chain: B: PDB Molecule:bacterioferritin;
PDBTitle: the structure of mycobacterial bacterioferritin
42c5olkD_



not modelled 97.4 16
PDB header:oxidoreductase
Chain: D: PDB Molecule:ribonucleoside-diphosphate reductase, beta subunit 1;
PDBTitle: crystal structure of the atp-cone-containing nrdb from2 leeuwenhoekiella blandensis
43d2fkza1



not modelled 97.2 16
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
44c5n5eM_



not modelled 97.2 11
PDB header:oxidoreductase
Chain: M: PDB Molecule:pfc_05175;
PDBTitle: crystal structure of encapsulated ferritin domain from pyrococcus2 furiosus pfc_05175
45c5uxgB_



not modelled 97.2 17
PDB header:lyase
Chain: B: PDB Molecule:aldehyde deformylating oxygenase;
PDBTitle: protein 84 with aldehyde deformylating oxygenase activity from2 sulfolobus tokodaii (monoclinic)
46d1jgca_



not modelled 97.2 16
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
47d1lkoa1



not modelled 97.2 11
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
48c4am4B_



not modelled 97.1 16
PDB header:metal binding protein
Chain: B: PDB Molecule:bacterioferritin;
PDBTitle: bacterioferritin from blastochloris viridis
49d1nnqa1



not modelled 96.9 18
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
50c4mudA_



not modelled 96.9 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:ring oxydation complex/ phenylacetic acid degradation
PDBTitle: crystal structure of a ring oxydation complex/ phenylacetic acid2 degradation-like protein (sso1313) from sulfolobus solfataricus p2 at3 2.43 a resolution
51d1j30a_



not modelled 96.9 13
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
52c3qhbA_



not modelled 96.8 12
PDB header:metal transport
Chain: A: PDB Molecule:symerythrin;
PDBTitle: crystal structure of oxidized symerythrin from cyanophora paradoxa
53d2htna1



not modelled 96.8 16
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
54c1dvbA_



not modelled 96.6 14
PDB header:electron transport
Chain: A: PDB Molecule:rubrerythrin;
PDBTitle: rubrerythrin
55d1nf4a_



not modelled 96.6 18
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
56c3r2rA_



not modelled 96.5 18
PDB header:metal binding protein
Chain: A: PDB Molecule:bacterioferritin;
PDBTitle: 1.65a resolution structure of iron soaked ftna from pseudomonas2 aeruginosa (ph 6.0)
57c3dhiA_



not modelled 96.5 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:toluene 4-monooxygenase hydroxylase alpha subunit;
PDBTitle: crystal structure of reduced toluene 4-monoxygenase hydroxylase2 complexed with effector protein
58c3gvyC_



not modelled 96.5 17
PDB header:metal binding protein
Chain: C: PDB Molecule:bacterioferritin;
PDBTitle: crystal structure of bacterioferritin from r.sphaeroides
59d2inca1



not modelled 96.2 13
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
60c3fvbB_



not modelled 96.2 23
PDB header:metal binding protein
Chain: B: PDB Molecule:bacterioferritin;
PDBTitle: crystal structure of ferritin (bacterioferritin) from brucella2 melitensis
61c2vzbA_



not modelled 96.2 15
PDB header:metal transport
Chain: A: PDB Molecule:putative bacterioferritin-related protein;
PDBTitle: a dodecameric thioferritin in the bacterial domain, characterization2 of the bacterioferritin-related protein from bacteroides fragilis
62d1mhyd_



not modelled 96.2 19
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
63d1yv1a1



not modelled 96.1 13
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
64c5da5R_



not modelled 95.9 15
PDB header:oxidoreductase
Chain: R: PDB Molecule:rru_a0973;
PDBTitle: crystal structure of rhodospirillum rubrum rru_a0973
65d1mtyd_



not modelled 95.8 17
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
66c2qqyA_



not modelled 95.6 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:sigma b operon;
PDBTitle: crystal structure of ferritin like, diiron-carboxylate proteins from2 bacillus anthracis str. ames
67c5n5fC_



not modelled 95.5 15
PDB header:oxidoreductase
Chain: C: PDB Molecule:encapsulated ferritin;
PDBTitle: crystal structure of haliangium ochraceum encapsulated ferritin
68d1krqa_



not modelled 95.3 15
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
69c3q4nA_



not modelled 95.3 12
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein mj0754;
PDBTitle: crystal structure of hypothetical protein mj0754 from methanococcus2 jannaschii dsm 2661
70d1jkva_



not modelled 95.2 13
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Manganese catalase (T-catalase)
71d1zpya1



not modelled 95.1 15
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:half-ferritin
72c2ib0A_



not modelled 95.1 10
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical alanine rich protein;
PDBTitle: crystal structure of a conserved hypothetical protein, rv2844, from2 mycobacterium tuberculosis
73d2ib0a1



not modelled 95.1 10
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Rv2844-like
74d1yuza1



not modelled 95.1 16
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
75c5ouwA_



not modelled 94.9 12
PDB header:metal binding protein
Chain: A: PDB Molecule:ferritin;
PDBTitle: metal free structure of synftn
76c2clbP_



not modelled 94.5 10
PDB header:metal binding protein
Chain: P: PDB Molecule:dps-like protein;
PDBTitle: the structure of the dps-like protein from sulfolobus2 solfataricus reveals a bacterioferritin-like di-metal3 binding site within a dps-like dodecameric assembly
77c2hr5B_



not modelled 94.1 18
PDB header:metal binding protein
Chain: B: PDB Molecule:rubrerythrin;
PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form
78d1vlga_



not modelled 93.7 13
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
79c3pw1A_



not modelled 93.7 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:phenylacetic acid degradation protein paaa;
PDBTitle: the phenylacetyl-coa monooxygenase paaac subcomplex with phenylacetyl-2 coa
80c3e6sD_



not modelled 93.2 14
PDB header:oxidoreductase
Chain: D: PDB Molecule:ferritin;
PDBTitle: crystal structure of ferritin soaked with iron from pseudo-nitzschia2 multiseries
81c3bvkC_



not modelled 93.1 15
PDB header:oxidoreductase
Chain: C: PDB Molecule:ferritin;
PDBTitle: structural basis for the iron uptake mechanism of helicobacter pylori2 ferritin
82c5wpnA_



not modelled 92.6 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:ferritin;
PDBTitle: zn-bound structure of chaetopterus variopedatus ferritin
83c1yuzB_



not modelled 92.2 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:nigerythrin;
PDBTitle: partially reduced state of nigerythrin
84c3qd8M_



not modelled 91.3 14
PDB header:metal binding protein
Chain: M: PDB Molecule:probable bacterioferritin bfrb;
PDBTitle: crystal structure of mycobacterium tuberculosis bfrb
85c3pm5B_



not modelled 90.7 12
PDB header:oxidoreductase
Chain: B: PDB Molecule:benzoyl-coa oxygenase component b;
PDBTitle: crystal structure of boxb in mixed valent state with bound benzoyl-coa
86c4cmyN_



not modelled 89.9 16
PDB header:metal transport
Chain: N: PDB Molecule:ferritin;
PDBTitle: chlorobium tepidum ferritin
87d1r03a_



not modelled 89.1 11
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
88c3vnxA_



not modelled 88.8 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:ferritin;
PDBTitle: crystal structure of ferritin from multicellular green algae, ulva2 pertusa.
89d1s3qa1



not modelled 87.9 15
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
90d1euma_



not modelled 86.7 12
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
91c3qz3A_



not modelled 86.2 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:ferritin;
PDBTitle: the crystal structure of ferritin from vibrio cholerae o1 biovar el2 tor str. n16961
92d2ceia1



not modelled 85.6 11
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
93d2za7a1



not modelled 85.5 10
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
94d1lb3a_



not modelled 84.8 8
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
95c2innA_



not modelled 83.6 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:phenol hydroxylase component phn;
PDBTitle: structure of the phenol hydroxyalse-regulatory protein complex
96c2jd8C_



not modelled 82.6 15
PDB header:metal transport
Chain: C: PDB Molecule:ferritin homolog;
PDBTitle: crystal structure of the zn-soaked ferritin from the2 hyperthermophilic archaeal anaerobe pyrococcus furiosus
97d1mfra_



not modelled 82.4 10
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
98d1rcda_



not modelled 81.6 9
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
99d2cwla1



not modelled 81.6 19
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Manganese catalase (T-catalase)
100d1otka_



not modelled 80.9 10
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
101c3oghB_



not modelled 78.1 9
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:protein ycie;
PDBTitle: crystal structure of ycie protein from e. coli cft073, a member of2 ferritine-like superfamily of diiron-containing four-helix-bundle3 proteins
102c6a4uD_



not modelled 77.6 12
PDB header:metal binding protein
Chain: D: PDB Molecule:ferritin;
PDBTitle: the first crystal structure of crustacean ferritin that is a hybrid2 type of h and l ferritin
103c3a9qR_



not modelled 73.4 11
PDB header:oxidoreductase
Chain: R: PDB Molecule:
PDBTitle: crystal structure analysis of e173a variant of the soybean2 ferritin sfer4
104d1z6om1



not modelled 51.8 16
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
105d1nera_



not modelled 45.3 17
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
106c3dhgB_



not modelled 43.0 10
PDB header:oxidoreductase
Chain: B: PDB Molecule:toluene 4-monooxygenase hydroxylase beta subunit;
PDBTitle: crystal structure of toluene 4-monoxygenase hydroxylase
107c5ux1D_



not modelled 41.8 18
PDB header:lyase
Chain: D: PDB Molecule:trna-(ms(2)io(6)a)-hydroxylase-like;
PDBTitle: protein 43 with aldehyde deformylating oxygenase activity from2 synechococcus
108c3pk1A_



not modelled 35.9 17
PDB header:apoptosis/apoptosis regulator
Chain: A: PDB Molecule:induced myeloid leukemia cell differentiation protein mcl-
PDBTitle: crystal structure of mcl-1 in complex with the baxbh3 domain
109c2g39A_



not modelled 35.6 7
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:acetyl-coa hydrolase;
PDBTitle: crystal structure of coenzyme a transferase from pseudomonas2 aeruginosa
110c2csdB_



not modelled 30.9 17
PDB header:isomerase
Chain: B: PDB Molecule:topoisomerase v;
PDBTitle: crystal structure of topoisomerase v (61 kda fragment)
111d1mhyb_



not modelled 29.4 16
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
112c3wfwA_



not modelled 29.2 15
PDB header:oxygen transport
Chain: A: PDB Molecule:hemoglobin-like flavoprotein fused to roadblock/lc7 domain;
PDBTitle: crystal structure of the closed form of the hgbrl's globin domain
113d2itba1



not modelled 22.9 12
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:MiaE-like
114c3ddeB_



not modelled 22.9 8
PDB header:unknown function
Chain: B: PDB Molecule:tena/thi-4 protein, domain of unknown function with a heme
PDBTitle: crystal structure of a domain of unknown function with a heme2 oxygenase-like fold (sden_3740) from shewanella denitrificans os2173 at 2.30 a resolution
115c4wgiA_



not modelled 21.9 15
PDB header:apoptosis/inhibitor
Chain: A: PDB Molecule:maltose-binding periplasmic protein,induced myeloid
PDBTitle: a single diastereomer of a macrolactam core binds specifically to2 myeloid cell leukemia 1 (mcl1)

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