Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0826_(-)_919637_920692
DateFri Jul 26 01:50:41 BST 2019
Unique Job ID6e5512f2dc3218bc
SequenceVTQDTSATCP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:52.833 Y:50.959 Z:51.655
Model (left) based on template c5o1mA_
Top template information
PDB header:oxidoreductase
Chain: A: PDB Molecule:rubber oxygenase;
PDBTitle: structure of latex clearing protein lcp in the closed state
Confidence and coverage
Confidence: 99.3% Coverage: 67%
235 residues ( 67% of your sequence) have been modelled with 99.3% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5o1mA_



99.3 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:rubber oxygenase;
PDBTitle: structure of latex clearing protein lcp in the closed state
2c2ru8A_



39.1 13
PDB header:replication
Chain: A: PDB Molecule:primosomal protein 1;
PDBTitle: dnat c-terminal domain
3c4ou6A_



27.9 13
PDB header:replication/dna
Chain: A: PDB Molecule:primosomal protein 1;
PDBTitle: crystal structure of dnat84-153-dt10 ssdna complex form 1
4c5cuvB_



20.4 20
PDB header:metal binding protein
Chain: B: PDB Molecule:acidocalcisomal pyrophosphatase;
PDBTitle: crystal structure of trypanosoma cruzi vacuolar soluble2 pyrophosphatases in apo form
5d1g73a_



16.2 4
Fold:Spectrin repeat-like
Superfamily:Smac/diablo
Family:Smac/diablo
6c4plaA_



14.8 27
PDB header:transferase,hydrolase
Chain: A: PDB Molecule:chimera protein of phosphatidylinositol 4-kinase type 2-
PDBTitle: crystal structure of phosphatidyl inositol 4-kinase ii alpha in2 complex with atp
7c1unhD_



14.0 6
PDB header:cell cycle
Chain: D: PDB Molecule:cyclin-dependent kinase 5 activator 1;
PDBTitle: structural mechanism for the inhibition of cdk5-p25 by2 roscovitine, aloisine and indirubin.
8d1unld_



13.6 6
Fold:Cyclin-like
Superfamily:Cyclin-like
Family:Cyclin
9c4nk1B_



13.0 16
PDB header:oxygen binding
Chain: B: PDB Molecule:hemoglobin-like protein;
PDBTitle: crystal structure of phosphate-bound hell's gate globin iv
10c2e8mA_



12.3 22
PDB header:signaling protein
Chain: A: PDB Molecule:epidermal growth factor receptor kinase
PDBTitle: solution structure of the c-terminal sam-domain of2 epidermal growth receptor pathway substrate 8
11c4wiuA_



11.0 18
PDB header:lyase,transferase
Chain: A: PDB Molecule:phosphoenolpyruvate carboxykinase [gtp];
PDBTitle: crystal structure of pepck (rv0211) from mycobacterium tuberculosis in2 complex with oxalate and mn2+
12d1fewa_



10.5 4
Fold:Spectrin repeat-like
Superfamily:Smac/diablo
Family:Smac/diablo
13d1u7ka_



9.9 10
Fold:Retrovirus capsid protein, N-terminal core domain
Superfamily:Retrovirus capsid protein, N-terminal core domain
Family:Retrovirus capsid protein, N-terminal core domain
14c6fviA_



8.5 46
PDB header:cell cycle
Chain: A: PDB Molecule:centrosomal protein of 192 kda;
PDBTitle: ash / papd-like domain of human cep192 (papd-like domain 7)
15c2jspA_



8.2 14
PDB header:gene regulation
Chain: A: PDB Molecule:transcriptional regulatory protein ros;
PDBTitle: the prokaryotic cys2his2 zinc finger adopts a novel fold as2 revealed by the nmr structure of a. tumefaciens ros dna3 binding domain
16c1nexC_



7.8 12
PDB header:ligase, cell cycle
Chain: C: PDB Molecule:centromere dna-binding protein complex cbf3
PDBTitle: crystal structure of scskp1-sccdc4-cpd peptide complex
17d1v7ba2



7.8 9
Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
18c1mk2B_



7.7 44
PDB header:transcription
Chain: B: PDB Molecule:madh-interacting protein;
PDBTitle: smad3 sbd complex
19c4do7B_



7.6 23
PDB header:hydrolase
Chain: B: PDB Molecule:amidohydrolase 2;
PDBTitle: crystal structure of an amidohydrolase (cog3618) from burkholderia2 multivorans (target efi-500235) with bound zn, space group c2
20c6alyA_



7.4 13
PDB header:transcription
Chain: A: PDB Molecule:mediator of rna polymerase ii transcription subunit 15;
PDBTitle: solution structure of yeast med15 abd2 residues 277-368
21c3m20A_



not modelled 7.3 17
PDB header:isomerase
Chain: A: PDB Molecule:4-oxalocrotonate tautomerase, putative;
PDBTitle: crystal structure of dmpi from archaeoglobus fulgidus determined to2 2.37 angstroms resolution
22c3ucsB_



not modelled 7.3 8
PDB header:chaperone
Chain: B: PDB Molecule:chaperone-modulator protein cbpm;
PDBTitle: crystal structure of the complex between cbpa j-domain and cbpm
23c4umoB_



not modelled 7.1 26
PDB header:signaling protein
Chain: B: PDB Molecule:potassium voltage-gated channel subfamily kqt member 1;
PDBTitle: crystal structure of the kv7.1 proximal c-terminal domain in complex2 with calmodulin
24d16vpa_



not modelled 7.0 13
Fold:Conserved core of transcriptional regulatory protein vp16
Superfamily:Conserved core of transcriptional regulatory protein vp16
Family:Conserved core of transcriptional regulatory protein vp16
25d1xg7a_



not modelled 6.6 56
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:AgoG-like
26c3a08C_



not modelled 6.5 41
PDB header:structural protein
Chain: C: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-oog-(ppg)4, monoclinic, twinned crystal
27c2glwA_



not modelled 6.4 15
PDB header:transcription
Chain: A: PDB Molecule:92aa long hypothetical protein;
PDBTitle: the solution structure of phs018 from pyrococcus horikoshii
28c2ovqA_



not modelled 6.3 14
PDB header:transcription/cell cycle
Chain: A: PDB Molecule:s-phase kinase-associated protein 1a;
PDBTitle: structure of the skp1-fbw7-cyclinedegc complex
29d1iwma_



not modelled 6.1 33
Fold:LolA-like prokaryotic lipoproteins and lipoprotein localization factors
Superfamily:Prokaryotic lipoproteins and lipoprotein localization factors
Family:Outer membrane lipoprotein receptor LolB
30c4fdxB_



not modelled 5.9 19
PDB header:isomerase
Chain: B: PDB Molecule:4-oxalocrotonase tautomerase isozyme;
PDBTitle: kinetic and structural characterization of the 4-oxalocrotonate2 tautomerase isozymes from methylibium petroleiphilum
31c3a08F_



not modelled 5.9 50
PDB header:structural protein
Chain: F: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-oog-(ppg)4, monoclinic, twinned crystal
32c4okmA_



not modelled 5.8 19
PDB header:transferase
Chain: A: PDB Molecule:terpene synthase metal-binding domain-containing protein;
PDBTitle: selinadiene synthase apo and in complex with diphosphate
33c2bmmA_



not modelled 5.7 9
PDB header:oxygen storage/transport
Chain: A: PDB Molecule:thermostable hemoglobin from thermobifida fusca;
PDBTitle: x-ray structure of a novel thermostable hemoglobin from the2 actinobacterium thermobifida fusca
34c3zs9D_



not modelled 5.6 53
PDB header:hydrolase/transport protein
Chain: D: PDB Molecule:golgi to er traffic protein 2;
PDBTitle: s. cerevisiae get3-adp-alf4- complex with a cytosolic get2 fragment
35d2gica1



not modelled 5.5 26
Fold:Rhabdovirus nucleoprotein-like
Superfamily:Rhabdovirus nucleoprotein-like
Family:Rhabdovirus nucleocapsid protein
36c5k21C_



not modelled 5.5 71
PDB header:oxidoreductase
Chain: C: PDB Molecule:pyocyanin demethylase;
PDBTitle: pyocyanin demethylase
37d1q3ma_



not modelled 5.5 31
Fold:GLA-domain
Superfamily:GLA-domain
Family:GLA-domain
38d2g3ba2



not modelled 5.4 9
Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
39c3a08E_



not modelled 5.3 50
PDB header:structural protein
Chain: E: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-oog-(ppg)4, monoclinic, twinned crystal
40c2d3hF_



not modelled 5.3 50
PDB header:structural protein
Chain: F: PDB Molecule:collagen model peptides (pro-pro-gly)4-hyp-hyp-
PDBTitle: crystal structures of collagen model peptides (pro-pro-gly)2 4-hyp-hyp-gly-(pro-pro-gly)4
41c5yo8B_



not modelled 5.3 22
PDB header:lyase
Chain: B: PDB Molecule:tetraprenyl-beta-curcumene synthase;
PDBTitle: crystal structure of beta-c25/c30/c35-prene synthase
42c2zc2A_



not modelled 5.2 17
PDB header:replication
Chain: A: PDB Molecule:dnad-like replication protein;
PDBTitle: crystal structure of dnad-like replication protein from streptococcus2 mutans ua159, gi 24377835, residues 127-199
43d1eyxa_



not modelled 5.1 13
Fold:Globin-like
Superfamily:Globin-like
Family:Phycocyanin-like phycobilisome proteins
44c4ue8B_



not modelled 5.1 39
PDB header:translation
Chain: B: PDB Molecule:4e-binding protein thor;
PDBTitle: complex of d. melanogaster eif4e with the 4e binding protein thor
45d1nb4a_



not modelled 5.1 13
Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:RNA-dependent RNA-polymerase
46c2d3hC_



not modelled 5.1 43
PDB header:structural protein
Chain: C: PDB Molecule:collagen model peptides (pro-pro-gly)4-hyp-hyp-
PDBTitle: crystal structures of collagen model peptides (pro-pro-gly)2 4-hyp-hyp-gly-(pro-pro-gly)4

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Transmembrane helix prediction 

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