Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0828c_(-)_921194_921616
DateFri Jul 26 01:50:41 BST 2019
Unique Job ID61d0a6c0016bfa34
SequenceMPAGMAGFRR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:50.058 Y:46.601 Z:35.479
Model (left) based on template d2g84a1
Top template information
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
Confidence and coverage
Confidence:100.0% Coverage: 83%
116 residues ( 83% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2g84a1



100.0 27
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
2d1wkqa_



100.0 29
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
3c2nx8A_



100.0 27
PDB header:hydrolase
Chain: A: PDB Molecule:trna-specific adenosine deaminase;
PDBTitle: the crystal structure of the trna-specific adenosine deaminase from2 streptococcus pyogenes
4c3ocqA_



100.0 25
PDB header:hydrolase
Chain: A: PDB Molecule:putative cytosine/adenosine deaminase;
PDBTitle: crystal structure of trna-specific adenosine deaminase from salmonella2 enterica
5d1z3aa1



99.9 23
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
6d1wwra1



99.9 26
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
7d2b3ja1



99.9 24
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
8c3dh1D_



99.9 21
PDB header:hydrolase
Chain: D: PDB Molecule:trna-specific adenosine deaminase 2;
PDBTitle: crystal structure of human trna-specific adenosine-34 deaminase2 subunit adat2
9c5xkrA_



99.9 16
PDB header:hydrolase
Chain: A: PDB Molecule:cmp/dcmp deaminase, zinc-binding protein;
PDBTitle: crystal structure of msmeg3575 in complex with benzoguanamine
10c5jfyC_



99.9 32
PDB header:hydrolase
Chain: C: PDB Molecule:deoxycytidine deaminase;
PDBTitle: crystal structure of a plant cytidine deaminase
11d2a8na1



99.9 30
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
12d1p6oa_



99.9 18
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
13d2b3za2



99.9 19
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
14c2o7pA_



99.9 23
PDB header:hydrolase, oxidoreductase
Chain: A: PDB Molecule:riboflavin biosynthesis protein ribd;
PDBTitle: the crystal structure of ribd from escherichia coli in complex with2 the oxidised nadp+ cofactor in the active site of the reductase3 domain
15c2d5nB_



99.8 18
PDB header:hydrolase, oxidoreductase
Chain: B: PDB Molecule:riboflavin biosynthesis protein ribd;
PDBTitle: crystal structure of a bifunctional deaminase and reductase2 involved in riboflavin biosynthesis
16c4p9eA_



99.8 24
PDB header:hydrolase
Chain: A: PDB Molecule:deoxycytidylate deaminase;
PDBTitle: crystal structure of dcmp deaminase from the cyanophage s-tim5 in apo2 form
17c2w4lC_



99.8 23
PDB header:hydrolase
Chain: C: PDB Molecule:deoxycytidylate deaminase;
PDBTitle: human dcmp deaminase
18c3zpgA_



99.8 20
PDB header:hydrolase
Chain: A: PDB Molecule:ribd;
PDBTitle: acinetobacter baumannii ribd, form 2
19c2hxvA_



99.8 23
PDB header:biosynthetic protein
Chain: A: PDB Molecule:diaminohydroxyphosphoribosylaminopyrimidine deaminase/ 5-
PDBTitle: crystal structure of a diaminohydroxyphosphoribosylaminopyrimidine2 deaminase/ 5-amino-6-(5-phosphoribosylamino)uracil reductase (tm1828)3 from thermotoga maritima at 1.80 a resolution
20d1vq2a_



99.8 19
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
21c2hvwC_



not modelled 99.8 26
PDB header:hydrolase
Chain: C: PDB Molecule:deoxycytidylate deaminase;
PDBTitle: crystal structure of dcmp deaminase from streptococcus mutans
22d2hxva2



not modelled 99.8 12
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
23c5k83C_



not modelled 96.4 21
PDB header:hydrolase
Chain: C: PDB Molecule:apolipoprotein b mrna editing enzyme, catalytic peptide-
PDBTitle: crystal structure of a primate apobec3g n-domain, in complex with2 ssdna
24c3g8qA_



not modelled 96.3 31
PDB header:rna binding protein
Chain: A: PDB Molecule:predicted rna-binding protein, contains thump
PDBTitle: a cytidine deaminase edits c-to-u in transfer rnas in2 archaea
25c3vowB_



not modelled 96.2 22
PDB header:hydrolase
Chain: B: PDB Molecule:probable dna dc->du-editing enzyme apobec-3c;
PDBTitle: crystal structure of the human apobec3c having hiv-1 vif-binding2 interface
26c5tkmA_



not modelled 95.8 29
PDB header:hydrolase
Chain: A: PDB Molecule:dna dc->du-editing enzyme apobec-3b;
PDBTitle: crystal structure of human apobec3b n-terminal domain
27c2nytB_



not modelled 95.5 19
PDB header:hydrolase
Chain: B: PDB Molecule:probable c->u-editing enzyme apobec-2;
PDBTitle: the apobec2 crystal structure and functional implications2 for aid
28d2fr5a1



not modelled 94.7 23
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
29d1mq0a_



not modelled 94.6 20
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
30d1r5ta_



not modelled 94.1 10
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
31c6b0bE_



not modelled 94.0 24
PDB header:hydrolase/rna
Chain: E: PDB Molecule:apobec3h;
PDBTitle: crystal structure of human apobec3h
32c2kboA_



not modelled 93.6 18
PDB header:hydrolase
Chain: A: PDB Molecule:dna dc->du-editing enzyme apobec-3g;
PDBTitle: structure, interaction, and real-time monitoring of the2 enzymatic reaction of wild type apobec3g
33d2d30a1



not modelled 93.0 21
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
34c3ijfX_



not modelled 92.4 20
PDB header:hydrolase
Chain: X: PDB Molecule:cytidine deaminase;
PDBTitle: crystal structure of cytidine deaminase from mycobacterium2 tuberculosis
35d1uwza_



not modelled 92.3 21
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
36d1alna1



not modelled 92.0 29
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
37c3r2nC_



not modelled 91.5 22
PDB header:hydrolase
Chain: C: PDB Molecule:cytidine deaminase;
PDBTitle: crystal structure of cytidine deaminase from mycobacterium leprae
38c6bwyA_



not modelled 91.5 22
PDB header:hydrolase
Chain: A: PDB Molecule:protection of telomeres protein 1, dna dc->du-editing
PDBTitle: dna substrate selection by apobec3g
39c2m65A_



not modelled 90.9 21
PDB header:hydrolase
Chain: A: PDB Molecule:probable dna dc->du-editing enzyme apobec-3a;
PDBTitle: nmr structure of human restriction factor apobec3a
40c2mzzA_



not modelled 90.3 19
PDB header:hydrolase, antiviral protein
Chain: A: PDB Molecule:apolipoprotein b mrna-editing enzyme, catalytic
PDBTitle: nmr structure of apobec3g ntd variant, sntd
41c3dmoD_



not modelled 89.7 19
PDB header:hydrolase
Chain: D: PDB Molecule:cytidine deaminase;
PDBTitle: 1.6 a crystal structure of cytidine deaminase from burkholderia2 pseudomallei
42c3oj6C_



not modelled 88.8 15
PDB header:hydrolase
Chain: C: PDB Molecule:blasticidin-s deaminase;
PDBTitle: crystal structure of blasticidin s deaminase from coccidioides immitis
43c3b8fB_



not modelled 88.5 20
PDB header:hydrolase
Chain: B: PDB Molecule:putative blasticidin s deaminase;
PDBTitle: crystal structure of the cytidine deaminase from bacillus anthracis
44c1alnA_



not modelled 84.6 27
PDB header:hydrolase
Chain: A: PDB Molecule:cytidine deaminase;
PDBTitle: crystal structure of cytidine deaminase complexed with 3-deazacytidine
45d2z3ga1



not modelled 81.4 19
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
46c4eg2G_



not modelled 81.1 15
PDB header:hydrolase
Chain: G: PDB Molecule:cytidine deaminase;
PDBTitle: 2.2 angstrom crystal structure of cytidine deaminase from vibrio2 cholerae in complex with zinc and uridine
47d1alna2



not modelled 80.6 10
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
48c1zy7A_



not modelled 73.5 44
PDB header:hydrolase
Chain: A: PDB Molecule:rna-specific adenosine deaminase b1, isoform
PDBTitle: crystal structure of the catalytic domain of an adenosine2 deaminase that acts on rna (hadar2) bound to inositol3 hexakisphosphate (ihp)
49d2hi7b1



not modelled 49.1 43
Fold:Bromodomain-like
Superfamily:DsbB-like
Family:DsbB-like
50c3e9jC_



not modelled 49.0 43
PDB header:oxidoreductase
Chain: C: PDB Molecule:thiol/disulfide oxidoreductase dsbb;
PDBTitle: structure of the charge-transfer intermediate of the2 transmembrane redox catalyst dsbb
51c2k74A_



not modelled 43.8 29
PDB header:membrane protein, oxidoreductase
Chain: A: PDB Molecule:disulfide bond formation protein b;
PDBTitle: solution nmr structure of dsbb-ubiquinone complex
52c3nznA_



not modelled 25.6 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutaredoxin;
PDBTitle: the crystal structure of the glutaredoxin from methanosarcina mazei2 go1
53d2hqya1



not modelled 24.6 19
Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:FemXAB nonribosomal peptidyltransferases
54c3gxgA_



not modelled 19.8 15
PDB header:hydrolase
Chain: A: PDB Molecule:putative phosphatase (duf442);
PDBTitle: crystal structure of putative phosphatase (duf442) (yp_001181608.1)2 from shewanella putrefaciens cn-32 at 1.60 a resolution
55c3d5jB_



not modelled 19.2 10
PDB header:oxidoreductase
Chain: B: PDB Molecule:glutaredoxin-2, mitochondrial;
PDBTitle: structure of yeast grx2-c30s mutant with glutathionyl mixed disulfide
56c5y4uA_



not modelled 19.0 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:monothiol glutaredoxin-3;
PDBTitle: crystal structure of grx domain of grx3 from saccharomyces cerevisiae
57c2muqA_



not modelled 14.7 50
PDB header:ubiquitin binding protein
Chain: A: PDB Molecule:fanconi anemia-associated protein of 20 kda;
PDBTitle: solution structure of the human faap20 ubz
58c2murA_



not modelled 14.1 50
PDB header:protein binding
Chain: A: PDB Molecule:fanconi anemia-associated protein of 20 kda;
PDBTitle: solution structure of the human faap20 ubz-ubiquitin complex
59c3ld0Q_



not modelled 14.1 63
PDB header:gene regulation
Chain: Q: PDB Molecule:inhibitor of trap, regulated by t-box (trp) sequence rtpa;
PDBTitle: crystal structure of b.licheniformis anti-trap protein, an antagonist2 of trap-rna interactions
60c5cx2B_



not modelled 13.7 43
PDB header:structural protein
Chain: B: PDB Molecule:coronin;
PDBTitle: structure of coiled coil domain of leishmania donovani coronin
61c5cx2C_



not modelled 13.3 43
PDB header:structural protein
Chain: C: PDB Molecule:coronin;
PDBTitle: structure of coiled coil domain of leishmania donovani coronin
62c4tr1A_



not modelled 12.9 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutaredoxin 3;
PDBTitle: crystal structure of gsh-bound cgrx2/c15s
63c3ipzA_



not modelled 12.7 10
PDB header:electron transport, oxidoreductase
Chain: A: PDB Molecule:monothiol glutaredoxin-s14, chloroplastic;
PDBTitle: crystal structure of arabidopsis monothiol glutaredoxin atgrxcp
64c4e17B_



not modelled 11.7 46
PDB header:cell adhesion
Chain: B: PDB Molecule:catenin alpha-1;
PDBTitle: alpha-e-catenin is an autoinhibited molecule that co-activates2 vinculin
65d1ttza_



not modelled 11.5 27
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
66d1vdda_



not modelled 11.0 20
Fold:Recombination protein RecR
Superfamily:Recombination protein RecR
Family:Recombination protein RecR
67c1vddC_



not modelled 9.8 20
PDB header:recombination
Chain: C: PDB Molecule:recombination protein recr;
PDBTitle: crystal structure of recombinational repair protein recr
68c5xftA_



not modelled 9.8 27
PDB header:oxidoreductase
Chain: A: PDB Molecule:dehydroascorbate reductase;
PDBTitle: crystal structure of chlamydomonas reinhardtii dehydroascorbate2 reductase
69c5yt6B_



not modelled 9.3 80
PDB header:protein binding
Chain: B: PDB Molecule:tax1-binding protein 1;
PDBTitle: crystal structure of tax1bp1 ubz2 in complex with mono-ubiquitin
70d1egoa_



not modelled 9.1 18
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
71c5aj3p_



not modelled 8.9 56
PDB header:ribosome
Chain: P: PDB Molecule:mitoribosomal protein bs16m, mrps16;
PDBTitle: structure of the small subunit of the mammalian mitoribosome
72d2drpa2



not modelled 8.3 80
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
73c3ve5D_



not modelled 8.0 27
PDB header:recombination
Chain: D: PDB Molecule:recombination protein recr;
PDBTitle: structure of recombination mediator protein recr16-196 deletion mutant
74c5y7iB_



not modelled 8.0 25
PDB header:transport protein
Chain: B: PDB Molecule:chloride intracellular channel protein 2;
PDBTitle: structure of tilapia fish clic2
75c3h8qB_



not modelled 7.8 11
PDB header:oxidoreductase
Chain: B: PDB Molecule:thioredoxin reductase 3;
PDBTitle: crystal structure of glutaredoxin domain of human thioredoxin2 reductase 3
76c3lq9B_



not modelled 7.6 18
PDB header:signaling protein
Chain: B: PDB Molecule:dna-damage-inducible transcript 4 protein;
PDBTitle: crystal structure of human redd1, a hypoxia-induced regulator of mtor
77c2khpA_



not modelled 7.6 23
PDB header:electron transport
Chain: A: PDB Molecule:glutaredoxin;
PDBTitle: solution structure of glutaredoxin from brucella melitensis
78c6gv7A_



not modelled 7.0 43
PDB header:metal binding protein
Chain: A: PDB Molecule:metallothionein;
PDBTitle: cadmium(ii) form of a44h mutant of shortened metallothionein from2 pseudomonas fluorescens q2-87 (residues 1-52)
79c5z2vB_



not modelled 7.0 27
PDB header:dna binding protein
Chain: B: PDB Molecule:recombination protein recr;
PDBTitle: crystal structure of recr from pseudomonas aeruginosa pao1
80c2klxA_



not modelled 7.0 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutaredoxin;
PDBTitle: solution structure of glutaredoxin from bartonella henselae str.2 houston
81d1nuia2



not modelled 7.0 27
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:DNA primase zinc finger
82c2i7uA_



not modelled 6.9 14
PDB header:de novo protein/ligand binding protein
Chain: A: PDB Molecule:four-alpha-helix bundle;
PDBTitle: structural and dynamical analysis of a four-alpha-helix2 bundle with designed anesthetic binding pockets
83c2bx9J_



not modelled 6.5 71
PDB header:transcription regulation
Chain: J: PDB Molecule:tryptophan rna-binding attenuator protein-inhibitory
PDBTitle: crystal structure of b.subtilis anti-trap protein, an2 antagonist of trap-rna interactions
84c3zywB_



not modelled 6.1 11
PDB header:metal binding protein
Chain: B: PDB Molecule:glutaredoxin-3;
PDBTitle: crystal structure of the first glutaredoxin domain of human2 glutaredoxin 3 (glrx3)
85c2c4rL_



not modelled 5.7 56
PDB header:hydrolase
Chain: L: PDB Molecule:ribonuclease e;
PDBTitle: catalytic domain of e. coli rnase e
86d1h75a_



not modelled 5.6 18
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase

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