Phyre 2 Results for RVBD0833_(PE_PGRS13)_925364

Email	mdejesus@rockefeller.edu
Description	RVBD0833_(PE_PGRS13)_925364_927613
Date	Fri Jul 26 01:50:42 BST 2019
Unique Job ID	0c1277b4a26c86a7
Sequence	LIGNGGAGGS ... Download FASTA
Job Type	normal
Job Expiry

Summary

Top model

Image coloured by rainbow N → C terminus

Model dimensions (Å):

X:55.000 Y:44.774 Z:2601.333

Model (left) based on template c1ygvA_

Top template information

PDB header:structural protein/contractile protein
Chain: A: PDB Molecule:collagen i alpha 1;
PDBTitle: the structure of collagen type i. single type i collagen2 molecule: rigid refinment

Confidence and coverage

Confidence:

100.0%

Coverage:

99%

744 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.

Warning: 100% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.

3D viewing

Interactive 3D view in JSmol

For other options to view your downloaded structure offline see the FAQ

Sequence analysis

Download FASTA version

Secondary structure and disorder prediction [Show]

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60

Sequence L I G N G G A G G S G A P G A I G G A G G P A G L I G V G G A G G A G G D S A V A G V I G G A G G A G G A A L L F G A G

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 70 . . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120

Sequence G A G G A G G S G G S G A A G G A G G A G G A G G L F A S G G S G G F G G F A S T G T G G A G G T G G A G G L F A S G G

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 130 . . . . . . . . . 140 . . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180

Sequence V G G T G G G A G S G G T G G V G G T G G A G G L F A S G G A G G A G G S G G T G G A G G T G G A G G L F G A G G A G G

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210 . . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240

Sequence L G G Q G N H T G G H G G A G G S A G L L A L G D G G A G G A G G A A T T G T G G A G G A G G K A G L L F G S G G A G G

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280 . . . . . . . . . 290 . . . . . . . . . 300

Sequence S G G A A G T F G D T G N S G G A G G A G G K A G L L F G S G G A G G S G G A G G F A N G S T G G A G G A G G G A G L I

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350 . . . . . . . . . 360

Sequence G N G G N G G S G G T S V A T G G A G N G G A G G A G G G A G L I G N G G N G G S G G M G D A P G G T G V G G I G G L L

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence L G L D G A N A P A S T N P L H T A Q Q Q A L A A V N A P I Q A V T G R P L I G N G A N G A P G S G A P G G H G G W L F

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480

Sequence G G G G T G G S G V S G G A G G D G G A G G I L F G A G G A G G A G G A V T G T G A T G G S G G A G G G A L L F G A G G

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 490 . . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540

Sequence A G G A G G S S G I G G F A A G G A G G P G G A G G L F N G G G A G G A G G S G V S G G A G G E G G A G G A G G L F A G

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 550 . . . . . . . . . 560 . . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600

Sequence G G A G G A G G S G N N V G G A G G A G G V G G L F G A G G A G G S G G G G S V A G D G G A G G N A G L L A P G L A G G

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630 . . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660

Sequence A G G G G G Q G F D T G G A G G P G G D A G L L V G S G G V G G A G G F G L T T G G P G A A G G D A G L L F G S G G A G

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700 . . . . . . . . . 710 . . . . . . . . . 720

Sequence G A G G S G R T D L G G A G G A G G K A G L I G N G G N G G A G G A G G N G G G D G G P G G A A F G L G N G G N G G N G

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . .

Sequence G T G T S A G S P G A G G A G G S L I G A E G L P G L L P

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

Confidence Key
High(9) Low (0)

? Disordered (100%)

Alpha helix ( 0%)

Beta strand ( 0%)

Domain analysis [Show]

Rank Aligned region

PDB 1ygv chain A

3D model

Region: 2 - 747
Aligned: 744
Modelled: 746
Confidence: 100.0%
Identity: 29%
PDB header:structural protein/contractile protein
Chain: A: PDB Molecule:collagen i alpha 1;
PDBTitle: the structure of collagen type i. single type i collagen2 molecule: rigid refinment

Phyre2

PDB 1y0f chain B

3D model

Region: 1 - 747
Aligned: 743
Modelled: 746
Confidence: 99.8%
Identity: 29%
PDB header:structural protein/contractile protein
Chain: B: PDB Molecule:collagen i alpha 2;
PDBTitle: the structure of collagen type i. single type i collagen2 molecule

Phyre2

PDB 3hqv chain B

3D model

Region: 3 - 747
Aligned: 734
Modelled: 744
Confidence: 99.8%
Identity: 27%
PDB header:structural protein, contractile protein
Chain: B: PDB Molecule:collagen alpha-2(i) chain;
PDBTitle: low resolution, molecular envelope structure of type i2 collagen in situ determined by fiber diffraction. single3 type i collagen molecule, rigid body refinement

Phyre2

PDB 2pne chain A

3D model

Region: 23 - 104
Aligned: 80
Modelled: 82
Confidence: 97.9%
Identity: 36%
PDB header:antifreeze protein
Chain: A: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: crystal structure of the snow flea antifreeze protein

Phyre2

PDB 3boi chain B

3D model

Region: 23 - 104
Aligned: 80
Modelled: 82
Confidence: 97.9%
Identity: 36%
PDB header:antifreeze protein
Chain: B: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: snow flea antifreeze protein racemate

Phyre2

PDB 3boi chain A

3D model

Region: 23 - 104
Aligned: 80
Modelled: 82
Confidence: 97.9%
Identity: 36%
PDB header:antifreeze protein
Chain: A: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: snow flea antifreeze protein racemate

Phyre2

PDB 3bog chain A

3D model

Region: 23 - 104
Aligned: 79
Modelled: 82
Confidence: 97.9%
Identity: 38%
PDB header:antifreeze protein
Chain: A: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: snow flea antifreeze protein quasi-racemate

Phyre2

PDB 3bog chain B

3D model

Region: 23 - 104
Aligned: 79
Modelled: 78
Confidence: 97.9%
Identity: 38%
PDB header:antifreeze protein
Chain: B: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: snow flea antifreeze protein quasi-racemate

Phyre2

PDB 5ctd chain B

3D model

Region: 15 - 53
Aligned: 39
Modelled: 39
Confidence: 96.4%
Identity: 28%
PDB header:structural protein
Chain: B: PDB Molecule:collagen alpha-2(i) chain,collagen alpha-2(ix) chain;
PDBTitle: crystal structure of the type ix collagen nc2 hetero-trimerization2 domain with a guest fragment a2a1a1 of type i collagen

Phyre2

PDB 2ml3 chain A

3D model

Region: 655 - 726
Aligned: 72
Modelled: 72
Confidence: 96.2%
Identity: 24%
PDB header:isomerase
Chain: A: PDB Molecule:poly(beta-d-mannuronate) c5 epimerase 6;
PDBTitle: solution structure of alge6r3 subunit from the azotobacter vinelandii2 mannuronan c5-epimerase

Phyre2

PDB 1k7q chain A

3D model

Region: 646 - 718
Aligned: 73
Modelled: 73
Confidence: 96.1%
Identity: 25%
PDB header:hydrolase
Chain: A: PDB Molecule:secreted protease c;
PDBTitle: prtc from erwinia chrysanthemi: e189a mutant

Phyre2

PDB 5cti chain C

Region: 17 - 54
Aligned: 38
Modelled: 38
Confidence: 95.8%
Identity: 37%
PDB header:structural protein
Chain: C: PDB Molecule:collagen alpha-1(i) chain,collagen alpha-3(ix) chain;
PDBTitle: crystal structure of the type ix collagen nc2 hetero-trimerization2 domain with a guest fragment a2a1a1 of type i collagen (native form)

Phyre2

PDB 5ctd chain A

3D model

Region: 17 - 54
Aligned: 38
Modelled: 38
Confidence: 95.8%
Identity: 37%
PDB header:structural protein
Chain: A: PDB Molecule:collagen alpha-1(i) chain,collagen alpha-1(ix) chain;
PDBTitle: crystal structure of the type ix collagen nc2 hetero-trimerization2 domain with a guest fragment a2a1a1 of type i collagen

Phyre2

PDB 1nay chain C

3D model

Region: 9 - 54
Aligned: 46
Modelled: 46
Confidence: 95.7%
Identity: 24%
PDB header:structural protein
Chain: C: PDB Molecule:collagen-like peptide;
PDBTitle: gpp-foldon:x-ray structure

Phyre2

PDB 2ml2 chain A

Region: 648 - 716
Aligned: 69
Modelled: 69
Confidence: 95.5%
Identity: 23%
PDB header:isomerase
Chain: A: PDB Molecule:poly(beta-d-mannuronate) c5 epimerase 6;
PDBTitle: solution structure of alge6r2 subunit from the azotobacter vinelandii2 mannuronan c5-epimerase

Phyre2

PDB 1k7i chain A domain 1

3D model

Region: 646 - 717
Aligned: 72
Modelled: 72
Confidence: 95.2%
Identity: 25%
Fold: Single-stranded right-handed beta-helix
Superfamily: beta-Roll
Family: Serralysin-like metalloprotease, C-terminal domain

Phyre2

PDB 2agm chain A

Region: 658 - 717
Aligned: 60
Modelled: 60
Confidence: 95.0%
Identity: 23%
PDB header:isomerase
Chain: A: PDB Molecule:poly(beta-d-mannuronate) c5 epimerase 4;
PDBTitle: solution structure of the r-module from alge4

Phyre2

PDB 1jiw chain P

3D model

Region: 646 - 722
Aligned: 77
Modelled: 77
Confidence: 94.9%
Identity: 22%
PDB header:hydrolase/hyrolase inhibitor
Chain: P: PDB Molecule:alkaline metalloproteinase;
PDBTitle: crystal structure of the apr-aprin complex

Phyre2

PDB 1kap chain P domain 1

3D model

Region: 646 - 722
Aligned: 77
Modelled: 77
Confidence: 94.1%
Identity: 22%
Fold: Single-stranded right-handed beta-helix
Superfamily: beta-Roll
Family: Serralysin-like metalloprotease, C-terminal domain

Phyre2

PDB 2zj6 chain A

Region: 3 - 179
Aligned: 177
Modelled: 177
Confidence: 93.8%
Identity: 18%
PDB header:hydrolase
Chain: A: PDB Molecule:lipase;
PDBTitle: crystal structure of d337a mutant of pseudomonas sp. mis38 lipase

Phyre2

1
c1ygvA_

2
c1y0fB_

3
c3hqvB_

4
c2pneA_

5
c3boiB_

6
c3boiA_

7
c3bogA_

8
c3bogB_

9
c5ctdB_

10
c2ml3A_

11
c1k7qA_

12
c5ctiC_

13
c5ctdA_

14
c1nayC_

15
c2ml2A_

16
d1k7ia1

17
c2agmA_

18
c1jiwP_

19
d1kapp1

20
c2zj6A_

21

22

23

24

25

26

27

28