Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0836c_(-)_932282_932935
DateFri Jul 26 01:50:42 BST 2019
Unique Job IDfe9cdcacfda80305
SequenceMLVGAQCRDL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:45.182 Y:53.067 Z:38.518
Model (left) based on template c5uvdA_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:nucleotidyltransferase-like protein;
PDBTitle: crystal structure of an antigenic nucleotidyltransferase-like protein2 from paracoccidioides brasiliensis
Confidence and coverage
Confidence: 99.4% Coverage: 73%
158 residues ( 73% of your sequence) have been modelled with 99.4% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5uvdA_



99.4 18
PDB header:transferase
Chain: A: PDB Molecule:nucleotidyltransferase-like protein;
PDBTitle: crystal structure of an antigenic nucleotidyltransferase-like protein2 from paracoccidioides brasiliensis
2c4wqkA_



99.0 21
PDB header:transferase
Chain: A: PDB Molecule:2''-aminoglycoside nucleotidyltransferase;
PDBTitle: crystal structure of aminoglycoside nucleotidylyltransferase ant(2")-2 ia, apo form
3c4e8iA_



98.2 14
PDB header:transferase
Chain: A: PDB Molecule:lincosamide resistance protein;
PDBTitle: crystal structure of lincosamide antibiotic adenylyltransferase lina,2 apo
4c4ok0B_



97.4 17
PDB header:transferase
Chain: B: PDB Molecule:putative;
PDBTitle: crystal structure of putative nucleotidyltransferase from h. pylori
5c1vfgB_



96.9 15
PDB header:transferase/rna
Chain: B: PDB Molecule:poly a polymerase;
PDBTitle: crystal structure of trna nucleotidyltransferase complexed2 with a primer trna and an incoming atp analog
6c4x4wB_



96.1 19
PDB header:rna binding protein
Chain: B: PDB Molecule:cca trna nucleotidyltransferase 1, mitochondrial;
PDBTitle: crystal structure of the full-length human mitochondrial cca-adding2 enzyme
7d1vfga2



95.7 17
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Poly A polymerase head domain-like
8c3h37B_



95.1 27
PDB header:transferase
Chain: B: PDB Molecule:trna nucleotidyl transferase-related protein;
PDBTitle: the structure of cca-adding enzyme apo form i
9c6q52A_



95.1 23
PDB header:rna binding protein
Chain: A: PDB Molecule:cca-adding enzyme;
PDBTitle: structure of a psychrophilic cca-adding enzyme in complex with cmpcpp2 at room temperature in chipx microfluidic device
10d1r89a2



94.7 20
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Archaeal tRNA CCA-adding enzyme catalytic domain
11d1ou5a2



94.5 28
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Poly A polymerase head domain-like
12c1miyB_



94.3 29
PDB header:translation, transferase
Chain: B: PDB Molecule:trna cca-adding enzyme;
PDBTitle: crystal structure of bacillus stearothermophilus cca-adding enzyme in2 complex with ctp
13c3wfsD_



94.1 21
PDB header:transferase/rna
Chain: D: PDB Molecule:poly a polymerase;
PDBTitle: trna processing enzyme complex 3
14c3wfpA_



94.0 21
PDB header:transferase
Chain: A: PDB Molecule:poly a polymerase;
PDBTitle: trna processing enzyme (apo form 2)
15c3wfrG_



93.9 21
PDB header:transferase/rna
Chain: G: PDB Molecule:poly a polymerase;
PDBTitle: trna processing enzyme complex 2
16c3aqnA_



93.6 17
PDB header:transferase
Chain: A: PDB Molecule:poly(a) polymerase;
PDBTitle: complex structure of bacterial protein (apo form ii)
17c3wfrH_



92.9 21
PDB header:transferase/rna
Chain: H: PDB Molecule:poly a polymerase;
PDBTitle: trna processing enzyme complex 2
18c3wfoB_



92.7 18
PDB header:transferase
Chain: B: PDB Molecule:poly a polymerase;
PDBTitle: trna processing enzyme (apo form 1)
19c3wfrE_



92.5 18
PDB header:transferase/rna
Chain: E: PDB Molecule:poly a polymerase;
PDBTitle: trna processing enzyme complex 2
20d1miwa2



92.5 39
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Poly A polymerase head domain-like
21c3wfrF_



not modelled 92.2 19
PDB header:transferase/rna
Chain: F: PDB Molecule:poly a polymerase;
PDBTitle: trna processing enzyme complex 2
22c3wfqG_



not modelled 91.6 19
PDB header:transferase/rna
Chain: G: PDB Molecule:poly a polymerase;
PDBTitle: trna processing enzyme complex 1
23c1ou5A_



not modelled 91.4 30
PDB header:translation, transferase
Chain: A: PDB Molecule:trna cca-adding enzyme;
PDBTitle: crystal structure of human cca-adding enzyme
24c3wfsC_



not modelled 91.1 18
PDB header:transferase/rna
Chain: C: PDB Molecule:poly a polymerase;
PDBTitle: trna processing enzyme complex 3
25c3wfqE_



not modelled 90.7 18
PDB header:transferase/rna
Chain: E: PDB Molecule:poly a polymerase;
PDBTitle: trna processing enzyme complex 1
26c3wfqH_



not modelled 90.6 18
PDB header:transferase/rna
Chain: H: PDB Molecule:poly a polymerase;
PDBTitle: trna processing enzyme complex 1
27c1sz1A_



not modelled 89.9 16
PDB header:transferase/rna
Chain: A: PDB Molecule:trna nucleotidyltransferase;
PDBTitle: mechanism of cca-adding enzymes specificity revealed by crystal2 structures of ternary complexes
28c3wfpB_



not modelled 86.0 18
PDB header:transferase
Chain: B: PDB Molecule:poly a polymerase;
PDBTitle: trna processing enzyme (apo form 2)
29c6e0kA_



not modelled 86.0 20
PDB header:transferase
Chain: A: PDB Molecule:cgas/dncv-like nucleotidyltransferase in e. coli homolog;
PDBTitle: structure of rhodothermus marinus cdne c-ump-amp synthase
30c4xq7A_



not modelled 74.6 29
PDB header:transferase
Chain: A: PDB Molecule:2'-5'-oligoadenylate synthase-like protein;
PDBTitle: the crystal structure of the oas-like domain (old) of human oasl
31d1no5a_



not modelled 64.1 19
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Catalytic subunit of bi-partite nucleotidyltransferase
32c3somO_



not modelled 44.8 28
PDB header:oxidoreductase
Chain: O: PDB Molecule:methylmalonic aciduria and homocystinuria type c protein;
PDBTitle: crystal structure of human mmachc
33c1iv8A_



not modelled 43.5 24
PDB header:isomerase
Chain: A: PDB Molecule:maltooligosyl trehalose synthase;
PDBTitle: crystal structure of maltooligosyl trehalose synthase
34c6e0oA_



not modelled 42.8 20
PDB header:transferase/rna
Chain: A: PDB Molecule:cgas/dncv-like nucleotidyltransferase in e. coli homolog;
PDBTitle: structure of elizabethkingia meningoseptica cdne cyclic dinucleotide2 synthase with pppa[3'-5']pa
35d2q66a2



not modelled 41.6 12
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Poly(A) polymerase, PAP, N-terminal domain
36c3fpnB_



not modelled 36.9 8
PDB header:dna binding protein
Chain: B: PDB Molecule:geobacillus stearothermophilus uvrb interaction domain;
PDBTitle: crystal structure of uvra-uvrb interaction domains
37d1iv8a2



not modelled 35.9 23
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
38c4s3nA_



not modelled 35.8 12
PDB header:transferase/rna
Chain: A: PDB Molecule:2'-5'-oligoadenylate synthase 3;
PDBTitle: crystal structure of human oas3 domain i in complex with dsrna
39d2nrka1



not modelled 30.1 12
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:GrpB-like
40c3sc0A_



not modelled 27.0 30
PDB header:oxidoreductase
Chain: A: PDB Molecule:methylmalonic aciduria and homocystinuria type c protein;
PDBTitle: crystal structure of mmachc (1-238), a human b12 processing enzyme,2 complexed with methylcobalamin
41c4dfcC_



not modelled 26.2 18
PDB header:hydrolase/dna binding protein
Chain: C: PDB Molecule:transcription-repair-coupling factor;
PDBTitle: core uvra/trcf complex
42c5zcrB_



not modelled 25.7 20
PDB header:hydrolase
Chain: B: PDB Molecule:maltooligosyl trehalose synthase;
PDBTitle: dsm5389 glycosyltrehalose synthase
43c3hjeA_



not modelled 20.2 20
PDB header:transferase
Chain: A: PDB Molecule:704aa long hypothetical glycosyltransferase;
PDBTitle: crystal structure of sulfolobus tokodaii hypothetical maltooligosyl2 trehalose synthase
44c3c66B_



not modelled 15.2 14
PDB header:transferase
Chain: B: PDB Molecule:poly(a) polymerase;
PDBTitle: yeast poly(a) polymerase in complex with fip1 residues 80-105
45c5n7sA_



not modelled 13.4 15
PDB header:transport protein
Chain: A: PDB Molecule:type ii secretion system protein l;
PDBTitle: crystal structure of the periplasmic domain of xcpy, op crystal form.
46d2vana2



not modelled 12.5 14
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:DNA polymerase beta-like
47d1t5la1



not modelled 11.7 8
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
48c4nj7P_



not modelled 11.6 10
PDB header:protein binding
Chain: P: PDB Molecule:auxin response factor 7;
PDBTitle: pb1 domain of atarf7 - semet derivative
49c1q78A_



not modelled 11.2 14
PDB header:transferase
Chain: A: PDB Molecule:poly(a) polymerase alpha;
PDBTitle: crystal structure of poly(a) polymerase in complex with 3'-2 datp and magnesium chloride
50d1ylqa1



not modelled 11.0 20
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Catalytic subunit of bi-partite nucleotidyltransferase
51c4ui9M_



not modelled 9.7 20
PDB header:cell cycle
Chain: M: PDB Molecule:anaphase-promoting complex subunit 13;
PDBTitle: atomic structure of the human anaphase-promoting complex
52d2fmpa3



not modelled 8.3 11
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:DNA polymerase beta-like
53c3hjhA_



not modelled 8.2 17
PDB header:hydrolase
Chain: A: PDB Molecule:transcription-repair-coupling factor;
PDBTitle: a rigid n-terminal clamp restrains the motor domains of the bacterial2 transcription-repair coupling factor
54d2eyqa4



not modelled 7.8 17
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
55d1q79a2



not modelled 7.6 14
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Poly(A) polymerase, PAP, N-terminal domain
56c2la3A_



not modelled 7.1 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: the nmr structure of the protein np_344798.1 reveals a cca-adding2 enzyme head domain
57d2b2na1



not modelled 6.6 17
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
58d1wota_



not modelled 6.6 11
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Catalytic subunit of bi-partite nucleotidyltransferase
59d1j5ya2



not modelled 6.2 14
Fold:HPr-like
Superfamily:Putative transcriptional regulator TM1602, C-terminal domain
Family:Putative transcriptional regulator TM1602, C-terminal domain
60c1px5A_



not modelled 6.2 27
PDB header:transferase
Chain: A: PDB Molecule:2'-5'-oligoadenylate synthetase 1;
PDBTitle: crystal structure of the 2'-specific and double-stranded2 rna-activated interferon-induced antiviral protein 2'-5'-3 oligoadenylate synthetase
61c3dnlB_



not modelled 6.1 29
PDB header:viral protein
Chain: B: PDB Molecule:hiv-1 envelope glycoprotein gp120;
PDBTitle: molecular structure for the hiv-1 gp120 trimer in the b12-bound state
62d1wmhb_



not modelled 5.6 22
Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:PB1 domain
63c4p4oA_



not modelled 5.6 11
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase beta;
PDBTitle: crystal structure of leishmania infantum polymerase beta: ternary gap2 complex
64c2qmhK_



not modelled 5.5 11
PDB header:transferase
Chain: K: PDB Molecule:hpr kinase/phosphorylase;
PDBTitle: structure of v267f mutant hprk/p
65d2bcqa3



not modelled 5.4 25
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:DNA polymerase beta-like
66c2bcuA_



not modelled 5.4 25
PDB header:transferase, lyase/dna
Chain: A: PDB Molecule:dna polymerase lambda;
PDBTitle: dna polymerase lambda in complex with a dna duplex2 containing an unpaired damp and a t:t mismatch
67d1fiua_



not modelled 5.4 12
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Restriction endonuclease NgoIV
68c5nv8A_



not modelled 5.3 26
PDB header:transferase
Chain: A: PDB Molecule:ef-p arginine 32 rhamnosyl-transferase;
PDBTitle: structural basis for earp-mediated arginine glycosylation of2 translation elongation factor ef-p

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