1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		V	T	R	D	P	H	S	P	D	C	G	R	E	G	S	Y	R	D	T	I	T	R	P	L	T	D	L	P	V	A	G	Y	P	L	V	P	R	V	A	S	P	R	Y	R	C	T	T	P	Q	C	G	R	A	V	F	N	Q	D	L	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?		?		?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Sequence		N	V	D	Q	Y	L	V	V	N	Q	L	A	H	Q	L	I	D	G	S	S	L	I	P	D	A	D	K	R	W	D	A	R	R	H	A	D	M	T	H	H	L	T	S	S	L	K	E	N	Q	S
Secondary structure
SS confidence
Disorder																						?					?	?		?	?	?	?	?	?													?	?	?	?
Disorder confidence

Confidence Key High(9)                     Low (0)

? Disordered ( 23%) Alpha helix ( 46%) Beta strand ( 22%)

Rank Aligned region

PDB 3gn5 chain B Region: 7 - 103 Aligned: 91 Modelled: 97 Confidence: 93.7% Identity: 13% PDB header:dna binding protein Chain: B: PDB Molecule:hth-type transcriptional regulator mqsa (ygit/b3021); PDBTitle: structure of the e. coli protein mqsa (ygit/b3021) Phyre2 PDB 2qkd chain A Region: 7 - 54 Aligned: 37 Modelled: 35 Confidence: 89.1% Identity: 19% PDB header:signaling protein, cell cycle Chain: A: PDB Molecule:zinc finger protein zpr1; PDBTitle: crystal structure of tandem zpr1 domains Phyre2 PDB 2hu9 chain B Region: 7 - 64 Aligned: 53 Modelled: 58 Confidence: 87.6% Identity: 19% PDB header:metal transport Chain: B: PDB Molecule:mercuric transport protein periplasmic component; PDBTitle: x-ray structure of the archaeoglobus fulgidus copz n-2 terminal domain Phyre2 PDB 1dgs chain A domain 1 Region: 5 - 51 Aligned: 25 Modelled: 25 Confidence: 87.1% Identity: 32% Fold: SAM domain-like Superfamily: RuvA domain 2-like Family: NAD+-dependent DNA ligase, domain 3 Phyre2 PDB 5fja chain I Region: 2 - 58 Aligned: 44 Modelled: 57 Confidence: 78.5% Identity: 32% PDB header:transcription Chain: I: PDB Molecule:dna-directed rna polymerase iii subunit rpc10; PDBTitle: cryo-em structure of yeast rna polymerase iii at 4.7 a Phyre2 PDB 1pvm chain A domain 3 Region: 6 - 51 Aligned: 31 Modelled: 46 Confidence: 76.7% Identity: 39% Fold: Rubredoxin-like Superfamily: Hypothetical protein Ta0289 C-terminal domain Family: Hypothetical protein Ta0289 C-terminal domain Phyre2 PDB 1dgs chain B Region: 5 - 51 Aligned: 25 Modelled: 25 Confidence: 74.7% Identity: 32% PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis Phyre2 PDB 2fiy chain A domain 1 Region: 3 - 51 Aligned: 42 Modelled: 49 Confidence: 73.3% Identity: 29% Fold: FdhE-like Superfamily: FdhE-like Family: FdhE-like Phyre2 PDB 1v9p chain B Region: 5 - 51 Aligned: 25 Modelled: 25 Confidence: 69.3% Identity: 32% PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase Phyre2 PDB 5flm chain I Region: 2 - 57 Aligned: 45 Modelled: 46 Confidence: 65.7% Identity: 24% PDB header:transcription Chain: I: PDB Molecule:dna-directed rna polymerase ii subunit rpb9; PDBTitle: structure of transcribing mammalian rna polymerase ii Phyre2 PDB 1x3z chain A domain 1 Region: 4 - 54 Aligned: 43 Modelled: 40 Confidence: 64.0% Identity: 16% Fold: Cysteine proteinases Superfamily: Cysteine proteinases Family: Transglutaminase core Phyre2 PDB 3flo chain D Region: 7 - 76 Aligned: 45 Modelled: 56 Confidence: 59.5% Identity: 18% PDB header:transferase Chain: D: PDB Molecule:dna polymerase alpha catalytic subunit a; PDBTitle: crystal structure of the carboxyl-terminal domain of yeast dna2 polymerase alpha in complex with its b subunit Phyre2 PDB 1k78 chain A domain 1 Region: 68 - 109 Aligned: 41 Modelled: 42 Confidence: 58.0% Identity: 10% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Paired domain Phyre2 PDB 2owo chain A Region: 1 - 51 Aligned: 31 Modelled: 31 Confidence: 57.1% Identity: 32% PDB header:ligase/dna Chain: A: PDB Molecule:dna ligase; PDBTitle: last stop on the road to repair: structure of e.coli dna ligase bound2 to nicked dna-adenylate Phyre2 PDB 4qiw chain P Region: 2 - 19 Aligned: 18 Modelled: 18 Confidence: 54.0% Identity: 28% PDB header:transcription Chain: P: PDB Molecule:dna-directed rna polymerase subunit p; PDBTitle: crystal structure of euryarchaeal rna polymerase from thermococcus2 kodakarensis Phyre2 PDB 4glx chain A Region: 5 - 51 Aligned: 27 Modelled: 27 Confidence: 53.0% Identity: 37% PDB header:ligase/ligase inhibitor/dna Chain: A: PDB Molecule:dna ligase; PDBTitle: dna ligase a in complex with inhibitor Phyre2 PDB 1qpz chain A domain 1 Region: 85 - 107 Aligned: 23 Modelled: 23 Confidence: 52.0% Identity: 17% Fold: lambda repressor-like DNA-binding domains Superfamily: lambda repressor-like DNA-binding domains Family: GalR/LacI-like bacterial regulator Phyre2 PDB 1qyp chain A Region: 7 - 57 Aligned: 38 Modelled: 51 Confidence: 51.0% Identity: 29% Fold: Rubredoxin-like Superfamily: Zinc beta-ribbon Family: Transcriptional factor domain Phyre2 PDB 2dk5 chain A domain 1 Region: 70 - 110 Aligned: 38 Modelled: 41 Confidence: 50.9% Identity: 18% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: RPO3F domain-like Phyre2 PDB 1twf chain I domain 2 Region: 1 - 65 Aligned: 53 Modelled: 65 Confidence: 50.5% Identity: 13% Fold: Rubredoxin-like Superfamily: Zinc beta-ribbon Family: Transcriptional factor domain Phyre2 1 c3gn5B_ 2 c2qkdA_ 3 c2hu9B_ 4 d1dgsa1 5 c5fjaI_ 6 d1pvma3 7 c1dgsB_ 8 d2fiya1 9 c1v9pB_ 10 c5flmI_ 11 d1x3za1 12 c3floD_ 13 d1k78a1 14 c2owoA_ 15 c4qiwP_ 16 c4glxA_ 17 d1qpza1 18 d1qypa_ 19 d2dk5a1 20 d1twfi2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125