Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0852_(fadD16)_948562_949398
DateFri Jul 26 01:50:44 BST 2019
Unique Job IDdfe79a912dc9efbf
SequenceVFTIGYSCAS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:39.125 Y:35.083 Z:24.857
Model (left) based on template c3kngA_
Top template information
PDB header:oxidoreductase
Chain: A: PDB Molecule:snoab;
PDBTitle: crystal structure of snoab, a cofactor-independent oxygenase2 from streptomyces nogalater, determined to 1.9 resolution
Confidence and coverage
Confidence: 72.3% Coverage: 26%
72 residues ( 26% of your sequence) have been modelled with 72.3% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3kngA_
72.3 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:snoab;
PDBTitle: crystal structure of snoab, a cofactor-independent oxygenase2 from streptomyces nogalater, determined to 1.9 resolution
2c3tsyA_
72.1 53
PDB header:ligase, transferase
Chain: A: PDB Molecule:fusion protein 4-coumarate--coa ligase 1, resveratrol
PDBTitle: 4-coumaroyl-coa ligase::stilbene synthase fusion protein
3c3qyaA_
67.4 30
PDB header:oxidoreductase
Chain: A: PDB Molecule:luciferase;
PDBTitle: crystal structure of a red-emitter mutant of lampyris turkestanicus2 luciferase
4c3o82A_
64.5 22
PDB header:ligase
Chain: A: PDB Molecule:peptide arylation enzyme;
PDBTitle: structure of base n-terminal domain from acinetobacter baumannii bound2 to 5'-o-[n-(2,3-dihydroxybenzoyl)sulfamoyl] adenosine
5c4dpoA_
63.0 17
PDB header:unknown function
Chain: A: PDB Molecule:conserved protein;
PDBTitle: crystal structure of a conserved protein mm_1583 from methanosarcina2 mazei go1
6c3o82B_
62.1 22
PDB header:ligase
Chain: B: PDB Molecule:peptide arylation enzyme;
PDBTitle: structure of base n-terminal domain from acinetobacter baumannii bound2 to 5'-o-[n-(2,3-dihydroxybenzoyl)sulfamoyl] adenosine
7c5mssA_
59.4 34
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioester reductase domain-containing protein;
PDBTitle: structure of the a-pcp didomain of carboxylic acid reductase (car)2 from segniliparus rugosus in complex with amp
8c5mstA_
56.7 34
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioester reductase domain-containing protein;
PDBTitle: structure of the a domain of carboxylic acid reductase (car) from2 segniliparus rugosus in complex with amp and a co-purified carboxylic3 acid
9d2omoa1
52.0 15
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:PA3566-like
10c3hx9B_
46.8 12
PDB header:oxidoreductase
Chain: B: PDB Molecule:protein rv3592;
PDBTitle: structure of heme-degrader, mhud (rv3592), from2 mycobacterium tuberculosis with two hemes bound in its3 active site
11c2omoC_
46.5 14
PDB header:oxidoreductase
Chain: C: PDB Molecule:duf176;
PDBTitle: putative antibiotic biosynthesis monooxygenase from nitrosomonas2 europaea
12c5n81B_
44.8 28
PDB header:ligase
Chain: B: PDB Molecule:tyrocidine synthase 1;
PDBTitle: crystal structure of an engineered tyca variant in complex with an o-2 propargyl-beta-tyr-amp analog
13c5msdA_
44.2 34
PDB header:oxidoreductase
Chain: A: PDB Molecule:carboxylic acid reductase;
PDBTitle: structure of the a domain of carboxylic acid reductase (car) from2 nocardia iowensis in complex with amp and benzoic acid
14d1iuja_
40.3 13
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:PG130-like
15c4zosA_
40.2 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein ye0340 from yersinia enterocolitica subsp.
PDBTitle: 2.20 angstrom resolution crystal structure of protein ye0340 of2 unidentified function from yersinia enterocolitica subsp.3 enterocolitica 8081]
16c3ivrA_
39.6 39
PDB header:ligase
Chain: A: PDB Molecule:putative long-chain-fatty-acid coa ligase;
PDBTitle: crystal structure of putative long-chain-fatty-acid coa ligase from2 rhodopseudomonas palustris cga009
17d1v25a_
39.5 27
Fold:Acetyl-CoA synthetase-like
Superfamily:Acetyl-CoA synthetase-like
Family:Acetyl-CoA synthetase-like
18c2gffB_
39.3 5
PDB header:sugar binding protein
Chain: B: PDB Molecule:lsrg protein;
PDBTitle: crystal structure of yersinia pestis lsrg
19c3l6gA_
39.0 33
PDB header:glycine betaine-binding protein
Chain: A: PDB Molecule:betaine abc transporter permease and substrate binding
PDBTitle: crystal structure of lactococcal opuac in its open conformation
20c3t5cA_
36.4 39
PDB header:ligase
Chain: A: PDB Molecule:probable chain-fatty-acid-coa ligase fadd13;
PDBTitle: crystal structure of n-terminal domain of facl13 from mycobacterium2 tuberculosis in different space group c2
21c3tmgA_
not modelled 34.4 14
PDB header:transport protein
Chain: A: PDB Molecule:glycine betaine, l-proline abc transporter,
PDBTitle: crystal structure of glycine betaine, l-proline abc transporter,2 glycine/betaine/l-proline-binding protein (prox) from borrelia3 burgdorferi
22c5oe3C_
not modelled 33.8 26
PDB header:ligase
Chain: C: PDB Molecule:anthranilate--coa ligase;
PDBTitle: crystal structure of the n-terminal domain of pqsa in complex with2 anthraniloyl-amp (crystal form 1)
23c2bbeA_
not modelled 33.3 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein so0527;
PDBTitle: crystal structure of protein so0527 from shewanella oneidensis
24c4ae5C_
not modelled 30.9 15
PDB header:signaling protein
Chain: C: PDB Molecule:signal transduction protein trap;
PDBTitle: structure of a major regulator of staphylococcal pathogenesis
25c3e53A_
not modelled 30.9 22
PDB header:ligase
Chain: A: PDB Molecule:fatty-acid-coa ligase fadd28;
PDBTitle: crystal structure of n-terminal domain of a fatty acyl amp2 ligase faal28 from mycobacterium tuberculosis
26d1x7va_
not modelled 29.9 14
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:PA3566-like
27c5jjpB_
not modelled 29.5 38
PDB header:ligase
Chain: B: PDB Molecule:nonribosomal peptide synthase;
PDBTitle: crystal structure of cmis6
28c2rejA_
not modelled 29.2 33
PDB header:choline-binding protein
Chain: A: PDB Molecule:putative glycine betaine abc transporter protein;
PDBTitle: abc-transporter choline binding protein in unliganded semi-2 closed conformation
29c2fb0A_
not modelled 28.7 10
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein;
PDBTitle: crystal structure of conserved protein of unknown function from2 bacteroides thetaiotaomicron vpi-5482 at 2.10 a resolution, possible3 oxidoreductase
30c4w8oA_
not modelled 27.8 27
PDB header:oxidoreductase
Chain: A: PDB Molecule:luciferase-like enzymeamp-coa-ligase;
PDBTitle: structure of the luciferase-like enzyme from the nonluminescent2 zophobas morio mealworm
31c6fxfA_
not modelled 26.8 14
PDB header:signaling protein
Chain: A: PDB Molecule:sam and sh3 domain-containing protein 3;
PDBTitle: crystal structure of the sam domain of murine sly1
32c5burB_
not modelled 26.6 23
PDB header:ligase
Chain: B: PDB Molecule:2-succinylbenzoate--coa ligase;
PDBTitle: o-succinylbenzoate coenzyme a synthetase (mene) from bacillus2 subtilis, in complex with atp and magnesium ion
33c3bm7A_
not modelled 25.8 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:protein of unknown function with ferredoxin-like fold;
PDBTitle: crystal structure of a putative antibiotic biosynthesis monooxygenase2 (cc_2132) from caulobacter crescentus cb15 at 1.35 a resolution
34c6gw6B_
not modelled 25.6 24
PDB header:toxin
Chain: B: PDB Molecule:xre antitoxin;
PDBTitle: structure of the pseudomonas putida res-xre toxin-antitoxin complex
35c2lmrA_
not modelled 24.6 19
PDB header:signaling protein
Chain: A: PDB Molecule:ankyrin repeat and sam domain-containing protein 1a;
PDBTitle: solution structure of the first sam domain of odin
36c2yqpA_
not modelled 24.4 33
PDB header:gene regulation, hydrolase
Chain: A: PDB Molecule:probable atp-dependent rna helicase ddx59;
PDBTitle: solution structure of the zf-hit domain in dead (asp-glu-2 ala-asp) box polypeptide 59
37c3fgvB_
not modelled 23.5 7
PDB header:oxidoreductase
Chain: B: PDB Molecule:uncharacterized protein with ferredoxin-like fold;
PDBTitle: crystal structure of a putative antibiotic biosynthesis monooxygenase2 (spo2313) from silicibacter pomeroyi dss-3 at 1.30 a resolution
38c2zdiC_
not modelled 22.8 28
PDB header:chaperone
Chain: C: PDB Molecule:prefoldin subunit alpha;
PDBTitle: crystal structure of prefoldin from pyrococcus horikoshii2 ot3
39c3gz7B_
not modelled 22.7 12
PDB header:biosynthetic protein
Chain: B: PDB Molecule:putative antibiotic biosynthesis monooxygenase;
PDBTitle: crystal structure of putative antibiotic biosynthesis monooxygenase2 (np_888398.1) from bordetella bronchiseptica at 2.15 a resolution
40c5zrzB_
not modelled 21.8 24
PDB header:protein binding
Chain: B: PDB Molecule:sterile alpha motif domain-containing protein 5;
PDBTitle: crystal structure of epha5/samd5 complex
41c5jjpC_
not modelled 21.5 38
PDB header:ligase
Chain: C: PDB Molecule:nonribosomal peptide synthase;
PDBTitle: crystal structure of cmis6
42c6d0hB_
not modelled 21.5 24
PDB header:toxin
Chain: B: PDB Molecule:pars: cog5642 (duf2384) antitoxin;
PDBTitle: part: prs adp-ribosylating toxin bound to cognate antitoxin pars
43c3k1rB_
not modelled 21.4 5
PDB header:structural protein
Chain: B: PDB Molecule:usher syndrome type-1g protein;
PDBTitle: structure of harmonin npdz1 in complex with the sam-pbm of2 sans
44c3lo3E_
not modelled 21.4 10
PDB header:structure genomics, unknown function
Chain: E: PDB Molecule:uncharacterized conserved protein;
PDBTitle: the crystal structure of a conserved functionally unknown protein from2 colwellia psychrerythraea 34h.
45c2kg5A_
not modelled 20.8 22
PDB header:signaling protein
Chain: A: PDB Molecule:arf-gap, rho-gap domain, ank repeat and ph
PDBTitle: nmr solution structure of arap3-sam
46d1v38a_
not modelled 20.8 13
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
47c5jtiA_
not modelled 20.7 12
PDB header:signaling protein
Chain: A: PDB Molecule:tankyrase-1;
PDBTitle: crystal structure of the human tankyrase 1 (tnks) sam domain (d1055r),2 crystal form 2
48d1x8da1
not modelled 20.4 10
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:YiiL-like
49c1cqtI_
not modelled 19.8 69
PDB header:gene regulation/dna
Chain: I: PDB Molecule:pou domain, class 2, associating factor 1;
PDBTitle: crystal structure of a ternary complex containing an oca-b2 peptide, the oct-1 pou domain, and an octamer element
50c3h8mB_
not modelled 19.2 23
PDB header:transferase
Chain: B: PDB Molecule:ephrin type-a receptor 7;
PDBTitle: sam domain of human ephrin type-a receptor 7 (epha7)
51c4plaA_
not modelled 19.0 39
PDB header:transferase,hydrolase
Chain: A: PDB Molecule:chimera protein of phosphatidylinositol 4-kinase type 2-
PDBTitle: crystal structure of phosphatidyl inositol 4-kinase ii alpha in2 complex with atp
52c3e8oB_
not modelled 18.9 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:uncharacterized protein with ferredoxin-like fold;
PDBTitle: crystal structure of a putative antibiotic biosynthesis monooxygenase2 (dr_2100) from deinococcus radiodurans at 1.40 a resolution
53c2iutA_
not modelled 18.7 27
PDB header:membrane protein
Chain: A: PDB Molecule:dna translocase ftsk;
PDBTitle: p. aeruginosa ftsk motor domain, dimeric
54c2iuuE_
not modelled 18.7 27
PDB header:membrane protein
Chain: E: PDB Molecule:dna translocase ftsk;
PDBTitle: p. aeruginosa ftsk motor domain, hexamer
55d1ofcx2
not modelled 17.8 46
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:SLIDE domain
56c1cqtJ_
not modelled 17.8 69
PDB header:gene regulation/dna
Chain: J: PDB Molecule:pou domain, class 2, associating factor 1;
PDBTitle: crystal structure of a ternary complex containing an oca-b2 peptide, the oct-1 pou domain, and an octamer element
57c3eabK_
not modelled 17.6 73
PDB header:cell cycle
Chain: K: PDB Molecule:chmp1b;
PDBTitle: crystal structure of spastin mit in complex with escrt iii
58c4rqmC_
not modelled 17.3 35
PDB header:protein binding
Chain: C: PDB Molecule:protein bicaudal c homolog 1;
PDBTitle: crystal structure of the semet bicc1 sam domain r924e mutant
59d1r9la_
not modelled 17.2 24
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
60c2qkqA_
not modelled 17.0 29
PDB header:transferase
Chain: A: PDB Molecule:ephrin type-b receptor 4;
PDBTitle: structure of the sam domain of human ephrin type-b receptor2 4
61d1b4fa_
not modelled 16.9 23
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
62c3chgB_
not modelled 16.6 33
PDB header:ligand binding protein
Chain: B: PDB Molecule:glycine betaine-binding protein;
PDBTitle: the compatible solute-binding protein opuac from bacillus2 subtilis in complex with dmsa
63c2eseA_
not modelled 16.0 9
PDB header:protein/rna complex
Chain: A: PDB Molecule:vts1p;
PDBTitle: structure of the sam domain of vts1p in complex with rna
64c3tadB_
not modelled 15.9 24
PDB header:protein binding
Chain: B: PDB Molecule:liprin-alpha-2;
PDBTitle: crystal structure of the liprin-alpha/liprin-beta complex
65c5zrzA_
not modelled 15.6 29
PDB header:protein binding
Chain: A: PDB Molecule:ephrin type-a receptor 5;
PDBTitle: crystal structure of epha5/samd5 complex
66c4kf7A_
not modelled 15.6 55
PDB header:structural protein
Chain: A: PDB Molecule:nup188;
PDBTitle: nup188(aa1-1160) from myceliophthora thermophila
67c3rg2H_
not modelled 15.1 25
PDB header:ligase
Chain: H: PDB Molecule:enterobactin synthase component e (ente), 2,3-dihydro-2,3-
PDBTitle: structure of a two-domain nrps fusion protein containing the ente2 adenylation domain and entb aryl-carrier protein from enterobactin3 biosynthesis
68c4d56A_
not modelled 15.1 28
PDB header:hydrolase
Chain: A: PDB Molecule:apnaa1;
PDBTitle: understanding bi-specificity of a-domains
69d1hcfa_
not modelled 15.0 33
Fold:Cystine-knot cytokines
Superfamily:Cystine-knot cytokines
Family:Neurotrophin
70c4n1aE_
not modelled 15.0 18
PDB header:protein binding/protein binding
Chain: E: PDB Molecule:cell divisionftsk/spoiiie;
PDBTitle: thermomonospora curvata eccc (atpases 2 and 3) in complex with a2 signal sequence peptide
71c2ke7A_
not modelled 14.8 18
PDB header:protein binding
Chain: A: PDB Molecule:ankyrin repeat and sterile alpha motif domain-
PDBTitle: nmr structure of the first sam domain from aida1
72c5td8A_
not modelled 14.8 33
PDB header:replication
Chain: A: PDB Molecule:kinetochore protein ndc80;
PDBTitle: crystal structure of an extended dwarf ndc80 complex
73c5ey8D_
not modelled 14.8 38
PDB header:ligase
Chain: D: PDB Molecule:acyl-coa synthase;
PDBTitle: structure of fadd32 from mycobacterium smegmatis complexed to ampc20
74d1bh9b_
not modelled 14.5 56
Fold:Histone-fold
Superfamily:Histone-fold
Family:TBP-associated factors, TAFs
75c3kkaD_
not modelled 14.5 24
PDB header:transferase
Chain: D: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: co-crystal structure of the sam domains of epha1 and epha2
76c3senD_
not modelled 14.2 32
PDB header:signaling protein
Chain: D: PDB Molecule:caskin-1;
PDBTitle: structure of caskin1 tandem sams
77c2affB_
not modelled 14.2 38
PDB header:cell cycle
Chain: B: PDB Molecule:mki67 fha domain interacting nucleolar phosphoprotein;
PDBTitle: the solution structure of the ki67fha/hnifk(226-269)3p complex
78c2h1iA_
not modelled 14.2 21
PDB header:hydrolase
Chain: A: PDB Molecule:carboxylesterase;
PDBTitle: crystal structure of the bacillus cereus carboxylesterase
79d1b8mb_
not modelled 14.0 33
Fold:Cystine-knot cytokines
Superfamily:Cystine-knot cytokines
Family:Neurotrophin
80d1ow5a_
not modelled 13.6 18
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
81c1ow5A_
not modelled 13.6 18
PDB header:transferase
Chain: A: PDB Molecule:serine/threonine-protein kinase ste11;
PDBTitle: nmr structure of the saccharomyces cerevisiae sam (sterile2 alpha motif) domain
82d1sgga_
not modelled 13.6 20
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
83c4dn9B_
not modelled 13.0 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:antibiotic biosynthesis monooxygenase;
PDBTitle: crystal structure of putative antibiotic biosynthesis monooxygenase2 from chloroflexus aurantiacus j-10-fl
84c4is7A_
not modelled 12.9 26
PDB header:protein binding
Chain: A: PDB Molecule:caskin-2;
PDBTitle: crystal structure of the caskin2 sam domain tandem
85c4gr5B_
not modelled 12.7 22
PDB header:ligase
Chain: B: PDB Molecule:non-ribosomal peptide synthetase;
PDBTitle: crystal structure of slgn1deltaasub in complex with ampcpp
86d1ucva_
not modelled 12.6 24
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
87c5f3xB_
not modelled 12.4 13
PDB header:structural protein/protein binding
Chain: B: PDB Molecule:ankyrin repeat and sam domain-containing protein 4b;
PDBTitle: crystal structure of harmonin npdz1 in complex with anks4b sam-pbm
88c2eamA_
not modelled 12.3 18
PDB header:signaling protein
Chain: A: PDB Molecule:putative 47 kda protein;
PDBTitle: solution structure of the n-terminal sam-domain of a human2 putative 47 kda protein
89d1b0xa_
not modelled 12.2 19
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
90c1b0xA_
not modelled 12.2 19
PDB header:transferase
Chain: A: PDB Molecule:protein (epha4 receptor tyrosine kinase);
PDBTitle: the crystal structure of an eph receptor sam domain reveals2 a mechanism for modular dimerization.
91d3b5ea1
not modelled 12.1 24
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Carboxylesterase/thioesterase 1
92c1gph1_
not modelled 11.7 25
PDB header:transferase
Chain: 1: PDB Molecule:glutamine phosphoribosyl-pyrophosphate amidotransferase;
PDBTitle: structure of the allosteric regulatory enzyme of purine biosynthesis
93c3o0lB_
not modelled 11.6 40
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a pfam duf1425 family member (shew_1734) from2 shewanella sp. pv-4 at 1.81 a resolution
94d2zdpa1
not modelled 11.2 22
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:PG130-like
95c4gioA_
not modelled 11.1 40
PDB header:unknown function
Chain: A: PDB Molecule:putative lipoprotein;
PDBTitle: crystal structure of campylobacter jejuni cj0090
96c2m3dA_
not modelled 11.1 15
PDB header:hydrolase
Chain: A: PDB Molecule:nucleolar rna helicase 2;
PDBTitle: nmr structure of the guct domain from human dead box polypeptide 21
97d2ooka1
not modelled 11.1 31
Fold:SpoIIaa-like
Superfamily:SpoIIaa-like
Family:Sfri0576-like
98c3da5A_
not modelled 10.7 46
PDB header:rna binding protein
Chain: A: PDB Molecule:argonaute;
PDBTitle: crystal structure of piwi/argonaute/zwille(paz) domain from2 thermococcus thioreducens
99d1ycqa_
not modelled 10.6 31
Fold:SWIB/MDM2 domain
Superfamily:SWIB/MDM2 domain
Family:SWIB/MDM2 domain

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