Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0862c_(-)_960345_962615
DateFri Jul 26 01:50:45 BST 2019
Unique Job ID887956da345ffac0
SequenceMTEHTPDIPL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:42.971 Y:59.587 Z:30.303
Model (left) based on template c6nmiA_
Top template information
PDB header:transcription
Chain: A: PDB Molecule:general transcription and dna repair factor iih helicase
PDBTitle: cryo-em structure of the human tfiih core complex
Confidence and coverage
Confidence: 98.7% Coverage: 20%
150 residues ( 20% of your sequence) have been modelled with 98.7% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6nmiA_
98.7 21
PDB header:transcription
Chain: A: PDB Molecule:general transcription and dna repair factor iih helicase
PDBTitle: cryo-em structure of the human tfiih core complex
2c6nmiD_
97.6 19
PDB header:transcription
Chain: D: PDB Molecule:general transcription factor iih subunit 4, p52;
PDBTitle: cryo-em structure of the human tfiih core complex
3c6ro4A_
97.2 20
PDB header:translocase
Chain: A: PDB Molecule:general transcription and dna repair factor iih helicase
PDBTitle: structure of the core tfiih-xpa-dna complex
4c3fryB_
55.6 16
PDB header:hydrolase
Chain: B: PDB Molecule:probable copper-exporting p-type atpase a;
PDBTitle: crystal structure of the copa c-terminal metal binding domain
5c4g9qA_
42.5 12
PDB header:lyase
Chain: A: PDB Molecule:4-carboxymuconolactone decarboxylase;
PDBTitle: crystal structure of a 4-carboxymuconolactone decarboxylase
6c3pl5A_
40.4 26
PDB header:lipid binding protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: fatty acid binding protein
7d1pzxa_
39.6 18
Fold:DAK1/DegV-like
Superfamily:DAK1/DegV-like
Family:DegV-like
8d2ga1a1
37.7 9
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Alr1493-like
9c2r8rB_
36.0 24
PDB header:transferase
Chain: B: PDB Molecule:sensor protein;
PDBTitle: crystal structure of the n-terminal region (19..243) of sensor protein2 kdpd from pseudomonas syringae pv. tomato str. dc3000
10c6cngA_
34.0 23
PDB header:transferase
Chain: A: PDB Molecule:fatty acid kinase (fak) b3 protein;
PDBTitle: the x-ray crystal structure of the streptococcus pneumoniae fatty acid2 kinase (fak) b3 protein loaded with linoleic acid to 1.47 angstrom3 resolution
11d2q0ta1
31.3 24
Fold:AhpD-like
Superfamily:AhpD-like
Family:AhpD
12d2af7a1
31.1 24
Fold:AhpD-like
Superfamily:AhpD-like
Family:CMD-like
13c2g7zB_
31.0 11
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:conserved hypothetical protein spy1493;
PDBTitle: conserved degv-like protein of unknown function from streptococcus2 pyogenes m1 gas binds long-chain fatty acids
14c4a6dA_
27.8 12
PDB header:transferase
Chain: A: PDB Molecule:hydroxyindole o-methyltransferase;
PDBTitle: crystal structure of human n-acetylserotonin2 methyltransferase (asmt) in complex with sam
15c6dj6B_
27.2 11
PDB header:transferase
Chain: B: PDB Molecule:fatty acid kinase (fak) b2 protein (spr1019);
PDBTitle: the x-ray crystal structure of the streptococcus pneumoniae fatty acid2 kinase (fak) b2 protein loaded with cis-oleic acid to 1.9 angstrom3 resolution
16c5utoB_
25.3 13
PDB header:transport protein
Chain: B: PDB Molecule:edd domain protein, degv family;
PDBTitle: the crystal structure of the staphylococcus aureus fatty acid kinase2 (fak) b1 protein loaded with palmitic acid to 1.83 angstrom3 resolution
17c1zhvA_
24.1 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein atu0741;
PDBTitle: x-ray crystal structure protein atu0741 from agobacterium tumefaciens.2 northeast structural genomics consortium target atr8.
18d2p0la1
22.9 14
Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:LplA-like
19d3bz6a2
22.4 23
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:PSPTO2686-like
20d1mgpa_
21.7 20
Fold:DAK1/DegV-like
Superfamily:DAK1/DegV-like
Family:DegV-like
21c1mgpA_
not modelled 21.7 20
PDB header:lipid binding protein
Chain: A: PDB Molecule:hypothetical protein tm841;
PDBTitle: hypothetical protein tm841 from thermotoga maritima reveals2 fatty acid binding function
22c2dt8A_
not modelled 21.0 14
PDB header:lipid binding protein
Chain: A: PDB Molecule:degv family protein;
PDBTitle: fatty acid binding of a degv family protein from thermus thermophilus
23c5tmxA_
not modelled 20.4 13
PDB header:transcription regulator
Chain: A: PDB Molecule:protein sini;
PDBTitle: solution structure of sini, antagonist to the master biofilm-regulator2 sinr in bacillus subtilis
24c3lstB_
not modelled 19.3 20
PDB header:transferase
Chain: B: PDB Molecule:calo1 methyltransferase;
PDBTitle: crystal structure of calo1, methyltransferase in calicheamicin2 biosynthesis, sah bound form
25c3nyiA_
not modelled 19.0 17
PDB header:lipid binding protein
Chain: A: PDB Molecule:fat acid-binding protein;
PDBTitle: the crystal structure of a fat acid (stearic acid)-binding protein2 from eubacterium ventriosum atcc 27560.
26c3iuoA_
not modelled 18.7 18
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent dna helicase recq;
PDBTitle: the crystal structure of the c-terminal domain of the atp-dependent2 dna helicase recq from porphyromonas gingivalis to 1.6a
27c2xvcA_
not modelled 18.1 27
PDB header:cell cycle
Chain: A: PDB Molecule:escrt-iii;
PDBTitle: molecular and structural basis of escrt-iii recruitment to membranes2 during archaeal cell division
28c3fdjA_
not modelled 17.7 11
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:degv family protein;
PDBTitle: the structure of a degv family protein from eubacterium eligens.
29c3bz6A_
not modelled 17.2 23
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0502 protein pspto_2686;
PDBTitle: crystal structure of a conserved protein of unknown function from2 pseudomonas syringae pv. tomato str. dc3000
30c2k2pA_
not modelled 17.0 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein atu1203;
PDBTitle: solution nmr structure of protein atu1203 from agrobacterium2 tumefaciens. northeast structural genomics consortium (nesg) target3 att10, ontario center for structural proteomics target atc1183
31c2va0E_
not modelled 16.7 35
PDB header:transferase
Chain: E: PDB Molecule:abfs arabinofuranosidase two component system sensor
PDBTitle: differential regulation of the xylan degrading apparatus of2 cellvibrio japonicus by a novel two component system
32d1rj9a1
not modelled 16.5 38
Fold:Four-helical up-and-down bundle
Superfamily:Domain of the SRP/SRP receptor G-proteins
Family:Domain of the SRP/SRP receptor G-proteins
33c4x9xA_
not modelled 16.4 17
PDB header:transferase
Chain: A: PDB Molecule:degv domain-containing protein mw1315;
PDBTitle: biochemical roles for conserved residues in the bacterial fatty acid2 binding protein family
34d1zhva2
not modelled 15.7 19
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:Atu0741-like
35c2hcnA_
not modelled 15.6 30
PDB header:transferase
Chain: A: PDB Molecule:rna-directed rna polymerase (ns5);
PDBTitle: crystal structure of rna dependent rna polymerase domain from west2 nile virus
36c3dp7B_
not modelled 15.6 13
PDB header:transferase
Chain: B: PDB Molecule:sam-dependent methyltransferase;
PDBTitle: crystal structure of sam-dependent methyltransferase from bacteroides2 vulgatus atcc 8482
37d1wmhb_
not modelled 14.7 29
Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:PB1 domain
38c3pzfA_
not modelled 14.4 16
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:serpin 2;
PDBTitle: 1.75a resolution structure of serpin-2 from anopheles gambiae
39d1b0na1
not modelled 14.4 33
Fold:Dimerisation interlock
Superfamily:SinR repressor dimerisation domain-like
Family:SinR repressor dimerisation domain-like
40c3oq9C_
not modelled 14.3 22
PDB header:apoptosis
Chain: C: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: structure of the fas/fadd death domain assembly
41d2p5ia1
not modelled 13.2 23
Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:LplA-like
42c4gysA_
not modelled 12.5 22
PDB header:hydrolase
Chain: A: PDB Molecule:allophanate hydrolase;
PDBTitle: granulibacter bethesdensis allophanate hydrolase co-crystallized with2 malonate
43c3wvqA_
not modelled 12.4 16
PDB header:biosynthetic protein
Chain: A: PDB Molecule:pgm1;
PDBTitle: structure of atp grasp protein
44d2ikba1
not modelled 12.3 11
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:NMB1012-like
45c3jr7A_
not modelled 11.9 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized egv family protein cog1307;
PDBTitle: the crystal structure of the protein of degv family cog1307 with2 unknown function from ruminococcus gnavus atcc 29149
46d1jg5a_
not modelled 11.5 23
Fold:GTP cyclohydrolase I feedback regulatory protein, GFRP
Superfamily:GTP cyclohydrolase I feedback regulatory protein, GFRP
Family:GTP cyclohydrolase I feedback regulatory protein, GFRP
47c2hl7A_
not modelled 11.2 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c-type biogenesis protein ccmh;
PDBTitle: crystal structure of the periplasmic domain of ccmh from pseudomonas2 aeruginosa
48c1y3kA_
not modelled 11.0 19
PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting atpase 1;
PDBTitle: solution structure of the apo form of the fifth domain of2 menkes protein
49c6dkeA_
not modelled 10.9 17
PDB header:transferase
Chain: A: PDB Molecule:fatty acid kinase (fak) b1 protein;
PDBTitle: the x-ray crystal structure of streptococcus pneumoniae fatty acid2 kinase (fak) b1 protein loaded with palmitic acid (c16:0) to 1.763 angstrom resolution
50c1dmlF_
not modelled 10.9 35
PDB header:dna binding protein/transferase
Chain: F: PDB Molecule:dna polymerase;
PDBTitle: crystal structure of herpes simplex ul42 bound to the c-terminus of2 hsv pol
51c1dmlH_
not modelled 10.9 35
PDB header:dna binding protein/transferase
Chain: H: PDB Molecule:dna polymerase;
PDBTitle: crystal structure of herpes simplex ul42 bound to the c-terminus of2 hsv pol
52c1dmlD_
not modelled 10.9 35
PDB header:dna binding protein/transferase
Chain: D: PDB Molecule:dna polymerase;
PDBTitle: crystal structure of herpes simplex ul42 bound to the c-terminus of2 hsv pol
53c1dmlB_
not modelled 10.9 35
PDB header:dna binding protein/transferase
Chain: B: PDB Molecule:dna polymerase;
PDBTitle: crystal structure of herpes simplex ul42 bound to the c-terminus of2 hsv pol
54d1m6ya1
not modelled 10.8 19
Fold:SAM domain-like
Superfamily:Putative methyltransferase TM0872, insert domain
Family:Putative methyltransferase TM0872, insert domain
55c5tn2B_
not modelled 10.7 33
PDB header:transcription
Chain: B: PDB Molecule:hth-type transcriptional regulator sinr;
PDBTitle: solution structure of the c-terminal multimerization domain of the2 master biofilm-regulator sinr from bacillus subtilis
56d1qzza1
not modelled 10.3 24
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Plant O-methyltransferase, N-terminal domain
57d1z0xa2
not modelled 10.3 40
Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
58c3lupA_
not modelled 10.2 14
PDB header:structure genomics, unknown function
Chain: A: PDB Molecule:degv family protein;
PDBTitle: crystal structure of fatty acid binding degv family protein sag13422 from streptococcus agalactiae
59c2ygwB_
not modelled 10.0 35
PDB header:lyase
Chain: B: PDB Molecule:malonyl-coa decarboxylase, mitochondrial;
PDBTitle: crystal structure of human mcd
60c2kw0A_
not modelled 9.9 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:ccmh protein;
PDBTitle: solution structure of n-terminal domain of ccmh from escherichia.coli
61c2zc3F_
not modelled 9.8 11
PDB header:biosynthetic protein
Chain: F: PDB Molecule:penicillin-binding protein 2x;
PDBTitle: penicillin-binding protein 2x (pbp 2x) acyl-enzyme complex2 (biapenem) from streptococcus pneumoniae
62d1s6ua_
not modelled 9.7 15
Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
63c3ghfA_
not modelled 9.6 22
PDB header:cell cycle
Chain: A: PDB Molecule:septum site-determining protein minc;
PDBTitle: crystal structure of the septum site-determining protein minc from2 salmonella typhimurium
64d1kvja_
not modelled 9.4 8
Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
65c5u8jA_
not modelled 8.9 21
PDB header:unknown function
Chain: A: PDB Molecule:upf0502 protein bfj73_07745;
PDBTitle: crystal structure of a protein of unknown function ecl_02571 involved2 in membrane biogenesis from enterobacter cloacae
66d1pyya1
not modelled 8.9 11
Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
67c4qvgC_
not modelled 8.7 14
PDB header:transferase
Chain: C: PDB Molecule:sibl;
PDBTitle: crystal structure of s-adenosylmethionine-dependent methyltransferase2 sibl in its apo form
68d1ddfa_
not modelled 8.7 15
Fold:DEATH domain
Superfamily:DEATH domain
Family:DEATH domain, DD
69c3o59X_
not modelled 8.6 40
PDB header:transferase
Chain: X: PDB Molecule:dna polymerase ii large subunit;
PDBTitle: dna polymerase d large subunit dp2(1-300) from pyrococcus horikoshii
70c4u4hA_
not modelled 8.3 23
PDB header:viral protein
Chain: A: PDB Molecule:tegument protein ul21;
PDBTitle: crystal structure of hsv-1 ul21 n-terminal domain
71c1u3eM_
not modelled 8.3 17
PDB header:dna binding protein/dna
Chain: M: PDB Molecule:hnh homing endonuclease;
PDBTitle: dna binding and cleavage by the hnh homing endonuclease i-hmui
72c2o1uA_
not modelled 8.2 29
PDB header:chaperone
Chain: A: PDB Molecule:endoplasmin;
PDBTitle: structure of full length grp94 with amp-pnp bound
73d1wg8a1
not modelled 8.0 25
Fold:SAM domain-like
Superfamily:Putative methyltransferase TM0872, insert domain
Family:Putative methyltransferase TM0872, insert domain
74d1k25a1
not modelled 7.9 11
Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
75c2ip2B_
not modelled 7.9 19
PDB header:transferase
Chain: B: PDB Molecule:probable phenazine-specific methyltransferase;
PDBTitle: structure of the pyocyanin biosynthetic protein phzm
76d1tw3a1
not modelled 7.6 31
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Plant O-methyltransferase, N-terminal domain
77c5lltB_
not modelled 7.6 18
PDB header:transferase
Chain: B: PDB Molecule:nicotinate-nucleotide adenylyltransferase;
PDBTitle: plasmodium falciparum nicotinic acid mononucleotide2 adenylyltransferase complexed with naad
78c6h45B_
not modelled 7.6 16
PDB header:transferase
Chain: B: PDB Molecule:queuine trna-ribosyltransferase catalytic subunit 1;
PDBTitle: crystal structure of the human tgt catalytic subunit qtrt1 in complex2 with queuine
79d1g3wa1
not modelled 7.5 12
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Iron-dependent repressor protein
80c5zzaP_
not modelled 7.5 29
PDB header:structural protein
Chain: P: PDB Molecule:uncharacterized protein;
PDBTitle: odinprofilin/rabbit actin complex
81c4z2yA_
not modelled 7.3 23
PDB header:transferase
Chain: A: PDB Molecule:calo6;
PDBTitle: crystal structure of methyltransferase calo6
82c4e6kI_
not modelled 7.1 30
PDB header:metal binding protein/electron transport
Chain: I: PDB Molecule:bacterioferritin-associated ferredoxin;
PDBTitle: 2.0 a resolution structure of pseudomonas aeruginosa bacterioferritin2 (bfrb) in complex with bacterioferritin associated ferredoxin (bfd)
83c3mwmA_
not modelled 7.1 20
PDB header:transcription
Chain: A: PDB Molecule:putative metal uptake regulation protein;
PDBTitle: graded expression of zinc-responsive genes through two regulatory2 zinc-binding sites in zur
84c3omdB_
not modelled 7.1 7
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of unknown function protein from leptospirillum2 rubarum
85c3fpnA_
not modelled 7.0 17
PDB header:dna binding protein
Chain: A: PDB Molecule:geobacillus stearothermophilus uvra interaction domain;
PDBTitle: crystal structure of uvra-uvrb interaction domains
86d1qupa2
not modelled 7.0 22
Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
87c2kt7A_
not modelled 7.0 31
PDB header:cell adhesion, membrane protein
Chain: A: PDB Molecule:putative peptidoglycan bound protein (lpxtg
PDBTitle: solution nmr structure of mucin-binding domain of protein2 lmo0835 from listeria monocytogenes, northeast structural3 genomics consortium target lmr64a
88d1u5ta2
not modelled 7.0 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Vacuolar sorting protein domain
89d1pzqa_
not modelled 6.9 30
Fold:Dimerisation interlock
Superfamily:Docking domain A of the erythromycin polyketide synthase (DEBS)
Family:Docking domain A of the erythromycin polyketide synthase (DEBS)
90c1tw3A_
not modelled 6.8 28
PDB header:transferase
Chain: A: PDB Molecule:carminomycin 4-o-methyltransferase;
PDBTitle: crystal structure of carminomycin-4-o-methyltransferase (dnrk) in2 complex with s-adenosyl-l-homocystein (sah) and 4-methoxy-e-3 rhodomycin t (m-et)
91c1wsuA_
not modelled 6.7 20
PDB header:translation/rna
Chain: A: PDB Molecule:selenocysteine-specific elongation factor;
PDBTitle: c-terminal domain of elongation factor selb complexed with2 secis rna
92c2x4hA_
not modelled 6.7 14
PDB header:transcription
Chain: A: PDB Molecule:hypothetical protein sso2273;
PDBTitle: crystal structure of the hypothetical protein sso2273 from2 sulfolobus solfataricus
93c1xduA_
not modelled 6.6 21
PDB header:transferase
Chain: A: PDB Molecule:protein rdmb;
PDBTitle: crystal structure of aclacinomycin-10-hydroxylase (rdmb) in complex2 with sinefungin (sfg)
94c3gxgA_
not modelled 6.6 26
PDB header:hydrolase
Chain: A: PDB Molecule:putative phosphatase (duf442);
PDBTitle: crystal structure of putative phosphatase (duf442) (yp_001181608.1)2 from shewanella putrefaciens cn-32 at 1.60 a resolution
95c1af7A_
not modelled 6.5 20
PDB header:methyltransferase
Chain: A: PDB Molecule:chemotaxis receptor methyltransferase cher;
PDBTitle: cher from salmonella typhimurium
96c3fysA_
not modelled 6.5 20
PDB header:fatty acid-binding protein
Chain: A: PDB Molecule:protein degv;
PDBTitle: crystal structure of degv, a fatty acid binding protein2 from bacillus subtilis
97c6ff2A_
not modelled 6.4 15
PDB header:chaperone
Chain: A: PDB Molecule:copper chaperone copz;
PDBTitle: copz metallochaperone
98d2fi0a1
not modelled 6.4 23
Fold:SP0561-like
Superfamily:SP0561-like
Family:SP0561-like
99c2j7uA_
not modelled 6.4 24
PDB header:viral protein
Chain: A: PDB Molecule:rna dependent rna polymerase;
PDBTitle: dengue virus ns5 rna dependent rna polymerase domain

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