Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0863_(-)_962602_962883
DateFri Jul 26 01:50:45 BST 2019
Unique Job IDca6075fde2399208
SequenceVCSVIADQRR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:45.387 Y:35.880 Z:37.852
Model (left) based on template c5c0wJ_
Top template information
PDB header:hydrolase/rna
Chain: J: PDB Molecule:exosome complex exonuclease dis3;
PDBTitle: structure of a 12-subunit nuclear exosome complex bound to single-2 stranded rna substrates
Confidence and coverage
Confidence: 59.8% Coverage: 51%
47 residues ( 51% of your sequence) have been modelled with 59.8% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5c0wJ_
59.8 21
PDB header:hydrolase/rna
Chain: J: PDB Molecule:exosome complex exonuclease dis3;
PDBTitle: structure of a 12-subunit nuclear exosome complex bound to single-2 stranded rna substrates
2c2wp8J_
57.0 21
PDB header:hydrolase
Chain: J: PDB Molecule:exosome complex exonuclease dis3;
PDBTitle: yeast rrp44 nuclease
3c6d6rK_
39.6 44
PDB header:hydrolase
Chain: K: PDB Molecule:exosome complex exonuclease rrp44;
PDBTitle: human nuclear exosome-mtr4 rna complex - composite map after focused2 reconstruction
4c6md3F_
36.5 50
PDB header:hydrolase/rna
Chain: F: PDB Molecule:rrp44p homologue;
PDBTitle: structure of t. brucei rrp44 pin domain
5d2a1ha1
32.5 18
Fold:D-aminoacid aminotransferase-like PLP-dependent enzymes
Superfamily:D-aminoacid aminotransferase-like PLP-dependent enzymes
Family:D-aminoacid aminotransferase-like PLP-dependent enzymes
6c5oqj4_
27.9 25
PDB header:transcription
Chain: 4: PDB Molecule:rna polymerase ii transcription factor b subunit 4;
PDBTitle: structure of yeast transcription pre-initiation complex with tfiih
7c5n60Q_
27.0 50
PDB header:transferase
Chain: Q: PDB Molecule:rna polymerase i-specific transcription initiation factor
PDBTitle: cryo-em structure of rna polymerase i in complex with rrn3 and core2 factor (orientation i)
8c2r9qD_
24.9 23
PDB header:hydrolase
Chain: D: PDB Molecule:2'-deoxycytidine 5'-triphosphate deaminase;
PDBTitle: crystal structure of 2'-deoxycytidine 5'-triphosphate deaminase from2 agrobacterium tumefaciens
9c2abjG_
22.0 18
PDB header:transferase
Chain: G: PDB Molecule:branched-chain-amino-acid aminotransferase, cytosolic;
PDBTitle: crystal structure of human branched chain amino acid transaminase in a2 complex with an inhibitor, c16h10n2o4f3scl, and pyridoxal 5'3 phosphate.
10c6grvA_
19.2 22
PDB header:metal binding protein
Chain: A: PDB Molecule:metallothionein;
PDBTitle: cadmium(ii) form of full-length metallothionein from pseudomonas2 fluorescens q2-87 (pflq2 mt)
11c5jcaS_
14.7 40
PDB header:oxidoreductase
Chain: S: PDB Molecule:nadh-dependent ferredoxin:nadp oxidoreductase (nfni)
PDBTitle: nadp(h) bound nadh-dependent ferredoxin:nadp oxidoreductase (nfni)2 from pyrococcus furiosus
12c4ylfA_
14.2 40
PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydroorotate dehydrogenase b (nad(+)), electron transfer
PDBTitle: insights into flavin-based electron bifurcation via the nadh-dependent2 reduced ferredoxin-nadp oxidoreductase structure
13d1rfma_
13.5 30
Fold:L-sulfolactate dehydrogenase-like
Superfamily:L-sulfolactate dehydrogenase-like
Family:L-sulfolactate dehydrogenase-like
14c5op0B_
13.0 13
PDB header:transferase
Chain: B: PDB Molecule:dna polymerase ligd, polymerase domain;
PDBTitle: structure of prim-polc from mycobacterium smegmatis
15c2iruA_
12.2 10
PDB header:transferase
Chain: A: PDB Molecule:putative dna ligase-like protein rv0938/mt0965;
PDBTitle: crystal structure of the polymerase domain from mycobacterium2 tuberculosis ligase d
16d1nxua_
11.7 14
Fold:L-sulfolactate dehydrogenase-like
Superfamily:L-sulfolactate dehydrogenase-like
Family:L-sulfolactate dehydrogenase-like
17d1xrha_
11.6 19
Fold:L-sulfolactate dehydrogenase-like
Superfamily:L-sulfolactate dehydrogenase-like
Family:L-sulfolactate dehydrogenase-like
18c3uoeB_
11.1 35
PDB header:oxidoreductase
Chain: B: PDB Molecule:dehydrogenase;
PDBTitle: the crystal structure of dehydrogenase from sinorhizobium meliloti
19c1ep3B_
10.7 50
PDB header:oxidoreductase
Chain: B: PDB Molecule:dihydroorotate dehydrogenase b (pyrk subunit);
PDBTitle: crystal structure of lactococcus lactis dihydroorotate dehydrogenase2 b. data collected under cryogenic conditions.
20c3lq9B_
10.6 44
PDB header:signaling protein
Chain: B: PDB Molecule:dna-damage-inducible transcript 4 protein;
PDBTitle: crystal structure of human redd1, a hypoxia-induced regulator of mtor
21c6bymA_
not modelled 10.2 22
PDB header:lipid transport
Chain: A: PDB Molecule:sterol-binding protein;
PDBTitle: crystal structure of the sterol-bound second start domain of yeast2 lam4
22c5vj7B_
not modelled 8.7 40
PDB header:oxidoreductase
Chain: B: PDB Molecule:ferredoxin-nadp(+) reductase subunit alpha;
PDBTitle: ferredoxin nadp oxidoreductase (xfn)
23c5dmuA_
not modelled 8.3 16
PDB header:transferase
Chain: A: PDB Molecule:nhej polymerase;
PDBTitle: structure of the nhej polymerase from methanocella paludicola
24c2piaA_
not modelled 7.4 33
PDB header:reductase
Chain: A: PDB Molecule:phthalate dioxygenase reductase;
PDBTitle: phthalate dioxygenase reductase: a modular structure for electron2 transfer from pyridine nucleotides to [2fe-2s]
25c1d4cB_
not modelled 7.2 24
PDB header:oxidoreductase
Chain: B: PDB Molecule:flavocytochrome c fumarate reductase;
PDBTitle: crystal structure of the uncomplexed form of the flavocytochrome c2 fumarate reductase of shewanella putrefaciens strain mr-1
26c2kfqA_
not modelled 7.1 30
PDB header:de novo protein
Chain: A: PDB Molecule:fp1;
PDBTitle: nmr structure of fp1
27c2n9oA_
not modelled 6.9 33
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase rnf126;
PDBTitle: solution structure of rnf126 n-terminal zinc finger domain
28d1ep3b2
not modelled 6.7 56
Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Dihydroorotate dehydrogenase B, PyrK subunit
29c2faoB_
not modelled 6.7 19
PDB header:hydrolase/transferase
Chain: B: PDB Molecule:probable atp-dependent dna ligase;
PDBTitle: crystal structure of pseudomonas aeruginosa ligd polymerase2 domain
30c2m2jA_
not modelled 6.4 32
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative periplasmic protein;
PDBTitle: solution nmr structure of the n-terminal domain of stm1478 from2 salmonella typhimurium lt2: target str147a of the northeast3 structural genomics consortium (nesg), and apc101565 of the midwest4 center for structural genomics (mcsg).
31d1awda_
not modelled 6.4 27
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
32c1j5mA_
not modelled 6.3 75
PDB header:metal binding protein
Chain: A: PDB Molecule:metallothionein-1;
PDBTitle: solution structure of the synthetic 113cd_3 beta_n domain2 of lobster metallothionein-1
33d1frra_
not modelled 6.2 31
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
34c2g8yB_
not modelled 6.1 23
PDB header:oxidoreductase
Chain: B: PDB Molecule:malate/l-lactate dehydrogenases;
PDBTitle: the structure of a putative malate/lactate dehydrogenase from e. coli.
35c3uzbA_
not modelled 5.8 17
PDB header:transferase
Chain: A: PDB Molecule:branched-chain-amino-acid aminotransferase;
PDBTitle: crystal structures of branched-chain aminotransferase from deinococcus2 radiodurans complexes with alpha-ketoisocaproate and l-glutamate3 suggest its radio-resistance for catalysis
36d1fxia_
not modelled 5.8 33
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
37c1wtjB_
not modelled 5.6 36
PDB header:oxidoreductase
Chain: B: PDB Molecule:ureidoglycolate dehydrogenase;
PDBTitle: crystal structure of delta1-piperideine-2-carboxylate2 reductase from pseudomonas syringae pvar.tomato
38d2axth1
not modelled 5.5 27
Fold:Single transmembrane helix
Superfamily:Photosystem II 10 kDa phosphoprotein PsbH
Family:PsbH-like
39c2axtH_
not modelled 5.5 27
PDB header:electron transport
Chain: H: PDB Molecule:photosystem ii reaction center h protein;
PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus

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