Phyre 2 Results for RVBD0867c_(rpfA)_964315

Email	mdejesus@rockefeller.edu
Description	RVBD0867c_(rpfA)_964315_965538
Date	Fri Jul 26 01:50:45 BST 2019
Unique Job ID	f5aa8999c06c7c44
Sequence	MSGRHRKPTT ... Download FASTA
Job Type	normal
Job Expiry

Summary

Top model

Image coloured by rainbow N → C terminus

Model dimensions (Å):

X:27.800 Y:48.617 Z:35.587

Model (left) based on template c1xsfA_

Top template information

PDB header:cell cycle, hydrolase
Chain: A: PDB Molecule:probable resuscitation-promoting factor rpfb;
PDBTitle: solution structure of a resuscitation promoting factor2 domain from mycobacterium tuberculosis

Confidence and coverage

Confidence:

100.0%

Coverage:

26%

105 residues ( 26% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.

You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.

Warning: 82% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.

3D viewing

Interactive 3D view in JSmol

For other options to view your downloaded structure offline see the FAQ

Sequence analysis

Download FASTA version

Secondary structure and disorder prediction [Show]

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60

Sequence M S G R H R K P T T S N V S V A K I A F T G A V L G G G G I A M A A Q A T A A T D G E W D Q V A R C E S G G N W S I N T

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
?

Disorder confidence

. . . . . . . . . 70 . . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120

Sequence G N G Y L G G L Q F T Q S T W A A H G G G E F A P S A Q L A S R E Q Q I A V G E R V L A T Q G R G A W P V C G R G L S N

Secondary structure

SS confidence

Disorder
? ? ? ? ? ? ? ? ?
?
? ? ? ? ?
? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 130 . . . . . . . . . 140 . . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180

Sequence A T P R E V L P A S A A M D A P L D A A A V N G E P A P L A P P P A D P A P P V E L A A N D L P A P L G E P L P A A P A

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210 . . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240

Sequence D P A P P A D L A P P A P A D V A P P V E L A V N D L P A P L G E P L P A A P A D P A P P A D L A P P A P A D L A P P A

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280 . . . . . . . . . 290 . . . . . . . . . 300

Sequence P A D L A P P A P A D L A P P V E L A V N D L P A P L G E P L P A A P A E L A P P A D L A P A S A D L A P P A P A D L A

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350 . . . . . . . . . 360

Sequence P P A P A E L A P P A P A D L A P P A A V N E Q T A P G D Q P A T A P G G P V G L A T D L E L P E P D P Q P A D A P P P

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . .

Sequence G D V T E A P A E T P Q V S N I A Y T K K L W Q A I R A Q D V C G N D A L D S L A Q P Y V I G

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
? ?
?
?
? ? ? ? ? ?

Disorder confidence

Confidence Key
High(9) Low (0)

? Disordered ( 82%)

Alpha helix ( 17%)

Beta strand ( 2%)

Domain analysis [Show]

Rank Aligned region

PDB 1xsf chain A

3D model

Region: 14 - 118
Aligned: 105
Modelled: 105
Confidence: 100.0%
Identity: 48%
PDB header:cell cycle, hydrolase
Chain: A: PDB Molecule:probable resuscitation-promoting factor rpfb;
PDBTitle: solution structure of a resuscitation promoting factor2 domain from mycobacterium tuberculosis

Phyre2

PDB 5e27 chain B

3D model

Region: 1 - 117
Aligned: 116
Modelled: 116
Confidence: 100.0%
Identity: 44%
PDB header:cell adhesion
Chain: B: PDB Molecule:resuscitation-promoting factor rpfb;
PDBTitle: the structure of resuscitation promoting factor b from m. tuberculosis2 reveals unexpected ubiquitin-like domains

Phyre2

PDB 3eo5 chain A

3D model

Region: 1 - 118
Aligned: 115
Modelled: 118
Confidence: 100.0%
Identity: 44%
PDB header:cell adhesion
Chain: A: PDB Molecule:resuscitation-promoting factor rpfb;
PDBTitle: crystal structure of the resuscitation promoting factor rpfb

Phyre2

PDB 1xsf chain A domain 1

3D model

Region: 37 - 118
Aligned: 82
Modelled: 82
Confidence: 100.0%
Identity: 56%
Fold: Lysozyme-like
Superfamily: Lysozyme-like
Family: RPF-like

Phyre2

PDB 4ow1 chain A

Region: 40 - 122
Aligned: 80
Modelled: 80
Confidence: 100.0%
Identity: 59%
PDB header:hydrolase
Chain: A: PDB Molecule:resuscitation-promoting factor rpfc;
PDBTitle: crystal structure of resuscitation promoting factor c

Phyre2

PDB 3bkh chain A

3D model

Region: 46 - 78
Aligned: 33
Modelled: 32
Confidence: 94.6%
Identity: 24%
PDB header:hydrolase
Chain: A: PDB Molecule:lytic transglycosylase;
PDBTitle: crystal structure of the bacteriophage phikz lytic2 transglycosylase, gp144

Phyre2

PDB 2fbd chain B

3D model

Region: 42 - 113
Aligned: 72
Modelled: 72
Confidence: 88.3%
Identity: 21%
PDB header:hydrolase
Chain: B: PDB Molecule:lysozyme 1;
PDBTitle: the crystallographic structure of the digestive lysozyme 1 from musca2 domestica at 1.90 ang.

Phyre2

PDB 1iiz chain A

3D model

Region: 42 - 111
Aligned: 70
Modelled: 70
Confidence: 87.3%
Identity: 16%
Fold: Lysozyme-like
Superfamily: Lysozyme-like
Family: C-type lysozyme

Phyre2

PDB 1hfx chain A

Region: 42 - 113
Aligned: 69
Modelled: 72
Confidence: 85.4%
Identity: 20%
Fold: Lysozyme-like
Superfamily: Lysozyme-like
Family: C-type lysozyme

Phyre2

PDB 1yro chain A domain 1

3D model

Region: 42 - 113
Aligned: 72
Modelled: 72
Confidence: 85.2%
Identity: 24%
Fold: Lysozyme-like
Superfamily: Lysozyme-like
Family: C-type lysozyme

Phyre2

PDB 1fkq chain A

Region: 43 - 113
Aligned: 71
Modelled: 71
Confidence: 84.7%
Identity: 23%
Fold: Lysozyme-like
Superfamily: Lysozyme-like
Family: C-type lysozyme

Phyre2

PDB 2z2f chain A

3D model

Region: 42 - 111
Aligned: 67
Modelled: 70
Confidence: 84.6%
Identity: 24%
PDB header:hydrolase
Chain: A: PDB Molecule:lysozyme c-2;
PDBTitle: x-ray crystal structure of bovine stomach lysozyme

Phyre2

PDB 1b9o chain A

Region: 42 - 113
Aligned: 72
Modelled: 72
Confidence: 84.0%
Identity: 17%
Fold: Lysozyme-like
Superfamily: Lysozyme-like
Family: C-type lysozyme

Phyre2

PDB 1f6s chain A

3D model

Region: 43 - 111
Aligned: 69
Modelled: 69
Confidence: 82.0%
Identity: 20%
Fold: Lysozyme-like
Superfamily: Lysozyme-like
Family: C-type lysozyme

Phyre2

PDB 1alc chain A

Region: 42 - 111
Aligned: 70
Modelled: 70
Confidence: 80.9%
Identity: 17%
Fold: Lysozyme-like
Superfamily: Lysozyme-like
Family: C-type lysozyme

Phyre2

PDB 1qsa chain A domain 2

3D model

Region: 46 - 76
Aligned: 31
Modelled: 31
Confidence: 79.0%
Identity: 29%
Fold: Lysozyme-like
Superfamily: Lysozyme-like
Family: Bacterial muramidase, catalytic domain

Phyre2

PDB 3w6d chain B

Region: 46 - 79
Aligned: 34
Modelled: 34
Confidence: 78.7%
Identity: 21%
PDB header:hydrolase
Chain: B: PDB Molecule:lysozyme-like chitinolytic enzyme;
PDBTitle: crystal structure of catalytic domain of chitinase from ralstonia sp.2 a-471 (e141q) in complex with tetrasaccharide

Phyre2

PDB 1jse chain A

3D model

Region: 42 - 111
Aligned: 67
Modelled: 70
Confidence: 78.4%
Identity: 24%
Fold: Lysozyme-like
Superfamily: Lysozyme-like
Family: C-type lysozyme

Phyre2

PDB 1lsg chain A domain 1

Region: 43 - 111
Aligned: 69
Modelled: 69
Confidence: 77.4%
Identity: 25%
Fold: Lysozyme-like
Superfamily: Lysozyme-like
Family: C-type lysozyme

Phyre2

PDB 2y8p chain A

3D model

Region: 46 - 75
Aligned: 30
Modelled: 30
Confidence: 74.0%
Identity: 30%
PDB header:lyase
Chain: A: PDB Molecule:endo-type membrane-bound lytic murein transglycosylase a;
PDBTitle: crystal structure of an outer membrane-anchored endolytic2 peptidoglycan lytic transglycosylase (mlte) from3 escherichia coli

Phyre2

1
c1xsfA_

2
c5e27B_

3
c3eo5A_

4
d1xsfa1

5
c4ow1A_

6
c3bkhA_

7
c2fbdB_

8
d1iiza_

9
d1hfxa_

10
d1yroa1

11
d1fkqa_

12
c2z2fA_

13
d1b9oa_

14
d1f6sa_

15
d1alca_

16
d1qsaa2

17
c3w6dB_

18
d1jsea_

19
d1lsga1

20
c2y8pA_

21

22

23

24

25

26

27

28

29

30

31

32

33

34

35

36

37

38

39

40

41

42

43

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45

46

47