Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0871_(cspB)_967901_968308
DateFri Jul 26 01:50:46 BST 2019
Unique Job ID8022bbf22df1fd71
SequenceVPTGKVKWYD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:31.750 Y:34.495 Z:30.513
Model (left) based on template c3a0jB_
Top template information
PDB header:transcription
Chain: B: PDB Molecule:cold shock protein;
PDBTitle: crystal structure of cold shock protein 1 from thermus2 thermophilus hb8
Confidence and coverage
Confidence: 99.9% Coverage: 50%
68 residues ( 50% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3a0jB_



99.9 40
PDB header:transcription
Chain: B: PDB Molecule:cold shock protein;
PDBTitle: crystal structure of cold shock protein 1 from thermus2 thermophilus hb8
2d2es2a1



99.9 45
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
3c2k5nA_



99.9 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative cold-shock protein;
PDBTitle: solution nmr structure of the n-terminal domain of protein eca15802 from erwinia carotovora, northeast structural genomics consortium3 target ewr156a
4d1c9oa_



99.9 45
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
5c5o6fA_



99.9 34
PDB header:dna binding protein
Chain: A: PDB Molecule:cold-shock protein;
PDBTitle: nmr structure of cold shock protein a from corynebacterium2 pseudotuberculosis
6c5xv9A_



99.9 40
PDB header:rna binding protein
Chain: A: PDB Molecule:cold-shock dna-binding domain family protein;
PDBTitle: solution structure of cold shock protein from colwellia2 psychrerythraea
7c4a4iA_



99.9 34
PDB header:rna binding protein
Chain: A: PDB Molecule:protein lin-28 homolog b;
PDBTitle: crystal structure of the human lin28b cold shock domain
8d1g6pa_



99.9 48
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
9c2kcmA_



99.9 30
PDB header:nucleic acid binding protein
Chain: A: PDB Molecule:cold shock domain family protein;
PDBTitle: solution nmr structure of the n-terminal ob-domain of so_1732 from2 shewanella oneidensis. northeast structural genomics consortium3 target sor210a.
10c3aqqD_



99.8 24
PDB header:dna binding protein
Chain: D: PDB Molecule:calcium-regulated heat stable protein 1;
PDBTitle: crystal structure of human crhsp-24
11d1mjca_



99.8 45
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
12c3camB_



99.8 44
PDB header:gene regulation
Chain: B: PDB Molecule:cold-shock domain family protein;
PDBTitle: crystal structure of the cold shock domain protein from neisseria2 meningitidis
13d1h95a_



99.8 31
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
14c2lssA_



99.8 44
PDB header:rna binding protein, dna binding protein
Chain: A: PDB Molecule:cold shock-like protein;
PDBTitle: solution structure of the r. rickettsii cold shock-like protein
15c3trzE_



99.8 32
PDB header:rna binding protein/rna
Chain: E: PDB Molecule:protein lin-28 homolog a;
PDBTitle: mouse lin28a in complex with let-7d microrna pre-element
16c2mqhA_



99.8 39
PDB header:dna binding protein
Chain: A: PDB Molecule:nucleic acid binding protein;
PDBTitle: solution structure of the chlamydomonas reinhardtii nab1 cold shock2 domain, csd1
17d1wfqa_



99.7 32
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
18c2ytyA_



99.7 24
PDB header:rna binding protein
Chain: A: PDB Molecule:cold shock domain-containing protein e1;
PDBTitle: solution structure of the fourth cold-shock domain of the human2 kiaa0885 protein (unr protein)
19c2ytxA_



99.6 25
PDB header:rna binding protein
Chain: A: PDB Molecule:cold shock domain-containing protein e1;
PDBTitle: solution structure of the second cold-shock domain of the human2 kiaa0885 protein (unr protein)
20c1x65A_



99.5 17
PDB header:rna binding protein
Chain: A: PDB Molecule:unr protein;
PDBTitle: solution structure of the third cold-shock domain of the human2 kiaa0885 protein (unr protein)
21c2ytvA_



not modelled 99.5 25
PDB header:rna binding protein
Chain: A: PDB Molecule:cold shock domain-containing protein e1;
PDBTitle: solution structure of the fifth cold-shock domain of the human2 kiaa0885 protein (unr protein)
22c2bh8B_



not modelled 99.4 48
PDB header:transcription
Chain: B: PDB Molecule:1b11;
PDBTitle: combinatorial protein 1b11
23d2ix0a2



not modelled 97.2 29
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
24c2ix1A_



not modelled 96.7 27
PDB header:hydrolase
Chain: A: PDB Molecule:exoribonuclease 2;
PDBTitle: rnase ii d209n mutant
25d1a62a2



not modelled 94.4 28
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
26c2a8vA_



not modelled 92.6 31
PDB header:protein/rna
Chain: A: PDB Molecule:rna binding domain of rho transcription
PDBTitle: rho transcription termination factor/rna complex
27d1smxa_



not modelled 91.9 23
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
28d2ix0a1



not modelled 91.9 13
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
29c3l0oA_



not modelled 89.7 18
PDB header:hydrolase
Chain: A: PDB Molecule:transcription termination factor rho;
PDBTitle: structure of rna-free rho transcription termination factor from2 thermotoga maritima
30c1hh2P_



not modelled 87.9 18
PDB header:transcription regulation
Chain: P: PDB Molecule:n utilization substance protein a;
PDBTitle: crystal structure of nusa from thermotoga maritima
31c4aimA_



not modelled 87.0 33
PDB header:transferase/peptide
Chain: A: PDB Molecule:polyribonucleotide nucleotidyltransferase;
PDBTitle: crystal structure of c. crescentus pnpase bound to rnase e2 recognition peptide
32d1y14b1



not modelled 84.9 23
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
33c1l2fA_



not modelled 84.9 18
PDB header:transcription
Chain: A: PDB Molecule:n utilization substance protein a;
PDBTitle: crystal structure of nusa from thermotoga maritima: a2 structure-based role of the n-terminal domain
34c4oxpA_



not modelled 83.5 20
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease e;
PDBTitle: x-ray crystal structure of the s1 and 5'-sensor domains of rnase e2 from caulobacter crescentus
35c5xguB_



not modelled 82.5 36
PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease r;
PDBTitle: escherichia coli. rnase r
36d1kl9a2



not modelled 81.8 20
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
37c1zeqX_



not modelled 81.0 18
PDB header:metal binding protein
Chain: X: PDB Molecule:cation efflux system protein cusf;
PDBTitle: 1.5 a structure of apo-cusf residues 6-88 from escherichia2 coli
38c3go5A_



not modelled 80.8 17
PDB header:gene regulation
Chain: A: PDB Molecule:multidomain protein with s1 rna-binding domains;
PDBTitle: crystal structure of a multidomain protein with nucleic acid binding2 domains (sp_0946) from streptococcus pneumoniae tigr4 at 1.40 a3 resolution
39d1hh2p1



not modelled 80.3 17
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
40c2k52A_



not modelled 79.6 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein mj1198;
PDBTitle: structure of uncharacterized protein mj1198 from2 methanocaldococcus jannaschii. northeast structural3 genomics target mjr117b
41c5lm7A_



not modelled 77.3 20
PDB header:transcription
Chain: A: PDB Molecule:transcription termination/antitermination protein nusa;
PDBTitle: crystal structure of the lambda n-nus factor complex
42d2c35b1



not modelled 76.2 17
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
43c1xpuB_



not modelled 75.1 22
PDB header:transcription/rna
Chain: B: PDB Molecule:rho transcription termination factor;
PDBTitle: structural mechanism of inhibition of the rho transcription2 termination factor by the antibiotic 5a-(3-formylphenylsulfanyl)-3 dihydrobicyclomycin (fpdb)
44c2l55A_



not modelled 71.0 29
PDB header:metal binding protein
Chain: A: PDB Molecule:silb,silver efflux protein, mfp component of the three
PDBTitle: solution structure of the c-terminal domain of silb from cupriavidus2 metallidurans
45c6qh2A_



not modelled 69.6 29
PDB header:signaling protein
Chain: A: PDB Molecule:polyribonucleotide nucleotidyltransferase;
PDBTitle: solution nmr ensemble for a chimeric kh-s1 domain construct of2 exosomal polynucleotide phosphrylase at 298k compiled using the3 comand method
46d2ba0a1



not modelled 67.0 12
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
47c2gu1A_



not modelled 66.5 28
PDB header:hydrolase
Chain: A: PDB Molecule:zinc peptidase;
PDBTitle: crystal structure of a zinc containing peptidase from2 vibrio cholerae
48c5x50G_



not modelled 65.8 24
PDB header:transferase
Chain: G: PDB Molecule:rna polymerase ii subunit;
PDBTitle: rna polymerase ii from komagataella pastoris (type-2 crystal)
49c2c4rL_



not modelled 65.7 19
PDB header:hydrolase
Chain: L: PDB Molecule:ribonuclease e;
PDBTitle: catalytic domain of e. coli rnase e
50d1wi5a_



not modelled 65.0 19
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
51c6flqF_



not modelled 62.4 20
PDB header:transcription
Chain: F: PDB Molecule:transcription termination/antitermination protein nusa;
PDBTitle: cryoem structure of e.coli rna polymerase paused elongation complex2 bound to nusa
52c2b8kG_



not modelled 61.6 23
PDB header:transferase
Chain: G: PDB Molecule:dna-directed rna polymerase ii 19 kda polypeptide;
PDBTitle: 12-subunit rna polymerase ii
53c2vnuD_



not modelled 61.5 16
PDB header:hydrolase/rna
Chain: D: PDB Molecule:exosome complex exonuclease rrp44;
PDBTitle: crystal structure of sc rrp44
54c4pmwB_



not modelled 60.4 12
PDB header:hydrolase/rna
Chain: B: PDB Molecule:dis3-like exonuclease 2;
PDBTitle: structure of mouse dis3l2 in complex with oligou rna substrate
55c5x8r8_



not modelled 59.2 31
PDB header:ribosome
Chain: 8: PDB Molecule:30s ribosomal protein s1, chloroplastic;
PDBTitle: structure of the 30s small subunit of chloroplast ribosome from2 spinach
56c2mflA_



not modelled 58.3 23
PDB header:ribosomal protein
Chain: A: PDB Molecule:30s ribosomal protein s1;
PDBTitle: domain 2 of e. coli ribosomal protein s1
57d1t9ha1



not modelled 57.6 19
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
58d2z0sa1



not modelled 56.5 13
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
59c2c35F_



not modelled 56.0 17
PDB header:transferase
Chain: F: PDB Molecule:dna-directed rna polymerase ii 19 kda polypeptide;
PDBTitle: subunits rpb4 and rpb7 of human rna polymerase ii
60c3bpuA_



not modelled 55.2 21
PDB header:transferase
Chain: A: PDB Molecule:membrane-associated guanylate kinase, ww and pdz domain-
PDBTitle: crystal structure of the 3rd pdz domain of human membrane associated2 guanylate kinase, c677s and c709s double mutant
61c5n7gA_



not modelled 54.8 18
PDB header:signaling protein
Chain: A: PDB Molecule:membrane-associated guanylate kinase, ww and pdz domain-
PDBTitle: magi-1 complexed with a synthetic prsk1 peptide
62c3tufB_



not modelled 51.0 18
PDB header:signaling protein
Chain: B: PDB Molecule:stage ii sporulation protein q;
PDBTitle: structure of the spoiiq-spoiiiah pore forming complex.
63d1go3e1



not modelled 50.6 26
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
64c1ybyB_



not modelled 50.5 16
PDB header:translation
Chain: B: PDB Molecule:translation elongation factor p;
PDBTitle: conserved hypothetical protein cth-95 from clostridium thermocellum
65c3h0gS_



not modelled 50.3 29
PDB header:transcription
Chain: S: PDB Molecule:dna-directed rna polymerase ii subunit rpb7;
PDBTitle: rna polymerase ii from schizosaccharomyces pombe
66c2oceA_



not modelled 50.1 26
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein pa5201;
PDBTitle: crystal structure of tex family protein pa5201 from2 pseudomonas aeruginosa
67c2eqsA_



not modelled 49.3 26
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent rna helicase dhx8;
PDBTitle: solution structure of the s1 rna binding domain of human2 atp-dependent rna helicase dhx8
68c3sluB_



not modelled 47.3 17
PDB header:hydrolase
Chain: B: PDB Molecule:m23 peptidase domain protein;
PDBTitle: crystal structure of nmb0315
69c3nyyA_



not modelled 45.8 20
PDB header:hydrolase
Chain: A: PDB Molecule:putative glycyl-glycine endopeptidase lytm;
PDBTitle: crystal structure of a putative glycyl-glycine endopeptidase lytm2 (rumgna_02482) from ruminococcus gnavus atcc 29149 at 1.60 a3 resolution
70d1q46a2



not modelled 44.5 10
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
71d2asba1



not modelled 44.5 19
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
72d1gpra_



not modelled 41.4 29
Fold:Barrel-sandwich hybrid
Superfamily:Duplicated hybrid motif
Family:Glucose permease-like
73d2gpra_



not modelled 39.0 22
Fold:Barrel-sandwich hybrid
Superfamily:Duplicated hybrid motif
Family:Glucose permease-like
74c2xnqA_



not modelled 38.7 21
PDB header:rna binding protein
Chain: A: PDB Molecule:nuclear polyadenylated rna-binding protein 3;
PDBTitle: structural insights into cis element recognition of non-2 polyadenylated rnas by the nab3-rrm
75d2f3ga_



not modelled 37.7 20
Fold:Barrel-sandwich hybrid
Superfamily:Duplicated hybrid motif
Family:Glucose permease-like
76c2k4kA_



not modelled 37.1 23
PDB header:rna binding protein
Chain: A: PDB Molecule:general stress protein 13;
PDBTitle: solution structure of gsp13 from bacillus subtilis
77d1glaf_



not modelled 36.7 20
Fold:Barrel-sandwich hybrid
Superfamily:Duplicated hybrid motif
Family:Glucose permease-like
78d1u0la1



not modelled 35.0 14
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
79c2ahoB_



not modelled 34.9 18
PDB header:translation
Chain: B: PDB Molecule:translation initiation factor 2 alpha subunit;
PDBTitle: structure of the archaeal initiation factor eif2 alpha-gamma2 heterodimer from sulfolobus solfataricus complexed with gdpnp
80c2dhxA_



not modelled 34.1 21
PDB header:rna binding protein
Chain: A: PDB Molecule:poly (adp-ribose) polymerase family, member 10
PDBTitle: solution structure of the rrm domain in the human poly (adp-2 ribose) polymerase family, member 10 variant
81d1ueqa_



not modelled 34.0 17
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
82d1sr3a_



not modelled 33.4 17
Fold:OB-fold
Superfamily:Heme chaperone CcmE
Family:Heme chaperone CcmE
83c1nt9G_



not modelled 32.0 22
PDB header:transcription, transferase
Chain: G: PDB Molecule:dna-directed rna polymerase ii 19 kd polypeptide;
PDBTitle: complete 12-subunit rna polymerase ii
84c4wijA_



not modelled 32.0 38
PDB header:transcription
Chain: A: PDB Molecule:splicing factor, proline- and glutamine-rich;
PDBTitle: human splicing factor, construct 1
85c4cn0A_



not modelled 30.1 14
PDB header:cell cycle
Chain: A: PDB Molecule:protein ahnak2;
PDBTitle: an intertwined homodimer of the pdz homology domain of ahnak2
86d3bzka4



not modelled 28.6 30
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
87c2kjdA_



not modelled 28.4 19
PDB header:signaling protein
Chain: A: PDB Molecule:sodium/hydrogen exchange regulatory cofactor nhe-
PDBTitle: solution structure of extended pdz2 domain from nherf1 (150-2 270)
88d1j6qa_



not modelled 27.4 18
Fold:OB-fold
Superfamily:Heme chaperone CcmE
Family:Heme chaperone CcmE
89c1j6qA_



not modelled 27.4 18
PDB header:chaperone
Chain: A: PDB Molecule:cytochrome c maturation protein e;
PDBTitle: solution structure and characterization of the heme2 chaperone ccme
90d1uwva1



not modelled 26.5 19
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:TRAM domain
91c3mk4B_



not modelled 26.4 20
PDB header:protein transport
Chain: B: PDB Molecule:peroxisomal biogenesis factor 19;
PDBTitle: x-ray structure of human pex3 in complex with a pex19 derived peptide
92d1m5za_



not modelled 26.3 19
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
93c1go3E_



not modelled 26.1 26
PDB header:transferase
Chain: E: PDB Molecule:dna-directed rna polymerase subunit e;
PDBTitle: structure of an archeal homolog of the eukaryotic rna polymerase ii2 rpb4/rpb7 complex
94c4pqxC_



not modelled 26.0 15
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a nigd-like protein (baccac_02139) from2 bacteroides caccae atcc 43185 at 2.39 a resolution
95d2nn6h1



not modelled 25.9 15
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
96c3ajbB_



not modelled 24.6 20
PDB header:protein transport
Chain: B: PDB Molecule:peroxisomal biogenesis factor 19;
PDBTitle: crystal structure of human pex3p in complex with n-terminal pex19p2 peptide
97c4mtnA_



not modelled 24.6 12
PDB header:transcription regulator
Chain: A: PDB Molecule:transcription termination factor nusa;
PDBTitle: crystal structure of transcription termination factor nusa from2 planctomyces limnophilus dsm 3776
98c2cqoA_



not modelled 23.2 14
PDB header:ribosome
Chain: A: PDB Molecule:nucleolar protein of 40 kda;
PDBTitle: solution structure of the s1 rna binding domain of human2 hypothetical protein flj11067
99c3a5zD_



not modelled 22.8 16
PDB header:ligase
Chain: D: PDB Molecule:elongation factor p;
PDBTitle: crystal structure of escherichia coli genx in complex with elongation2 factor p
100d1tp5a1



not modelled 22.8 19
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
101d1wf1a_



not modelled 21.7 20
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
102c1t9hA_



not modelled 21.6 19
PDB header:hydrolase
Chain: A: PDB Molecule:probable gtpase engc;
PDBTitle: the crystal structure of yloq, a circularly permuted gtpase.
103c3l0oB_



not modelled 21.2 29
PDB header:hydrolase
Chain: B: PDB Molecule:transcription termination factor rho;
PDBTitle: structure of rna-free rho transcription termination factor from2 thermotoga maritima
104c3soeA_



not modelled 20.2 19
PDB header:signaling protein
Chain: A: PDB Molecule:membrane-associated guanylate kinase, ww and pdz domain-
PDBTitle: crystal structure of the 3rd pdz domain of the human membrane-2 associated guanylate kinase, ww and pdz domain-containing protein 33 (magi3)

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