Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0875c_(-)_973809_974297
DateFri Jul 26 01:50:46 BST 2019
Unique Job IDa4b55957fe8330fd
SequenceVKRGVATLPV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:33.012 Y:18.134 Z:34.080
Model (left) based on template d1hx0a1
Top template information
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
Confidence and coverage
Confidence: 42.9% Coverage: 21%
34 residues ( 21% of your sequence) have been modelled with 42.9% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1hx0a1
42.9 24
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
2d1g94a1
41.5 24
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
3d3dhpa1
39.9 30
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
4c1xmeB_
39.0 10
PDB header:oxidoreductase
Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii;
PDBTitle: structure of recombinant cytochrome ba3 oxidase from thermus2 thermophilus
5c4d7pA_
32.6 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:superoxide reductase;
PDBTitle: superoxide reductase (1fe-sor) from giardia intestinalis
6c1f3kA_
32.1 50
PDB header:toxin
Chain: A: PDB Molecule:omega-conotoxin txvii;
PDBTitle: three-dimensional solution structure of omega-conotoxin2 txvii, an l-type calcium channel blocker
7c5o4uK_
30.9 37
PDB header:cell adhesion
Chain: K: PDB Molecule:flagellin;
PDBTitle: the flagellin of pyrococcus furiosus
8d2q9oa2
30.3 12
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
9c4bv1D_
28.5 11
PDB header:oxidoreductase
Chain: D: PDB Molecule:neq011;
PDBTitle: superoxide reductase (neelaredoxin) from nanoarchaeum2 equitans
10c1y07A_
28.3 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:desulfoferrodoxin (rbo);
PDBTitle: crystal structure of the superoxide reductase from treponema pallidum
11c5z1lL_
27.4 37
PDB header:protein fibril
Chain: L: PDB Molecule:flagellin;
PDBTitle: cryo-em structure of methanoccus maripaludis archaellum
12c4u3qA_
26.2 23
PDB header:lipid binding protein
Chain: A: PDB Molecule:17 kda lipoprotein;
PDBTitle: crystal structure of recombinant tp0435 from treponema pallidum
13c2q5tA_
25.6 30
PDB header:toxin
Chain: A: PDB Molecule:cholix toxin;
PDBTitle: full-length cholix toxin from vibrio cholerae
14d1jaea1
25.2 23
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
15d1umga_
24.3 29
Fold:Sulfolobus fructose-1,6-bisphosphatase-like
Superfamily:Sulfolobus fructose-1,6-bisphosphatase-like
Family:Sulfolobus fructose-1,6-bisphosphatase-like
16c6exnc_
22.1 38
PDB header:splicing
Chain: C: PDB Molecule:pre-mrna-splicing factor snu114;
PDBTitle: post-catalytic p complex spliceosome with 3' splice site docked
17c5tfyJ_
21.3 16
PDB header:cell adhesion
Chain: J: PDB Molecule:flagellin;
PDBTitle: the archaeal flagellum of methanospirillum hungatei strain jf1.
18c1fu3A_
18.4 40
PDB header:metal transport inhibitor
Chain: A: PDB Molecule:delta-conotoxin txvia;
PDBTitle: three-dimensional structure in solution of the sodium2 channel agonist/antagonist delta-conotoxin txvia
19d1fu3a_
18.4 40
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:omega toxin-like
Family:Conotoxin
20d2cuaa_
17.8 9
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Periplasmic domain of cytochrome c oxidase subunit II
21c1yz2A_
not modelled 17.1 22
PDB header:toxin
Chain: A: PDB Molecule:delta-conotoxin am 2766;
PDBTitle: solution structure of am2766
22d1qcsa1
not modelled 15.3 27
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Cdc48 N-terminal domain-like
23c6cfwE_
not modelled 15.0 18
PDB header:membrane protein
Chain: E: PDB Molecule:mbh subunit;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase
24c5ujpB_
not modelled 14.8 20
PDB header:lyase
Chain: B: PDB Molecule:glyoxalase/bleomycin resisance protein/dioxygenase;
PDBTitle: the crystal structure of a glyoxalase/bleomycin resistance protein2 from streptomyces sp. cb03234
25d1dfxa1
not modelled 14.4 21
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Superoxide reductase-like
Family:Superoxide reductase-like
26c4f2fA_
not modelled 13.8 11
PDB header:metal binding protein
Chain: A: PDB Molecule:cation-transporting atpase, e1-e2 family protein;
PDBTitle: crystal structure of the metal binding domain (mbd) of the2 streptococcus pneumoniae d39 cu(i) exporting p-type atpase copa with3 cu(i)
27c2mm5A_
not modelled 12.8 24
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:alpha amylase alstotide s4;
PDBTitle: solution structure of alpha-amylase inhibitor peptide as4 from2 allatide scholaris
28c6iczZ_
not modelled 12.5 42
PDB header:splicing
Chain: Z: PDB Molecule:pre-mrna-splicing factor slu7;
PDBTitle: cryo-em structure of a human post-catalytic spliceosome (p complex) at2 3.0 angstrom
29d1isua_
not modelled 12.5 27
Fold:HIPIP (high potential iron protein)
Superfamily:HIPIP (high potential iron protein)
Family:HIPIP (high potential iron protein)
30c4bffK_
not modelled 12.3 15
PDB header:oxidoreductase
Chain: K: PDB Molecule:superoxide reductase;
PDBTitle: superoxide reductase (neelaredoxin) from archaeoglobus2 fulgidus in the reduced form
31c4g6xA_
not modelled 12.0 4
PDB header:oxidoreductase
Chain: A: PDB Molecule:glyoxalase/bleomycin resistance protein/dioxygenase;
PDBTitle: crystal structure of glyoxalase/bleomycin resistance protein from2 catenulispora acidiphila.
32c5umwA_
not modelled 11.5 13
PDB header:tiancimycin-binding protein
Chain: A: PDB Molecule:glyoxalase/bleomycin resisance protein/dioxygenase;
PDBTitle: crystal structure of tnms2, an antibiotic binding protein from2 streptomyces sp. cb03234
33c4rdmB_
not modelled 11.4 23
PDB header:hydrolase/dna
Chain: B: PDB Molecule:restriction endonuclease r.ngovii;
PDBTitle: crystal structure of r.ngoavii restriction endonuclease b3 domain with2 cognate dna
34d1zvpa1
not modelled 11.0 15
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:VC0802-like
35c3m1uB_
not modelled 10.6 20
PDB header:hydrolase
Chain: B: PDB Molecule:putative gamma-d-glutamyl-l-diamino acid endopeptidase;
PDBTitle: crystal structure of a putative gamma-d-glutamyl-l-diamino acid2 endopeptidase (dvu_0896) from desulfovibrio vulgaris hildenborough at3 1.75 a resolution
36c2mm6A_
not modelled 10.4 40
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:alpha amylase alstotide s1;
PDBTitle: solution structure of alpha amylase inhibitor peptide as1 from2 allatide scholaris
37d1nh2d2
not modelled 10.3 40
Fold:Transcription factor IIA (TFIIA), beta-barrel domain
Superfamily:Transcription factor IIA (TFIIA), beta-barrel domain
Family:Transcription factor IIA (TFIIA), beta-barrel domain
38c4bk8A_
not modelled 10.2 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:desulfoferrodoxin, ferrous iron-binding region;
PDBTitle: superoxide reductase (neelaredoxin) from ignicoccus2 hospitalis
39c4r11D_
not modelled 9.9 33
PDB header:cell adhesion/protein binding
Chain: D: PDB Molecule:cadherin-related hmr-1;
PDBTitle: a conserved phosphorylation switch controls the interaction between2 cadherin and beta-catenin in vitro and in vivo
40d1okia1
not modelled 9.6 8
Fold:gamma-Crystallin-like
Superfamily:gamma-Crystallin-like
Family:Crystallins/Ca-binding development proteins
41d1kyaa2
not modelled 9.6 8
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
42d1djrd_
not modelled 9.5 20
Fold:OB-fold
Superfamily:Bacterial enterotoxins
Family:Bacterial AB5 toxins, B-subunits
43c5gyyB_
not modelled 9.4 39
PDB header:plant protein
Chain: B: PDB Molecule:s-receptor kinase srk9;
PDBTitle: plant receptor complex
44c4iagA_
not modelled 9.1 30
PDB header:zorbamycin binding protein
Chain: A: PDB Molecule:zbm binding protein;
PDBTitle: crystal structure of zbma, the zorbamycin binding protein from2 streptomyces flavoviridis
45c5b4sA_
not modelled 8.7 55
PDB header:hydrolase
Chain: A: PDB Molecule:chitosanase;
PDBTitle: crystal structure of gh80 chitosanase from mitsuaria chitosanitabida
46c3rx9A_
not modelled 8.7 9
PDB header:lipid binding protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: 3d structure of scin from an escherichia coli patotype
47c6e5cA_
not modelled 8.6 22
PDB header:de novo protein
Chain: A: PDB Molecule:de novo beta protein;
PDBTitle: solution nmr structure of a de novo designed double-stranded beta-2 helix
48d1nvpd2
not modelled 8.5 40
Fold:Transcription factor IIA (TFIIA), beta-barrel domain
Superfamily:Transcription factor IIA (TFIIA), beta-barrel domain
Family:Transcription factor IIA (TFIIA), beta-barrel domain
49c3u22B_
not modelled 8.3 12
PDB header:heme binding protein
Chain: B: PDB Molecule:putative hmuy_like heme binding protein;
PDBTitle: crystal structure of a putative hmuy_like heme binding protein2 (bvu_2192) from bacteroides vulgatus atcc 8482 at 2.12 a resolution
50c2p28A_
not modelled 8.2 13
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin beta-2;
PDBTitle: structure of the phe2 and phe3 fragments of the integrin beta2 subunit
51c4bjiA_
not modelled 8.0 40
PDB header:dna binding protein
Chain: A: PDB Molecule:transcription factor tau subunit sfc1;
PDBTitle: sfc1-dbd
52c3rheA_
not modelled 7.8 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:nad-dependent benzaldehyde dehydrogenase;
PDBTitle: the crystal structure of nad-dependent benzaldehyde dehydrogenase from2 legionella pneumophila
53c2kjzA_
not modelled 7.7 7
PDB header:unknown function
Chain: A: PDB Molecule:atc0852;
PDBTitle: solution nmr structure of protein atc0852 from agrobacterium2 tumefaciens. northeast structural genomics consortium (nesg) target3 att2.
54d1vzia1
not modelled 7.5 24
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Superoxide reductase-like
Family:Superoxide reductase-like
55d2h8pc1
not modelled 7.4 24
Fold:Voltage-gated potassium channels
Superfamily:Voltage-gated potassium channels
Family:Voltage-gated potassium channels
56c2yhgA_
not modelled 7.3 11
PDB header:hydrolase
Chain: A: PDB Molecule:cellulose-binding protein;
PDBTitle: ab initio phasing of a nucleoside hydrolase-related hypothetical2 protein from saccharophagus degradans that is associated with3 carbohydrate metabolism
57c5uhjA_
not modelled 7.2 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:glyoxalase/bleomycin resisance protein/dioxygenase;
PDBTitle: the crystal structure of a natural product biosynthetic enzyme from2 streptomyces sp. cb03234
58c3mk7F_
not modelled 7.1 0
PDB header:oxidoreductase
Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p;
PDBTitle: the structure of cbb3 cytochrome oxidase
59c5k21C_
not modelled 7.0 20
PDB header:oxidoreductase
Chain: C: PDB Molecule:pyocyanin demethylase;
PDBTitle: pyocyanin demethylase
60d1mpya2
not modelled 6.9 14
Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family:Extradiol dioxygenases
61c5ikuA_
not modelled 6.7 8
PDB header:protein binding
Chain: A: PDB Molecule:collagenase;
PDBTitle: crystal structure of the clostridium histolyticum colg tandem2 collagen-binding domain s3as3b in the presence of calcium at 1.93 angstrom resolution
62c5k26A_
not modelled 6.6 24
PDB header:transferase
Chain: A: PDB Molecule:mitogen-activated protein kinase kinase kinase 11,chimera
PDBTitle: structure of the sh3 domain of mlk3 bound to peptide generated from2 phage display
63c2zouB_
not modelled 6.6 21
PDB header:cell adhesion
Chain: B: PDB Molecule:spondin-1;
PDBTitle: crystal structure of human f-spondin reeler domain (fragment 2)
64c1b5fD_
not modelled 6.4 23
PDB header:hydrolase
Chain: D: PDB Molecule:protein (cardosin a);
PDBTitle: native cardosin a from cynara cardunculus l.
65c3ossC_
not modelled 6.3 7
PDB header:protein transport
Chain: C: PDB Molecule:type 2 secretion system, gspc;
PDBTitle: the crystal structure of enterotoxigenic escherichia coli gspc-gspd2 complex from the type ii secretion system
66c6f0kA_
not modelled 6.3 17
PDB header:membrane protein
Chain: A: PDB Molecule:cytochrome c family protein;
PDBTitle: alternative complex iii
67c5ezdB_
not modelled 6.1 44
PDB header:hydrolase
Chain: B: PDB Molecule:kunitz-type protease inhibitor 1;
PDBTitle: crystal structure of a hepatocyte growth factor activator inhibitor-12 (hai-1) fragment covering the pkd-like 'internal' domain and kunitz3 domain 1
68c3n6yA_
not modelled 6.1 29
PDB header:unknown function
Chain: A: PDB Molecule:immunoglobulin-like protein;
PDBTitle: crystal structure of an immunoglobulin-like protein (pa1606) from2 pseudomonas aeruginosa at 1.50 a resolution
69c1okiB_
not modelled 6.1 8
PDB header:eye lens protein
Chain: B: PDB Molecule:beta crystallin b1;
PDBTitle: crystal structure of truncated human beta-b1-crystallin
70c3jqoV_
not modelled 6.0 15
PDB header:transport protein
Chain: V: PDB Molecule:traf protein;
PDBTitle: crystal structure of the outer membrane complex of a type iv secretion2 system
71d2cuab_
not modelled 6.0 9
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Periplasmic domain of cytochrome c oxidase subunit II
72c4bfhA_
not modelled 5.9 45
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:wrightide r1;
PDBTitle: crystal structure of alpha-amylase inhibitor wrightide r1 (wr1)2 peptide from wrightia religiosa
73c2mauA_
not modelled 5.9 45
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:wrightide r1;
PDBTitle: solution structure of alpha-amylase inhibitor wrightide r1 (wr1)2 peptide from wrightia religiosa
74c5tvzA_
not modelled 5.9 13
PDB header:transport protein
Chain: A: PDB Molecule:nucleoporin pom152;
PDBTitle: solution nmr structure of saccharomyces cerevisiae pom152 ig-like2 repeat, residues 718-820
75c5yi8B_
not modelled 5.9 19
PDB header:cell cycle
Chain: B: PDB Molecule:pon peptide from partner of numb;
PDBTitle: crystal structure of drosophila numb ptb domain and pon peptide2 complex
76c6cctA_
not modelled 5.9 17
PDB header:peptide binding protein
Chain: A: PDB Molecule:glucose-induced degradation protein 4 homolog;
PDBTitle: fragment of gid4 in complex with a short peptide
77c3h8tA_
not modelled 5.6 13
PDB header:heme-binding protein
Chain: A: PDB Molecule:hmuy;
PDBTitle: structure of porphyromonas gingivalis heme-binding protein hmuy in2 complex with heme
78d1qnia1
not modelled 5.6 14
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Nitrosocyanin
79c3g12A_
not modelled 5.6 9
PDB header:lyase
Chain: A: PDB Molecule:putative lactoylglutathione lyase;
PDBTitle: crystal structure of a putative lactoylglutathione lyase from2 bdellovibrio bacteriovorus
80c1vzhB_
not modelled 5.6 24
PDB header:oxidoreductase
Chain: B: PDB Molecule:desulfoferrodoxin;
PDBTitle: structure of superoxide reductase bound to ferrocyanide and active2 site expansion upon x-ray induced photoreduction
81d2fi9a1
not modelled 5.5 40
Fold:MTH938-like
Superfamily:MTH938-like
Family:MTH938-like
82c3zhnA_
not modelled 5.5 11
PDB header:toxin
Chain: A: PDB Molecule:pa_0080;
PDBTitle: crystal structure of the t6ss lipoprotein tssj1 from2 pseudomonas aeruginosa
83d1xrka_
not modelled 5.4 30
Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family:Antibiotic resistance proteins
84c3jvfC_
not modelled 5.3 30
PDB header:signaling protein / cytokine
Chain: C: PDB Molecule:interleukin-17 receptor a;
PDBTitle: crystal structure of an interleukin-17 receptor complex
85c6nbxG_
not modelled 5.3 19
PDB header:oxidoreductase
Chain: G: PDB Molecule:nadh-quinone oxidoreductase subunit j;
PDBTitle: t.elongatus ndh (data-set 2)
86c2hb5A_
not modelled 5.3 13
PDB header:hydrolase
Chain: A: PDB Molecule:reverse transcriptase/ribonuclease h;
PDBTitle: crystal structure of the moloney murine leukemia virus rnase h domain
87d1f1xa2
not modelled 5.2 21
Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family:Extradiol dioxygenases

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below