Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0876c_(-)_974294_975940
DateFri Jul 26 01:50:46 BST 2019
Unique Job ID80a7037c2859f858
SequenceMAPTPGRRTR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:58.926 Y:49.260 Z:60.252
Model (left) based on template c5aynA_
Top template information
PDB header:transport protein
Chain: A: PDB Molecule:solute carrier family 39 (iron-regulated transporter);
PDBTitle: crystal structure of a bacterial homologue of iron transporter2 ferroportin in outward-facing state
Confidence and coverage
Confidence: 99.9% Coverage: 71%
388 residues ( 71% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
463 residues ( 84%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5aynA_
99.9 15
PDB header:transport protein
Chain: A: PDB Molecule:solute carrier family 39 (iron-regulated transporter);
PDBTitle: crystal structure of a bacterial homologue of iron transporter2 ferroportin in outward-facing state
2c5aymA_
99.9 14
PDB header:transport protein
Chain: A: PDB Molecule:solute carrier family 39 (iron-regulated transporter);
PDBTitle: crystal structure of a bacterial homologue of iron transporter2 ferroportin in outward-facing state with soaked iron
3d1pw4a_
99.9 14
Fold:MFS general substrate transporter
Superfamily:MFS general substrate transporter
Family:Glycerol-3-phosphate transporter
4c3wdoA_
99.9 13
PDB header:transport protein
Chain: A: PDB Molecule:mfs transporter;
PDBTitle: structure of e. coli yajr transporter
5c4zp0A_
99.9 12
PDB header:transport protein
Chain: A: PDB Molecule:multidrug transporter mdfa;
PDBTitle: crystal structure of e. coli multidrug transporter mdfa in complex2 with deoxycholate
6c6e9oA_
99.8 12
PDB header:membrane protein
Chain: A: PDB Molecule:d-galactonate transport;
PDBTitle: e. coli d-galactonate:proton symporter mutant e133q in the outward2 substrate-bound form
7c1pv7B_
99.8 11
PDB header:transport protein
Chain: B: PDB Molecule:lactose permease;
PDBTitle: crystal structure of lactose permease with tdg
8d1pv7a_
99.8 11
Fold:MFS general substrate transporter
Superfamily:MFS general substrate transporter
Family:LacY-like proton/sugar symporter
9c4cl5B_
99.8 11
PDB header:transport protein
Chain: B: PDB Molecule:nitrate transporter 1.1;
PDBTitle: crystal structure of the nitrate transporter nrt1.1 from2 arabidopsis thaliana in complex with nitrate.
10c2gfpA_
99.8 10
PDB header:membrane protein
Chain: A: PDB Molecule:multidrug resistance protein d;
PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli
11c4ldsB_
99.8 11
PDB header:transport protein, membrane protein
Chain: B: PDB Molecule:bicyclomycin resistance protein tcab;
PDBTitle: the inward-facing structure of the glucose transporter from2 staphylococcus epidermidis
12c6g9xB_
99.8 11
PDB header:membrane protein
Chain: B: PDB Molecule:major facilitator superfamily mfs_1;
PDBTitle: crystal structure of a mfs transporter at 2.54 angstroem resolution
13c4j05A_
99.8 12
PDB header:transport protein
Chain: A: PDB Molecule:phosphate transporter;
PDBTitle: crystal structure of a eukaryotic phosphate transporter
14c3o7pA_
99.8 10
PDB header:transport protein
Chain: A: PDB Molecule:l-fucose-proton symporter;
PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a)
15c4ikyA_
99.7 8
PDB header:transport protein
Chain: A: PDB Molecule:di-tripeptide abc transporter (permease);
PDBTitle: crystal structure of peptide transporter pot (e310q mutant) in complex2 with sulfate
16c6h7dA_
99.7 12
PDB header:membrane protein
Chain: A: PDB Molecule:sugar transport protein 10;
PDBTitle: crystal structure of a. thaliana sugar transport protein 10 in complex2 with glucose in the outward occluded state
17c4apsB_
99.7 10
PDB header:transport protein
Chain: B: PDB Molecule:di-or tripeptide h+ symporter;
PDBTitle: crystal structure of a pot family peptide transporter in an inward2 open conformation.
18c6gs7A_
99.7 13
PDB header:membrane protein
Chain: A: PDB Molecule:dipeptide and tripeptide permease a;
PDBTitle: crystal structure of peptide transporter dtpa-nanobody in glycine2 buffer
19c4ybqB_
99.7 11
PDB header:transport protein/immune system
Chain: B: PDB Molecule:solute carrier family 2, facilitated glucose transporter
PDBTitle: rat glut5 with fv in the outward-open form
20c6exsA_
99.7 10
PDB header:membrane protein
Chain: A: PDB Molecule:peptide abc transporter permease;
PDBTitle: crystal structure of a pot family transporter in complex with2 thioalcohol conjugated peptide.
21c4w6vA_
not modelled 99.7 12
PDB header:transport protein
Chain: A: PDB Molecule:di-/tripeptide transporter;
PDBTitle: crystal structure of a peptide transporter from yersinia2 enterocolitica at 3 a resolution
22c4q65A_
not modelled 99.7 13
PDB header:transport protein
Chain: A: PDB Molecule:dipeptide permease d;
PDBTitle: structure of the e. coli peptide transporter ybgh
23c5c65A_
not modelled 99.7 8
PDB header:transport protein
Chain: A: PDB Molecule:solute carrier family 2, facilitated glucose transporter
PDBTitle: structure of the human glucose transporter glut3 / slc2a3
24c6ei3A_
not modelled 99.7 10
PDB header:membrane protein
Chain: A: PDB Molecule:proton-dependent oligopeptide transporter family protein;
PDBTitle: crystal structure of auto inhibited pot family peptide transporter
25c4pypA_
not modelled 99.6 10
PDB header:transport protein
Chain: A: PDB Molecule:solute carrier family 2, facilitated glucose transporter
PDBTitle: crystal structure of the human glucose transporter glut1
26c4gbzA_
not modelled 99.6 9
PDB header:transport protein
Chain: A: PDB Molecule:d-xylose-proton symporter;
PDBTitle: the structure of the mfs (major facilitator superfamily) proton:xylose2 symporter xyle bound to d-glucose
27c4iu8A_
not modelled 99.6 9
PDB header:transport protein
Chain: A: PDB Molecule:nitrite extrusion protein 2;
PDBTitle: crystal structure of a membrane transporter (selenomethionine2 derivative)
28c4lepB_
not modelled 99.5 10
PDB header:membrane protein, tranport protein
Chain: B: PDB Molecule:proton:oligopeptide symporter pot family;
PDBTitle: structural insights into substrate recognition in proton dependent2 oligopeptide transporters
29c2xutC_
not modelled 99.5 7
PDB header:transport protein
Chain: C: PDB Molecule:proton/peptide symporter family protein;
PDBTitle: crystal structure of a proton dependent oligopeptide (pot) family2 transporter.
30c4iu9A_
not modelled 99.5 9
PDB header:transport protein
Chain: A: PDB Molecule:nitrite extrusion protein 2;
PDBTitle: crystal structure of a membrane transporter
31c6ob7A_
not modelled 99.4 10
PDB header:transport protein
Chain: A: PDB Molecule:equilibrative nucleoside transporter 1;
PDBTitle: human equilibrative nucleoside transporter-1, dilazep bound
32c4m64D_
not modelled 99.3 14
PDB header:transport protein
Chain: D: PDB Molecule:melibiose carrier protein;
PDBTitle: 3d crystal structure of na+/melibiose symporter of salmonella2 typhimurium
33c3b9yA_
not modelled 32.0 9
PDB header:transport protein
Chain: A: PDB Molecule:ammonium transporter family rh-like protein;
PDBTitle: crystal structure of the nitrosomonas europaea rh protein
34c3ecqA_
not modelled 21.4 24
PDB header:hydrolase
Chain: A: PDB Molecule:endo-alpha-n-acetylgalactosaminidase;
PDBTitle: endo-alpha-n-acetylgalactosaminidase from streptococcus pneumoniae:2 semet structure
35c6bwaB_
not modelled 21.2 57
PDB header:transport protein
Chain: B: PDB Molecule:protein w;
PDBTitle: hendra virus w protein c-terminus in complex with importin alpha 32 crystal form 2
36c6bwbB_
not modelled 21.2 57
PDB header:transport protein
Chain: B: PDB Molecule:protein w;
PDBTitle: hendra virus w protein c-terminus in complex with importin alpha 32 crystal form 3
37c2zxqA_
not modelled 21.2 24
PDB header:hydrolase
Chain: A: PDB Molecule:endo-alpha-n-acetylgalactosaminidase;
PDBTitle: crystal structure of endo-alpha-n-acetylgalactosaminidase2 from bifidobacterium longum (engbf)
38c6nbxG_
not modelled 16.8 20
PDB header:oxidoreductase
Chain: G: PDB Molecule:nadh-quinone oxidoreductase subunit j;
PDBTitle: t.elongatus ndh (data-set 2)
39c5sxpF_
not modelled 14.7 44
PDB header:signaling protein/ligase
Chain: F: PDB Molecule:e3 ubiquitin-protein ligase itchy homolog;
PDBTitle: structural basis for the interaction between itch prr and beta-pix
40c4m0mA_
not modelled 13.6 32
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: the crystal structure of a functionally unknown protein lpg2422 from2 legionella pneumophila subsp. pneumophila str. philadelphia 1
41c2rqrA_
not modelled 13.5 9
PDB header:protein binding
Chain: A: PDB Molecule:engulfment and cell motility protein 1, linker, dedicator
PDBTitle: the solution structure of human dock2 sh3 domain - elmo1 peptide2 chimera complex
42c2f6aF_
not modelled 12.9 59
PDB header:cell adhesion/structural protein
Chain: F: PDB Molecule:collagen;
PDBTitle: collagen adhesin and collagen complex structure
43c2f6aG_
not modelled 12.9 59
PDB header:cell adhesion/structural protein
Chain: G: PDB Molecule:collagen;
PDBTitle: collagen adhesin and collagen complex structure
44c2f6aH_
not modelled 12.9 59
PDB header:cell adhesion/structural protein
Chain: H: PDB Molecule:collagen;
PDBTitle: collagen adhesin and collagen complex structure
45c2f6aE_
not modelled 12.9 59
PDB header:cell adhesion/structural protein
Chain: E: PDB Molecule:collagen;
PDBTitle: collagen adhesin and collagen complex structure
46c2f6aI_
not modelled 12.9 59
PDB header:cell adhesion/structural protein
Chain: I: PDB Molecule:collagen;
PDBTitle: collagen adhesin and collagen complex structure
47c3kikE_
not modelled 12.6 23
PDB header:transcription
Chain: E: PDB Molecule:saga-associated factor 11;
PDBTitle: sgf11:sus1 complex
48c3kikF_
not modelled 12.6 23
PDB header:transcription
Chain: F: PDB Molecule:saga-associated factor 11;
PDBTitle: sgf11:sus1 complex
49c3kikH_
not modelled 12.5 23
PDB header:transcription
Chain: H: PDB Molecule:saga-associated factor 11;
PDBTitle: sgf11:sus1 complex
50c3kikG_
not modelled 12.4 23
PDB header:transcription
Chain: G: PDB Molecule:saga-associated factor 11;
PDBTitle: sgf11:sus1 complex
51c2i5nH_
not modelled 12.2 20
PDB header:photosynthesis
Chain: H: PDB Molecule:reaction center protein h chain;
PDBTitle: 1.96 a x-ray structure of photosynthetic reaction center from2 rhodopseudomonas viridis:crystals grown by microfluidic technique
52c3kjlF_
not modelled 12.1 23
PDB header:transcription
Chain: F: PDB Molecule:saga-associated factor 11;
PDBTitle: sgf11:sus1 complex
53c2kr6A_
not modelled 11.8 11
PDB header:hydrolase
Chain: A: PDB Molecule:presenilin-1;
PDBTitle: solution structure of presenilin-1 ctf subunit
54c3kjlH_
not modelled 11.4 23
PDB header:transcription
Chain: H: PDB Molecule:saga-associated factor 11;
PDBTitle: sgf11:sus1 complex
55c3kjlE_
not modelled 11.4 23
PDB header:transcription
Chain: E: PDB Molecule:saga-associated factor 11;
PDBTitle: sgf11:sus1 complex
56c5sxpG_
not modelled 11.2 35
PDB header:signaling protein/ligase
Chain: G: PDB Molecule:e3 ubiquitin-protein ligase itchy homolog;
PDBTitle: structural basis for the interaction between itch prr and beta-pix
57c5wufA_
not modelled 11.0 14
PDB header:membrane protein
Chain: A: PDB Molecule:putative membrane protein;
PDBTitle: structural basis for conductance through tric cation channels
58c1wlpA_
not modelled 11.0 22
PDB header:oxidoreductase/signaling protein
Chain: A: PDB Molecule:cytochrome b-245 light chain;
PDBTitle: solution structure of the p22phox-p47phox complex
59c4auoF_
not modelled 11.0 36
PDB header:hydrolase/peptide
Chain: F: PDB Molecule:triple-helical collagen peptide;
PDBTitle: crystal structure of mmp-1(e200a) in complex with a triple-2 helical collagen peptide
60c4auoG_
not modelled 11.0 36
PDB header:hydrolase/peptide
Chain: G: PDB Molecule:triple-helical collagen peptide;
PDBTitle: crystal structure of mmp-1(e200a) in complex with a triple-2 helical collagen peptide
61c4auoD_
not modelled 11.0 36
PDB header:hydrolase/peptide
Chain: D: PDB Molecule:triple-helical collagen peptide;
PDBTitle: crystal structure of mmp-1(e200a) in complex with a triple-2 helical collagen peptide
62d1b8xa1
not modelled 10.8 24
Fold:GST C-terminal domain-like
Superfamily:GST C-terminal domain-like
Family:Glutathione S-transferase (GST), C-terminal domain
63c6fhsH_
not modelled 10.8 36
PDB header:dna binding protein
Chain: H: PDB Molecule:les2;
PDBTitle: cryoem structure of ino80core
64c3kjlG_
not modelled 10.7 25
PDB header:transcription
Chain: G: PDB Molecule:saga-associated factor 11;
PDBTitle: sgf11:sus1 complex
65c4auoC_
not modelled 10.7 33
PDB header:hydrolase/peptide
Chain: C: PDB Molecule:triple-helical collagen peptide;
PDBTitle: crystal structure of mmp-1(e200a) in complex with a triple-2 helical collagen peptide
66c5khnB_
not modelled 10.6 10
PDB header:membrane protein
Chain: B: PDB Molecule:rnd transporter;
PDBTitle: crystal structures of the burkholderia multivorans hopanoid2 transporter hpnn
67c4uk2H_
not modelled 10.4 33
PDB header:ribosome
Chain: H: PDB Molecule:suppressor protein stm1;
PDBTitle: crystal structure of anisomycin bound to the yeast 80s ribosome
68c6bvvB_
not modelled 10.2 36
PDB header:transport protein
Chain: B: PDB Molecule:protein w;
PDBTitle: nipah virus w protein c-terminus in complex with importin alpha 3
69d1jvra_
not modelled 10.2 29
Fold:Retroviral matrix proteins
Superfamily:Retroviral matrix proteins
Family:HTLV-II matrix protein
70c1eysH_
not modelled 10.0 19
PDB header:electron transport
Chain: H: PDB Molecule:photosynthetic reaction center;
PDBTitle: crystal structure of photosynthetic reaction center from a2 thermophilic bacterium, thermochromatium tepidum
71d1mhyd_
not modelled 10.0 17
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
72c4k0eC_
not modelled 9.8 8
PDB header:transport protein
Chain: C: PDB Molecule:heavy metal cation tricomponent efflux pump znea(czca-
PDBTitle: x-ray crystal structure of a heavy metal efflux pump, crystal form ii
73c3j0gO_
not modelled 9.7 25
PDB header:virus
Chain: O: PDB Molecule:e3 protein;
PDBTitle: homology model of e3 protein of venezuelan equine encephalitis virus2 tc-83 strain fitted with a cryo-em map
74c1z1lA_
not modelled 9.7 27
PDB header:hydrolase
Chain: A: PDB Molecule:cgmp-dependent 3',5'-cyclic phosphodiesterase;
PDBTitle: the crystal structure of the phosphodiesterase 2a catalytic2 domain
75c3u5gh_
not modelled 9.7 33
PDB header:ribosome
Chain: H: PDB Molecule:40s ribosomal protein s7-a;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 40s subunit, ribosome b
76c3v94F_
not modelled 9.6 36
PDB header:hydrolase/hydrolase inhibitor
Chain: F: PDB Molecule:cyclic nucleotide specific phosphodiesterase;
PDBTitle: tcrpdec1 catalytic domain in complex with inhibitor wyq16
77c4nl6C_
not modelled 9.6 10
PDB header:splicing
Chain: C: PDB Molecule:survival motor neuron protein;
PDBTitle: structure of the full-length form of the protein smn found in healthy2 patients
78d2h44a1
not modelled 9.6 27
Fold:HD-domain/PDEase-like
Superfamily:HD-domain/PDEase-like
Family:PDEase
79c2n24A_
not modelled 9.6 45
PDB header:toxin
Chain: A: PDB Molecule:o2_contryphan_vc1;
PDBTitle: solution nmr structure of contryphan-vc1
80c2y5tF_
not modelled 9.6 35
PDB header:immune system
Chain: F: PDB Molecule:c1;
PDBTitle: crystal structure of the pathogenic autoantibody ciic1 in complex with2 the triple-helical c1 peptide
81c4auoH_
not modelled 9.6 40
PDB header:hydrolase/peptide
Chain: H: PDB Molecule:triple-helical collagen peptide;
PDBTitle: crystal structure of mmp-1(e200a) in complex with a triple-2 helical collagen peptide
82c4auoE_
not modelled 9.6 40
PDB header:hydrolase/peptide
Chain: E: PDB Molecule:triple-helical collagen peptide;
PDBTitle: crystal structure of mmp-1(e200a) in complex with a triple-2 helical collagen peptide
83c6a0cB_
not modelled 9.6 48
PDB header:structural protein
Chain: B: PDB Molecule:collagen type iii peptide;
PDBTitle: structure of a triple-helix region of human collagen type iii
84c3hd6A_
not modelled 9.5 11
PDB header:membrane protein, transport protein
Chain: A: PDB Molecule:ammonium transporter rh type c;
PDBTitle: crystal structure of the human rhesus glycoprotein rhcg
85c2y94C_
not modelled 9.4 56
PDB header:transferase
Chain: C: PDB Molecule:5'-amp-activated protein kinase catalytic subunit alpha-1;
PDBTitle: structure of an active form of mammalian ampk
86c3qi4A_
not modelled 9.4 36
PDB header:hydrolase
Chain: A: PDB Molecule:high affinity cgmp-specific 3',5'-cyclic phosphodiesterase
PDBTitle: crystal structure of pde9a(q453e) in complex with ibmx
87c1ciiA_
not modelled 9.4 24
PDB header:transmembrane protein
Chain: A: PDB Molecule:colicin ia;
PDBTitle: colicin ia
88d3dy8a1
not modelled 9.3 36
Fold:HD-domain/PDEase-like
Superfamily:HD-domain/PDEase-like
Family:PDEase
89c5vydB_
not modelled 9.3 30
PDB header:hydrolase
Chain: B: PDB Molecule:phosphodiesterase;
PDBTitle: crystal structure of phosphodiesterase domain of rhopde fusion protein2 from the choanoflagellate salpingoeca rosetta
90c6immi_
not modelled 9.2 0
PDB header:virus
Chain: I: PDB Molecule:
PDBTitle: cryo-em structure of an alphavirus, sindbis virus
91c2l2iB_
not modelled 9.2 36
PDB header:transcription
Chain: B: PDB Molecule:krueppel-like factor 1;
PDBTitle: nmr structure of the complex between the tfb1 subunit of tfiih and the2 activation domain of eklf
92c4dveA_
not modelled 9.2 8
PDB header:transport protein
Chain: A: PDB Molecule:biotin transporter bioy;
PDBTitle: crystal structure at 2.1 a of the s-component for biotin from an ecf-2 type abc transporter
93c4x0fA_
not modelled 9.2 40
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:camp-specific 3',5'-cyclic phosphodiesterase 4b;
PDBTitle: crystal structure of crosslink stabilized long-form pde4b in complex2 with (r)-(-)-rolipram
94c6a0cC_
not modelled 9.1 48
PDB header:structural protein
Chain: C: PDB Molecule:collagen type iii peptide;
PDBTitle: structure of a triple-helix region of human collagen type iii
95c6a0cA_
not modelled 9.1 48
PDB header:structural protein
Chain: A: PDB Molecule:collagen type iii peptide;
PDBTitle: structure of a triple-helix region of human collagen type iii
96c5nf2A_
not modelled 9.1 18
PDB header:cell adhesion
Chain: A: PDB Molecule:minor fimbrium subunit mfa1;
PDBTitle: the fimbrial shaft protein mfa1 from porphyromonas gingivalis
97c1zklA_
not modelled 9.0 27
PDB header:hydrolase
Chain: A: PDB Molecule:high-affinity camp-specific 3',5'-cyclic
PDBTitle: multiple determinants for inhibitor selectivity of cyclic2 nucleotide phosphodiesterases
98c2kdcC_
not modelled 8.9 14
PDB header:transferase
Chain: C: PDB Molecule:diacylglycerol kinase;
PDBTitle: nmr solution structure of e. coli diacylglycerol kinase2 (dagk) in dpc micelles
99c6cpuA_
not modelled 8.9 55
PDB header:hydrolase
Chain: A: PDB Molecule:phosphodiesterase;
PDBTitle: crystal structure of yeast capde2

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Transmembrane helix prediction 

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