Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0877_(-)_976078_976866
DateFri Jul 26 01:50:46 BST 2019
Unique Job ID451e6f3d5362cc95
SequenceVTGPTEESAV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:29.883 Y:26.209 Z:38.717
Model (left) based on template c3d0fA_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:penicillin-binding 1 transmembrane protein mrca;
PDBTitle: structure of the big_1156.2 domain of putative penicillin-binding2 protein mrca from nitrosomonas europaea atcc 19718
Confidence and coverage
Confidence: 56.4% Coverage: 21%
55 residues ( 21% of your sequence) have been modelled with 56.4% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3d0fA_
56.4 27
PDB header:transferase
Chain: A: PDB Molecule:penicillin-binding 1 transmembrane protein mrca;
PDBTitle: structure of the big_1156.2 domain of putative penicillin-binding2 protein mrca from nitrosomonas europaea atcc 19718
2d1js2a_
50.0 17
Fold:HIPIP (high potential iron protein)
Superfamily:HIPIP (high potential iron protein)
Family:HIPIP (high potential iron protein)
3c4d0mW_
41.7 27
PDB header:signaling protein
Chain: W: PDB Molecule:phosphatidylinositol 4-kinase beta;
PDBTitle: phosphatidylinositol 4-kinase iii beta in a complex with rab11a-gtp-2 gamma-s and the rab-binding domain of fip3
4d1b0ya_
40.2 22
Fold:HIPIP (high potential iron protein)
Superfamily:HIPIP (high potential iron protein)
Family:HIPIP (high potential iron protein)
5c6e7aY_
38.2 17
PDB header:dna binding protein/dna/rna
Chain: Y: PDB Molecule:casx;
PDBTitle: casx-grna-dna(30bp) state ii
6c3csqC_
32.9 14
PDB header:hydrolase
Chain: C: PDB Molecule:morphogenesis protein 1;
PDBTitle: crystal and cryoem structural studies of a cell wall2 degrading enzyme in the bacteriophage phi29 tail
7c3ls8A_
30.1 18
PDB header:transferase
Chain: A: PDB Molecule:phosphatidylinositol 3-kinase catalytic subunit
PDBTitle: crystal structure of human pik3c3 in complex with 3-[4-(4-2 morpholinyl)thieno[3,2-d]pyrimidin-2-yl]-phenol
8c3h31A_
30.0 20
PDB header:electron transport
Chain: A: PDB Molecule:high potential iron-sulfur protein;
PDBTitle: structure of rhodothermus marinus hipip at 1.0 a resolution
9d1e7ua4
29.7 18
Fold:Protein kinase-like (PK-like)
Superfamily:Protein kinase-like (PK-like)
Family:Phoshoinositide 3-kinase (PI3K), catalytic domain
10d1hlqa_
28.9 24
Fold:HIPIP (high potential iron protein)
Superfamily:HIPIP (high potential iron protein)
Family:HIPIP (high potential iron protein)
11d1ckqa_
28.2 32
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Restriction endonuclease EcoRI
12c2wanA_
28.2 25
PDB header:hydrolase
Chain: A: PDB Molecule:pullulanase;
PDBTitle: pullulanase from bacillus acidopullulyticus
13c2x6kB_
27.7 18
PDB header:transferase
Chain: B: PDB Molecule:phosphotidylinositol 3 kinase 59f;
PDBTitle: the crystal structure of the drosophila class iii pi3-kinase vps34 in2 complex with pi-103
14c2aklA_
26.6 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:phna-like protein pa0128;
PDBTitle: solution structure for phn-a like protein pa0128 from2 pseudomonas aeruginosa
15d4znfa_
25.8 29
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
16c3znfA_
25.8 29
PDB header:zinc finger dna binding domain
Chain: A: PDB Molecule:zinc finger;
PDBTitle: high-resolution three-dimensional structure of a single2 zinc finger from a human enhancer binding protein in3 solution
17c4znfA_
25.8 29
PDB header:zinc finger dna binding domain
Chain: A: PDB Molecule:zinc finger;
PDBTitle: high-resolution three-dimensional structure of a single2 zinc finger from a human enhancer binding protein in3 solution
18d3hipa_
25.0 19
Fold:HIPIP (high potential iron protein)
Superfamily:HIPIP (high potential iron protein)
Family:HIPIP (high potential iron protein)
19c2lxwA_
23.8 60
PDB header:apoptosis
Chain: A: PDB Molecule:xiap-associated factor 1;
PDBTitle: the solution structure of xiap(ring)-binding domain of human xaf1
20d1dkca_
23.6 36
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Gurmarin-like
Family:Antifungal peptide
21c5dfzC_
not modelled 22.9 27
PDB header:transferase
Chain: C: PDB Molecule:phosphatidylinositol 3-kinase vps34;
PDBTitle: structure of vps34 complex ii from s. cerevisiae.
22d2akla2
not modelled 22.2 17
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:PhnA zinc-binding domain
23d2gmga1
not modelled 22.0 50
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:PF0610-like
24c4av1C_
not modelled 19.9 27
PDB header:transferase
Chain: C: PDB Molecule:poly [adp-ribose] polymerase 1;
PDBTitle: crystal structure of the human parp-1 dna binding domain in2 complex with dna
25c1vzhB_
not modelled 19.2 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:desulfoferrodoxin;
PDBTitle: structure of superoxide reductase bound to ferrocyanide and active2 site expansion upon x-ray induced photoreduction
26c3j3v0_
not modelled 19.0 32
PDB header:ribosome
Chain: 0: PDB Molecule:50s ribosomal protein l32;
PDBTitle: atomic model of the immature 50s subunit from bacillus subtilis (state2 i-a)
27d1hpia_
not modelled 19.0 20
Fold:HIPIP (high potential iron protein)
Superfamily:HIPIP (high potential iron protein)
Family:HIPIP (high potential iron protein)
28d2j0151
not modelled 18.5 26
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L32p
29d2zjrz1
not modelled 17.9 21
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L32p
30d1isua_
not modelled 17.9 40
Fold:HIPIP (high potential iron protein)
Superfamily:HIPIP (high potential iron protein)
Family:HIPIP (high potential iron protein)
31c2y3aA_
not modelled 17.9 14
PDB header:transferase
Chain: A: PDB Molecule:phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic
PDBTitle: crystal structure of p110beta in complex with icsh2 of p85beta and the2 drug gdc-0941
32c3rx9A_
not modelled 17.3 22
PDB header:lipid binding protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: 3d structure of scin from an escherichia coli patotype
33c5yz0A_
not modelled 17.3 30
PDB header:cell cycle
Chain: A: PDB Molecule:serine/threonine-protein kinase atr;
PDBTitle: cryo-em structure of human atr-atrip complex
34d2k4xa1
not modelled 17.3 42
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein S27a
35c1sxjB_
not modelled 17.1 42
PDB header:replication
Chain: B: PDB Molecule:activator 1 37 kda subunit;
PDBTitle: crystal structure of the eukaryotic clamp loader (replication factor2 c, rfc) bound to the dna sliding clamp (proliferating cell nuclear3 antigen, pcna)
36c4jspA_
not modelled 17.0 20
PDB header:transferase
Chain: A: PDB Molecule:serine/threonine-protein kinase mtor;
PDBTitle: structure of mtordeltan-mlst8-atpgammas-mg complex
37c3tkaA_
not modelled 16.9 44
PDB header:transferase
Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase h;
PDBTitle: crystal structure and solution saxs of methyltransferase rsmh from2 e.coli
38c2wxoA_
not modelled 16.9 13
PDB header:transferase
Chain: A: PDB Molecule:phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic
PDBTitle: the crystal structure of the murine class ia pi 3-kinase p110delta in2 complex with as5.
39c3tu8A_
not modelled 16.7 53
PDB header:unknown function
Chain: A: PDB Molecule:burkholderia lethal factor 1 (blf1);
PDBTitle: crystal structure of the burkholderia lethal factor 1 (blf1)
40c3fhdA_
not modelled 16.6 25
PDB header:hydrolase
Chain: A: PDB Molecule:orf 37;
PDBTitle: crystal structure of the shutoff and exonuclease protein from kaposis2 sarcoma associated herpesvirus
41c5h64a_
not modelled 16.2 20
PDB header:transferase
Chain: A: PDB Molecule:serine/threonine-protein kinase mtor;
PDBTitle: cryo-em structure of mtorc1
42c1wg8B_
not modelled 16.1 31
PDB header:transferase
Chain: B: PDB Molecule:predicted s-adenosylmethionine-dependent
PDBTitle: crystal structure of a predicted s-adenosylmethionine-2 dependent methyltransferase tt1512 from thermus3 thermophilus hb8.
43d1qf8a_
not modelled 16.1 32
Fold:Rubredoxin-like
Superfamily:Casein kinase II beta subunit
Family:Casein kinase II beta subunit
44d1iuaa_
not modelled 15.9 19
Fold:HIPIP (high potential iron protein)
Superfamily:HIPIP (high potential iron protein)
Family:HIPIP (high potential iron protein)
45d2hipa_
not modelled 15.7 18
Fold:HIPIP (high potential iron protein)
Superfamily:HIPIP (high potential iron protein)
Family:HIPIP (high potential iron protein)
46c5x51X_
not modelled 15.1 21
PDB header:transferase
Chain: X: PDB Molecule:rna polymerase subunit, found in rna polymerase complexes
PDBTitle: rna polymerase ii from komagataella pastoris (type-3 crystal)
47c2ja6L_
not modelled 15.1 21
PDB header:transferase
Chain: L: PDB Molecule:dna-directed rna polymerases i, ii, and iii 7.7 kda
PDBTitle: cpd lesion containing rna polymerase ii elongation complex b
48c5cm2Z_
not modelled 15.0 20
PDB header:transferase
Chain: Z: PDB Molecule:trna methyltransferase;
PDBTitle: insights into molecular plasticity in protein complexes from trm9-2 trm112 trna modifying enzyme crystal structure
49d2d8xa2
not modelled 14.9 27
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
50c5is5A_
not modelled 14.8 18
PDB header:transferase
Chain: A: PDB Molecule:phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic
PDBTitle: discovery and pharmacological characterization of novel quinazoline-2 based pi3k delta-selective inhibitors
51c2uzhB_
not modelled 14.7 20
PDB header:lyase
Chain: B: PDB Molecule:2c-methyl-d-erythritol 2,4-cyclodiphosphate
PDBTitle: mycobacterium smegmatis 2c-methyl-d-erythritol-2,4-2 cyclodiphosphate synthase (ispf)
52c5dxuA_
not modelled 14.7 14
PDB header:transferase/inhibitor
Chain: A: PDB Molecule:phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic
PDBTitle: p110delta/p85alpha with gdc-0326
53c3h0gL_
not modelled 14.4 27
PDB header:transcription
Chain: L: PDB Molecule:dna-directed rna polymerases i, ii, and iii subunit rpabc4;
PDBTitle: rna polymerase ii from schizosaccharomyces pombe
54c5zcsB_
not modelled 14.3 20
PDB header:gene regulation
Chain: B: PDB Molecule:serine/threonine-protein kinase mtor;
PDBTitle: 4.9 angstrom cryo-em structure of human mtor complex 2
55d1twfj_
not modelled 14.3 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:RNA polymerase subunit RPB10
Family:RNA polymerase subunit RPB10
56c3odeA_
not modelled 14.1 19
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:poly [adp-ribose] polymerase 1;
PDBTitle: human parp-1 zinc finger 2 (zn2) bound to dna
57d2j4wd1
not modelled 14.0 29
Fold:Apical membrane antigen 1
Superfamily:Apical membrane antigen 1
Family:Apical membrane antigen 1
58c2j4wD_
not modelled 14.0 29
PDB header:immune system
Chain: D: PDB Molecule:apical membrane antigen 1;
PDBTitle: structure of a plasmodium vivax apical membrane antigen 1-2 fab f8.12.19 complex
59c3vpbF_
not modelled 13.9 35
PDB header:ligase
Chain: F: PDB Molecule:alpha-aminoadipate carrier protein lysw;
PDBTitle: argx from sulfolobus tokodaii complexed with2 lysw/glu/adp/mg/zn/sulfate
60c2rd0A_
not modelled 13.9 21
PDB header:transferase/oncoprotein
Chain: A: PDB Molecule:phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic
PDBTitle: structure of a human p110alpha/p85alpha complex
61c2w45A_
not modelled 13.8 27
PDB header:hydrolase
Chain: A: PDB Molecule:alkaline exonuclease;
PDBTitle: epstein-barr virus alkaline nuclease
62c4yknA_
not modelled 13.6 21
PDB header:transferase/transferase inhibitor
Chain: A: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit alpha,
PDBTitle: pi3k alpha lipid kinase with active site inhibitor
63d1yzha1
not modelled 13.5 19
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:TrmB-like
64d1iqca2
not modelled 13.5 20
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Di-heme cytochrome c peroxidase
65c2zkr2_
not modelled 13.4 36
PDB header:ribosomal protein/rna
Chain: 2: PDB Molecule:60s ribosomal protein l37e;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
66c3jywY_
not modelled 13.4 36
PDB header:ribosome
Chain: Y: PDB Molecule:60s ribosomal protein l37(a);
PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution
67c1s1iY_
not modelled 13.0 36
PDB header:ribosome
Chain: Y: PDB Molecule:60s ribosomal protein l37-a;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1i, contains 60s subunit. the 40s4 ribosomal subunit is in file 1s1h.
68c5flmL_
not modelled 12.6 21
PDB header:transcription
Chain: L: PDB Molecule:dna-directed rna polymerases i, ii, and iii subunit rpabc4;
PDBTitle: structure of transcribing mammalian rna polymerase ii
69d1jwhc_
not modelled 12.5 32
Fold:Rubredoxin-like
Superfamily:Casein kinase II beta subunit
Family:Casein kinase II beta subunit
70c1m6yA_
not modelled 12.5 31
PDB header:transferase
Chain: A: PDB Molecule:s-adenosyl-methyltransferase mraw;
PDBTitle: crystal structure analysis of tm0872, a putative sam-dependent2 methyltransferase, complexed with sah
71c6ba3A_
not modelled 12.4 32
PDB header:toxin
Chain: A: PDB Molecule:u21-hexatoxin-hi1a;
PDBTitle: nmr structure of u21-hexatoxin-hi1a toxin from australian funnel-web2 spider hadronyche infensa
72c5ivaB_
not modelled 12.4 31
PDB header:transport protein
Chain: B: PDB Molecule:lps-assembly lipoprotein lpte;
PDBTitle: the lps transporter lptde from pseudomonas aeruginosa, core complex
73c2kaeA_
not modelled 12.3 15
PDB header:transcription/dna
Chain: A: PDB Molecule:gata-type transcription factor;
PDBTitle: data-driven model of med1:dna complex
74c2dmjA_
not modelled 12.3 27
PDB header:transferase
Chain: A: PDB Molecule:poly (adp-ribose) polymerase family, member 1;
PDBTitle: solution structure of the first zf-parp domain of human2 poly(adp-ribose)polymerase-1
75c1e8zA_
not modelled 12.3 14
PDB header:transferase
Chain: A: PDB Molecule:phosphatidylinositol 3-kinase catalytic subunit;
PDBTitle: structure determinants of phosphoinositide 3-kinase2 inhibition by wortmannin, ly294002, quercetin, myricetin3 and staurosporine
76c5np1A_
not modelled 12.2 20
PDB header:transferase
Chain: A: PDB Molecule:serine-protein kinase atm;
PDBTitle: open protomer of human atm (ataxia telangiectasia mutated)
77c2hntC_
not modelled 12.2 26
PDB header:serine protease
Chain: C: PDB Molecule:gamma-thrombin;
PDBTitle: crystallographic structure of human gamma-thrombin
78c2f9iD_
not modelled 12.1 31
PDB header:transferase
Chain: D: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl transferase subunit
PDBTitle: crystal structure of the carboxyltransferase subunit of acc from2 staphylococcus aureus
79c2lzoA_
not modelled 11.7 58
PDB header:toxin
Chain: A: PDB Molecule:ugtx;
PDBTitle: spatial structure of pi-anmtx ugr 9a-1
80c5fvmB_
not modelled 11.7 40
PDB header:transferase
Chain: B: PDB Molecule:serine/threonine-protein kinase tor2;
PDBTitle: cryo electron microscopy of a complex of tor and lst8
81c1e2xA_
not modelled 11.5 18
PDB header:transcriptional regulation
Chain: A: PDB Molecule:fatty acid metabolism regulator protein;
PDBTitle: fadr, fatty acid responsive transcription factor from e.2 coli
82c3j21e_
not modelled 11.5 45
PDB header:ribosome
Chain: E: PDB Molecule:50s ribosomal protein l5p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
83d1vqo11
not modelled 11.4 55
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L37e
84d1nmla2
not modelled 11.4 20
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Di-heme cytochrome c peroxidase
85c1sxjD_
not modelled 11.1 45
PDB header:replication
Chain: D: PDB Molecule:activator 1 41 kda subunit;
PDBTitle: crystal structure of the eukaryotic clamp loader (replication factor2 c, rfc) bound to the dna sliding clamp (proliferating cell nuclear3 antigen, pcna)
86c3ongA_
not modelled 11.1 29
PDB header:ligase
Chain: A: PDB Molecule:ubiquitin-activating enzyme e1-like;
PDBTitle: crystal structure of uba2ufd-ubc9: insights into e1-e2 interactions in2 sumo pathways
87c5x6oC_
not modelled 11.0 30
PDB header:transferase/dna binding protein
Chain: C: PDB Molecule:serine/threonine-protein kinase mec1;
PDBTitle: intact atr/mec1-atrip/ddc2 complex
88d1zwya1
not modelled 10.9 34
Fold:Anticodon-binding domain-like
Superfamily:ITPase-like
Family:YjjX-like
89d1gnfa_
not modelled 10.8 22
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Erythroid transcription factor GATA-1
90d2vuti1
not modelled 10.6 36
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Erythroid transcription factor GATA-1
91d1gk8a1
not modelled 10.5 12
Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
92d2f9yb1
not modelled 10.3 33
Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Biotin dependent carboxylase carboxyltransferase domain
93c2f9yB_
not modelled 10.3 33
PDB header:ligase
Chain: B: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl transferase subunit
PDBTitle: the crystal structure of the carboxyltransferase subunit of acc from2 escherichia coli
94d1vhib_
not modelled 10.3 23
Fold:Ferredoxin-like
Superfamily:Viral DNA-binding domain
Family:Viral DNA-binding domain
95c3zf7n_
not modelled 10.3 18
PDB header:ribosome
Chain: N: PDB Molecule:60s ribosomal protein l13;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
96c2kzyA_
not modelled 10.3 33
PDB header:metal binding protein
Chain: A: PDB Molecule:zfand5 protein (zinc finger protein 216 (predicted),
PDBTitle: solution nmr structure of the znf216 a20 zinc finger
97d1yuja_
not modelled 10.2 19
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
98c6ghcA_
not modelled 10.1 25
PDB header:hydrolase
Chain: A: PDB Molecule:5-methylcytosine-specific restriction enzyme a;
PDBTitle: modification dependent ecokmcra restriction endonuclease
99d1vlma_
not modelled 10.0 27
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:UbiE/COQ5-like

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