Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0882_(-)_980228_980512
DateFri Jul 26 01:50:47 BST 2019
Unique Job ID6e67e35fdada80ec
SequenceVNDQRDQAVP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:14.303 Y:15.923 Z:15.628
Model (left) based on template c1v0dA_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:dna fragmentation factor 40 kda subunit;
PDBTitle: crystal structure of caspase-activated dnase (cad)
Confidence and coverage
Confidence: 26.5% Coverage: 14%
13 residues ( 14% of your sequence) have been modelled with 26.5% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1v0dA_



26.5 38
PDB header:hydrolase
Chain: A: PDB Molecule:dna fragmentation factor 40 kda subunit;
PDBTitle: crystal structure of caspase-activated dnase (cad)
2d1v0da_



26.5 38
Fold:His-Me finger endonucleases
Superfamily:His-Me finger endonucleases
Family:Caspase-activated DNase, CAD (DffB, DFF40)
3c1z8yL_



23.1 48
PDB header:virus
Chain: L: PDB Molecule:spike glycoprotein e2;
PDBTitle: mapping the e2 glycoprotein of alphaviruses
4c1z8yJ_



23.1 48
PDB header:virus
Chain: J: PDB Molecule:spike glycoprotein e2;
PDBTitle: mapping the e2 glycoprotein of alphaviruses
5c1z8yN_



23.1 48
PDB header:virus
Chain: N: PDB Molecule:spike glycoprotein e2;
PDBTitle: mapping the e2 glycoprotein of alphaviruses
6c1z8yP_



23.1 48
PDB header:virus
Chain: P: PDB Molecule:spike glycoprotein e2;
PDBTitle: mapping the e2 glycoprotein of alphaviruses
7c1m57H_



21.4 19
PDB header:oxidoreductase
Chain: H: PDB Molecule:cytochrome c oxidase;
PDBTitle: structure of cytochrome c oxidase from rhodobacter2 sphaeroides (eq(i-286) mutant))
8c6hu9n_



9.4 13
PDB header:oxidoreductase/electron transport
Chain: N: PDB Molecule:cytochrome b;
PDBTitle: iii2-iv2 mitochondrial respiratory supercomplex from s. cerevisiae
9c5tfyJ_



7.7 35
PDB header:cell adhesion
Chain: J: PDB Molecule:flagellin;
PDBTitle: the archaeal flagellum of methanospirillum hungatei strain jf1.
10c2rngA_



6.8 19
PDB header:antimicrobial protein
Chain: A: PDB Molecule:big defensin;
PDBTitle: solution structure of big defensin
11c6f46A_



6.5 46
PDB header:apoptosis
Chain: A: PDB Molecule:bcl-2-like protein 1;
PDBTitle: structure of the transmembrane helix of bclxl in phospholipid2 nanodiscs
12d1vjja4



6.4 25
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Transglutaminase core
13d1uoua3



5.7 23
Fold:alpha/beta-Hammerhead
Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain
Family:Pyrimidine nucleoside phosphorylase C-terminal domain
14c5lnkW_



5.5 32
PDB header:oxidoreductase
Chain: W: PDB Molecule:mitochondrial complex i, sgdh subunit;
PDBTitle: entire ovine respiratory complex i
15d2tpta3



5.5 38
Fold:alpha/beta-Hammerhead
Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain
Family:Pyrimidine nucleoside phosphorylase C-terminal domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below