Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0889c_(citA)_988743_989864
DateFri Jul 26 01:50:48 BST 2019
Unique Job ID438251d813eedd17
SequenceMTVVPENFVP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:59.264 Y:75.586 Z:61.920
Model (left) based on template c2h12C_
Top template information
PDB header:transferase
Chain: C: PDB Molecule:citrate synthase;
PDBTitle: structure of acetobacter aceti citrate synthase complexed with2 oxaloacetate and carboxymethyldethia coenzyme a (cmx)
Confidence and coverage
Confidence:100.0% Coverage: 94%
351 residues ( 94% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2h12C_
100.0 27
PDB header:transferase
Chain: C: PDB Molecule:citrate synthase;
PDBTitle: structure of acetobacter aceti citrate synthase complexed with2 oxaloacetate and carboxymethyldethia coenzyme a (cmx)
2d1k3pa_
100.0 29
Fold:Citrate synthase
Superfamily:Citrate synthase
Family:Citrate synthase
3c3msuA_
100.0 28
PDB header:transferase
Chain: A: PDB Molecule:citrate synthase;
PDBTitle: crystal structure of citrate synthase from francisella tularensis
4d1aj8a_
100.0 28
Fold:Citrate synthase
Superfamily:Citrate synthase
Family:Citrate synthase
5c2ibpB_
100.0 28
PDB header:transferase
Chain: B: PDB Molecule:citrate synthase;
PDBTitle: crystal structure of citrate synthase from pyrobaculum aerophilum
6c1vgpA_
100.0 26
PDB header:transferase
Chain: A: PDB Molecule:373aa long hypothetical citrate synthase;
PDBTitle: crystal structure of an isozyme of citrate synthase from sulfolbus2 tokodaii strain7
7c2r26C_
100.0 25
PDB header:transferase
Chain: C: PDB Molecule:citrate synthase;
PDBTitle: the structure of the ternary complex of carboxymethyl2 coenzyme a and oxalateacetate with citrate synthase from3 the thermophilic archaeonthermoplasma acidophilum
8d1ioma_
100.0 31
Fold:Citrate synthase
Superfamily:Citrate synthase
Family:Citrate synthase
9c6abxA_
100.0 27
PDB header:transferase
Chain: A: PDB Molecule:citrate synthase;
PDBTitle: crystal structure of citrate synthase (msed_1522) from metallosphaera2 sedula in complex with citrate
10c1vgmB_
100.0 26
PDB header:transferase
Chain: B: PDB Molecule:378aa long hypothetical citrate synthase;
PDBTitle: crystal structure of an isozyme of citrate synthase from sulfolbus2 tokodaii strain7
11c2c6xA_
100.0 32
PDB header:transferase
Chain: A: PDB Molecule:citrate synthase 1;
PDBTitle: structure of bacillus subtilis citrate synthase
12c3hwkE_
100.0 30
PDB header:transferase
Chain: E: PDB Molecule:methylcitrate synthase;
PDBTitle: crystal structure of methylcitrate synthase from mycobacterium2 tuberculosis
13d1csha_
100.0 21
Fold:Citrate synthase
Superfamily:Citrate synthase
Family:Citrate synthase
14c2p2wA_
100.0 29
PDB header:transferase
Chain: A: PDB Molecule:citrate synthase;
PDBTitle: crystal structure of citrate synthase from thermotoga maritima msb8
15d2ctsa_
100.0 22
Fold:Citrate synthase
Superfamily:Citrate synthase
Family:Citrate synthase
16d1a59a_
100.0 30
Fold:Citrate synthase
Superfamily:Citrate synthase
Family:Citrate synthase
17d1csca_
100.0 22
Fold:Citrate synthase
Superfamily:Citrate synthase
Family:Citrate synthase
18c3tqgA_
100.0 30
PDB header:transferase
Chain: A: PDB Molecule:2-methylcitrate synthase;
PDBTitle: structure of the 2-methylcitrate synthase (prpc) from coxiella2 burnetii
19d1o7xa_
100.0 28
Fold:Citrate synthase
Superfamily:Citrate synthase
Family:Citrate synthase
20c3o8jH_
100.0 31
PDB header:transferase
Chain: H: PDB Molecule:2-methylcitrate synthase;
PDBTitle: crystal structure of 2-methylcitrate synthase (prpc) from salmonella2 typhimurium
21c5uqqD_
not modelled 100.0 21
PDB header:transferase
Chain: D: PDB Molecule:2-methylcitrate synthase, mitochondrial;
PDBTitle: crystal structure of 2-methylcitrate synthase from aspergillus2 fumigatus
22c4tvmA_
not modelled 100.0 32
PDB header:transferase
Chain: A: PDB Molecule:citrate synthase;
PDBTitle: structure of citrate synthase from mycobacterium tuberculosis
23c4xghA_
not modelled 100.0 25
PDB header:transferase
Chain: A: PDB Molecule:citrate synthase;
PDBTitle: x-ray crystal structure of citrate synthase from burkholderia2 thailandensis
24c6hxpA_
not modelled 100.0 24
PDB header:lyase
Chain: A: PDB Molecule:citryl-coa lyase;
PDBTitle: structure of citryl-coa lyase from hydrogenobacter thermophilus
25c6hxjB_
not modelled 100.0 24
PDB header:lyase
Chain: B: PDB Molecule:atp-citrate lyase alpha-subunit;
PDBTitle: structure of atp citrate lyase from chlorobium limicola in complex2 with citrate and coenzyme a.
26c6hxiD_
not modelled 100.0 25
PDB header:lyase
Chain: D: PDB Molecule:succinyl-coa ligase (adp-forming) subunit alpha;
PDBTitle: structure of atp citrate lyase from methanothrix soehngenii in complex2 with citrate and coenzyme a
27c6hxlD_
not modelled 100.0 26
PDB header:lyase
Chain: D: PDB Molecule:atp-citrate synthase;
PDBTitle: structure of the citryl-coa lyase core module of human atp citrate2 lyase in complex with citrate and coash (space group p21)
28c6hxoH_
not modelled 100.0 24
PDB header:lyase
Chain: H: PDB Molecule:atp-citrate lyase alpha-subunit;
PDBTitle: structure of the citryl-coa lyase core module of chlorobium limicola2 atp citrate lyase (space group p21)
29c6qfbB_
not modelled 100.0 25
PDB header:lyase
Chain: B: PDB Molecule:atp-citrate synthase;
PDBTitle: structure of the human atp citrate lyase holoenzyme in complex with2 citrate, coenzyme a and mg.adp
30c6hxoE_
not modelled 100.0 23
PDB header:lyase
Chain: E: PDB Molecule:atp-citrate lyase alpha-subunit;
PDBTitle: structure of the citryl-coa lyase core module of chlorobium limicola2 atp citrate lyase (space group p21)
31c3j38P_
not modelled 56.1 33
PDB header:ribosome
Chain: P: PDB Molecule:40s ribosomal protein s15, isoform a;
PDBTitle: structure of the d. melanogaster 40s ribosomal proteins
32c3zeyI_
not modelled 56.1 38
PDB header:ribosome
Chain: I: PDB Molecule:40s ribosomal protein s15, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
33c3j20T_
not modelled 45.7 29
PDB header:ribosome
Chain: T: PDB Molecule:30s ribosomal protein s19p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)
34d1khda2
not modelled 39.3 34
Fold:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
35c5xyiP_
not modelled 38.3 38
PDB header:ribosome
Chain: P: PDB Molecule:ribosomal protein s19, putative;
PDBTitle: small subunit of trichomonas vaginalis ribosome
36c2xzmS_
not modelled 37.7 26
PDB header:ribosome
Chain: S: PDB Molecule:rps15e;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
37c5xxuP_
not modelled 37.6 33
PDB header:ribosome
Chain: P: PDB Molecule:ribosomal protein us19;
PDBTitle: small subunit of toxoplasma gondii ribosome
38c4jhlA_
not modelled 24.6 12
PDB header:hydrolase
Chain: A: PDB Molecule:acetyl xylan esterase;
PDBTitle: crystal structure of of axe2, an acetylxylan esterase from geobacillus2 stearothermophilus
39c3t5qA_
not modelled 21.5 23
PDB header:viral protein/rna
Chain: A: PDB Molecule:nucleoprotein;
PDBTitle: 3a structure of lassa virus nucleoprotein in complex with ssrna
40c3j20S_
not modelled 18.4 32
PDB header:ribosome
Chain: S: PDB Molecule:30s ribosomal protein s17e;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)
41c5xxuR_
not modelled 17.0 29
PDB header:ribosome
Chain: R: PDB Molecule:ribosomal protein es17;
PDBTitle: small subunit of toxoplasma gondii ribosome
42c2ly8A_
not modelled 15.4 35
PDB header:chaperone
Chain: A: PDB Molecule:budding yeast chaperone scm3;
PDBTitle: the budding yeast chaperone scm3 recognizes the partially unfolded2 dimer of the centromere-specific cse4/h4 histone variant
43c4gyxB_
not modelled 15.2 67
PDB header:structural protein, blood clotting
Chain: B: PDB Molecule:type iii collagen fragment in a host peptide stabilized by
PDBTitle: the von willebrand factor a3 domain binding region of type iii2 collagen stabilized by the cysteine knot
44c4gyxA_
not modelled 15.2 67
PDB header:structural protein, blood clotting
Chain: A: PDB Molecule:type iii collagen fragment in a host peptide stabilized by
PDBTitle: the von willebrand factor a3 domain binding region of type iii2 collagen stabilized by the cysteine knot
45c4ay8B_
not modelled 14.9 12
PDB header:transferase
Chain: B: PDB Molecule:methylcobalamin\: coenzyme m methyltransferase;
PDBTitle: semet-derivative of a methyltransferase from m. mazei
46c3o30I_
not modelled 14.5 43
PDB header:ribosome
Chain: I: PDB Molecule:40s ribosomal protein s15;
PDBTitle: yeast 80s ribosome. this entry consists of the 40s subunit of the2 second 80s in the asymmetric unit.
47c5t59D_
not modelled 14.5 13
PDB header:cell cycle
Chain: D: PDB Molecule:klla0f02343p;
PDBTitle: structure of the mind complex shows a regulatory focus of yeast2 kinetochore assembly
48c4dmtA_
not modelled 14.4 67
PDB header:structural protein
Chain: A: PDB Molecule:collagen iii derived peptide;
PDBTitle: crystal structure of a vwf binding collagen iii derived triple helical2 peptide
49c4dmtC_
not modelled 14.4 67
PDB header:structural protein
Chain: C: PDB Molecule:collagen iii derived peptide;
PDBTitle: crystal structure of a vwf binding collagen iii derived triple helical2 peptide
50c4dmtB_
not modelled 14.4 67
PDB header:structural protein
Chain: B: PDB Molecule:collagen iii derived peptide;
PDBTitle: crystal structure of a vwf binding collagen iii derived triple helical2 peptide
51c4gtnA_
not modelled 14.3 23
PDB header:transferase
Chain: A: PDB Molecule:anthranilate phosphoribosyltransferase;
PDBTitle: structure of anthranilate phosphoribosyl transferase from2 acinetobacter baylyi
52d2huec1
not modelled 14.1 25
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
53c2v53D_
not modelled 14.1 67
PDB header:cell adhesion
Chain: D: PDB Molecule:collagen alpha-1(iii) chain;
PDBTitle: crystal structure of a sparc-collagen complex
54c2v53C_
not modelled 14.1 67
PDB header:cell adhesion
Chain: C: PDB Molecule:collagen alpha-1(iii) chain;
PDBTitle: crystal structure of a sparc-collagen complex
55c2v53B_
not modelled 14.1 67
PDB header:cell adhesion
Chain: B: PDB Molecule:collagen alpha-1(iii) chain;
PDBTitle: crystal structure of a sparc-collagen complex
56d2elca2
not modelled 13.7 31
Fold:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
57c1j9zB_
not modelled 13.5 20
PDB header:oxidoreductase
Chain: B: PDB Molecule:nadph-cytochrome p450 reductase;
PDBTitle: cypor-w677g
58c3mx2A_
not modelled 12.9 23
PDB header:nuclear protein
Chain: A: PDB Molecule:nucleoprotein;
PDBTitle: lassa fever virus nucleoprotein complexed with dttp
59c3c3iA_
not modelled 12.6 15
PDB header:hydrolase
Chain: A: PDB Molecule:deoxyuridine triphosphatase;
PDBTitle: evolution of chlorella virus dutpase
60c3j3aR_
not modelled 12.6 24
PDB header:ribosome
Chain: R: PDB Molecule:40s ribosomal protein s17;
PDBTitle: structure of the human 40s ribosomal proteins
61c4gyxC_
not modelled 12.3 67
PDB header:structural protein, blood clotting
Chain: C: PDB Molecule:type iii collagen fragment in a host peptide stabilized by
PDBTitle: the von willebrand factor a3 domain binding region of type iii2 collagen stabilized by the cysteine knot
62d1zy3a1
not modelled 11.9 16
Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
63c5b02C_
not modelled 11.3 17
PDB header:transferase, dna binding protein
Chain: C: PDB Molecule:moen5,dna-binding protein 7d;
PDBTitle: structure of the prenyltransferase moen5 with a fusion protein tag of2 sso7d
64c1fctA_
not modelled 10.8 86
PDB header:transit peptide
Chain: A: PDB Molecule:ferredoxin chloroplastic transit peptide
PDBTitle: nmr structures of ferredoxin chloroplastic transit peptide2 from chlamydomonas reinhardtii promoted by3 trifluoroethanol in aqueous solution
65c5nd1A_
not modelled 10.6 24
PDB header:virus
Chain: A: PDB Molecule:capsid protein;
PDBTitle: viral evolution results in multiple, surface-allocated enzymatic2 activities in a fungal double-stranded rna virus
66d1r3sa_
not modelled 10.6 20
Fold:TIM beta/alpha-barrel
Superfamily:UROD/MetE-like
Family:Uroporphyrinogen decarboxylase, UROD
67d1kx5b_
not modelled 10.5 26
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
68d1brwa2
not modelled 10.5 19
Fold:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
69c5foeA_
not modelled 10.4 38
PDB header:transferase
Chain: A: PDB Molecule:gdp-fucose protein o-fucosyltransferase 2,thrombospondin-1;
PDBTitle: crystal structure of the c. elegans protein o-fucosyltransferase 22 (cepofut2) double mutant (r298k-r299k) in complex with gdp and the3 human tsr1 from thrombospondin 1
70c1tllA_
not modelled 10.4 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitric-oxide synthase, brain;
PDBTitle: crystal structure of rat neuronal nitric-oxide synthase2 reductase module at 2.3 a resolution.
71c5b0mB_
not modelled 10.1 17
PDB header:transferase, dna binding protein
Chain: B: PDB Molecule:moen5,dna-binding protein 7d;
PDBTitle: structure of moen5-sso7d fusion protein in complex with beta-dodecyl2 maltoside
72c5jd3A_
not modelled 9.7 18
PDB header:hydrolase
Chain: A: PDB Molecule:lae5;
PDBTitle: crystal structure of lae5, an alpha/beta hydrolase enzyme from the2 metagenome of lake arreo, spain
73d1b8za_
not modelled 9.6 29
Fold:IHF-like DNA-binding proteins
Superfamily:IHF-like DNA-binding proteins
Family:Prokaryotic DNA-bending protein
74c2l0cA_
not modelled 9.5 50
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative membrane protein;
PDBTitle: solution nmr structure of protein sty4237 (residues 36-120) from2 salmonella enterica, northeast structural genomics consortium target3 slr115
75d1id3b_
not modelled 9.5 23
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
76c2bpqB_
not modelled 9.5 24
PDB header:transferase
Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase;
PDBTitle: anthranilate phosphoribosyltransferase (trpd) from2 mycobacterium tuberculosis (apo structure)
77c3fcgB_
not modelled 9.0 14
PDB header:membrane protein, protein transport
Chain: B: PDB Molecule:f1 capsule-anchoring protein;
PDBTitle: crystal structure analysis of the middle domain of the2 caf1a usher
78c6nmiE_
not modelled 8.9 14
PDB header:transcription
Chain: E: PDB Molecule:general transcription factor iih subunit 2, p44;
PDBTitle: cryo-em structure of the human tfiih core complex
79c2d4nA_
not modelled 8.5 18
PDB header:hydrolase
Chain: A: PDB Molecule:du;
PDBTitle: crystal structure of m-pmv dutpase complexed with dupnpp, substrate2 analogue
80d1vyqa1
not modelled 8.3 17
Fold:beta-clip
Superfamily:dUTPase-like
Family:dUTPase-like
81d1uoua2
not modelled 8.2 16
Fold:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
82d2incb1
not modelled 8.2 14
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
83d1mula_
not modelled 8.1 19
Fold:IHF-like DNA-binding proteins
Superfamily:IHF-like DNA-binding proteins
Family:Prokaryotic DNA-bending protein
84c6hc2L_
not modelled 7.8 38
PDB header:cell cycle
Chain: L: PDB Molecule:nuclear mitotic apparatus protein 1;
PDBTitle: crystal structure of numa/lgn hetero-hexamers
85c3cxnB_
not modelled 7.7 12
PDB header:chaperone
Chain: B: PDB Molecule:urease accessory protein uref;
PDBTitle: structure of the urease accessory protein uref from helicobacter2 pylori
86c3ajvD_
not modelled 7.7 14
PDB header:hydrolase
Chain: D: PDB Molecule:trna-splicing endonuclease;
PDBTitle: splicing endonuclease from aeropyrum pernix
87c3h1nA_
not modelled 7.7 15
PDB header:transferase
Chain: A: PDB Molecule:probable glutathione s-transferase;
PDBTitle: crystal structure of probable glutathione s-transferase from2 bordetella bronchiseptica rb50
88c5t58A_
not modelled 7.5 13
PDB header:cell cycle
Chain: A: PDB Molecule:klla0f02343p;
PDBTitle: structure of the mind complex shows a regulatory focus of yeast2 kinetochore assembly
89c5wwlM_
not modelled 7.4 21
PDB header:cell cycle
Chain: M: PDB Molecule:centromere protein mis12;
PDBTitle: crystal structure of the schizogenesis pombe kinetochore mis12c2 subcomplex
90c2l5aA_
not modelled 7.4 35
PDB header:nuclear protein
Chain: A: PDB Molecule:histone h3-like centromeric protein cse4, protein scm3,
PDBTitle: structural basis for recognition of centromere specific histone h32 variant by nonhistone scm3
91c4e2i3_
not modelled 7.3 19
PDB header:hydrolase/dna binding protein
Chain: 3: PDB Molecule:dna polymerase alpha subunit b;
PDBTitle: the complex structure of the sv40 helicase large t antigen and p682 subunit of dna polymerase alpha-primase
92c2kebA_
not modelled 7.3 19
PDB header:dna binding protein
Chain: A: PDB Molecule:dna polymerase subunit alpha b;
PDBTitle: nmr solution structure of the n-terminal domain of the dna polymerase2 alpha p68 subunit
93c5xyiR_
not modelled 7.3 24
PDB header:ribosome
Chain: R: PDB Molecule:40s ribosomal protein s17-b, putative;
PDBTitle: small subunit of trichomonas vaginalis ribosome
94d1ja1a2
not modelled 7.3 20
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Cytochrome p450 reductase N-terminal domain-like
95c2a5yA_
not modelled 7.2 11
PDB header:apoptosis
Chain: A: PDB Molecule:apoptosis regulator ced-9;
PDBTitle: structure of a ced-4/ced-9 complex
96c2p9oB_
not modelled 7.2 17
PDB header:hydrolase
Chain: B: PDB Molecule:dutp pyrophosphatase-like protein;
PDBTitle: structure of dutpase from arabidopsis thaliana
97d1hiod_
not modelled 7.0 40
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
98c2xzmV_
not modelled 7.0 24
PDB header:ribosome
Chain: V: PDB Molecule:rps17e;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
99c2yzjB_
not modelled 7.0 16
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:167aa long hypothetical dutpase;
PDBTitle: crystal structure of dctp deaminase from sulfolobus tokodaii

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