Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0890c_(-)_989951_992599
DateFri Jul 26 01:50:48 BST 2019
Unique Job ID075abb721d251202
SequenceVRALLAQNRL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:70.168 Y:80.891 Z:89.299
Model (left) based on template c6mfvC_
Top template information
PDB header:signaling protein
Chain: C: PDB Molecule:tetratricopeptide repeat sensor ph0952;
PDBTitle: crystal structure of the signal transduction atpase with numerous2 domains (stand) protein with a tetratricopeptide repeat sensor ph09523 from pyrococcus horikoshii
Confidence and coverage
Confidence:100.0% Coverage: 68%
604 residues ( 68% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
729 residues ( 83%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6mfvC_
100.0 11
PDB header:signaling protein
Chain: C: PDB Molecule:tetratricopeptide repeat sensor ph0952;
PDBTitle: crystal structure of the signal transduction atpase with numerous2 domains (stand) protein with a tetratricopeptide repeat sensor ph09523 from pyrococcus horikoshii
2c4lfuA_
99.8 23
PDB header:dna binding protein
Chain: A: PDB Molecule:regulatory protein sdia;
PDBTitle: crystal structure of escherichia coli sdia in the space group c2
3c2q0oA_
99.8 32
PDB header:transcription
Chain: A: PDB Molecule:probable transcriptional activator protein trar;
PDBTitle: crystal structure of an anti-activation complex in bacterial quorum2 sensing
4c3sztB_
99.8 21
PDB header:transcription
Chain: B: PDB Molecule:quorum-sensing control repressor;
PDBTitle: quorum sensing control repressor, qscr, bound to n-3-oxo-dodecanoyl-l-2 homoserine lactone
5c1h0mD_
99.8 23
PDB header:transcription/dna
Chain: D: PDB Molecule:transcriptional activator protein trar;
PDBTitle: three-dimensional structure of the quorum sensing protein trar bound2 to its autoinducer and to its target dna
6c3qp5C_
99.8 30
PDB header:transcription
Chain: C: PDB Molecule:cvir transcriptional regulator;
PDBTitle: crystal structure of cvir bound to antagonist chlorolactone (cl)
7c2a5yB_
99.8 15
PDB header:apoptosis
Chain: B: PDB Molecule:ced-4;
PDBTitle: structure of a ced-4/ced-9 complex
8c3iytG_
99.7 14
PDB header:apoptosis
Chain: G: PDB Molecule:apoptotic protease-activating factor 1;
PDBTitle: structure of an apoptosome-procaspase-9 card complex
9c1z6tC_
99.7 19
PDB header:apoptosis
Chain: C: PDB Molecule:apoptotic protease activating factor 1;
PDBTitle: structure of the apoptotic protease-activating factor 12 bound to adp
10c5juyB_
99.7 19
PDB header:apoptosis
Chain: B: PDB Molecule:apoptotic protease-activating factor 1;
PDBTitle: active human apoptosome with procaspase-9
11c3c3wB_
99.7 38
PDB header:transcription
Chain: B: PDB Molecule:two component transcriptional regulatory protein devr;
PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic response2 regulator dosr
12c4if4A_
99.7 30
PDB header:transcription
Chain: A: PDB Molecule:response regulator protein vrar;
PDBTitle: crystal structure of the magnesium and beryllofluoride-activated vrar2 from staphylococcus aureus
13c5f64C_
99.7 34
PDB header:transcription regulator
Chain: C: PDB Molecule:positive transcription regulator evga;
PDBTitle: putative positive transcription regulator (sensor evgs) from shigella2 flexneri
14c4yn8A_
99.7 34
PDB header:dna binding protein
Chain: A: PDB Molecule:response regulator chra;
PDBTitle: crystal structure of response regulator chra in heme-sensing two2 component system
15c1zljE_
99.7 38
PDB header:transcription
Chain: E: PDB Molecule:dormancy survival regulator;
PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic2 response regulator dosr c-terminal domain
16c5hevC_
99.7 36
PDB header:transcription
Chain: C: PDB Molecule:response regulator protein vrar;
PDBTitle: crystal structure of the beryllofluoride-activated liar from2 enterococcus faecium
17c4hyeB_
99.7 29
PDB header:transcription activator
Chain: B: PDB Molecule:response regulator;
PDBTitle: crystal structure of a response regulator spr1814 from streptococcus2 pneumoniae reveals unique interdomain contacts among narl family3 proteins
18c5o8yG_
99.7 28
PDB header:transcription
Chain: G: PDB Molecule:transcriptional regulatory protein rcsb;
PDBTitle: conformational dynamism for dna interaction in salmonella typhimurium2 rcsb response regulator.
19c3klnC_
99.7 35
PDB header:transcription
Chain: C: PDB Molecule:transcriptional regulator, luxr family;
PDBTitle: vibrio cholerae vpst
20d1p4wa_
99.7 28
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
21c6jqsA_
not modelled 99.7 36
PDB header:dna binding protein
Chain: A: PDB Molecule:dna-binding response regulator;
PDBTitle: structure of transcription factor, gere
22c2krfB_
not modelled 99.7 32
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulatory protein coma;
PDBTitle: nmr solution structure of the dna binding domain of competence protein2 a
23c3cloC_
not modelled 99.7 29
PDB header:transcription regulator
Chain: C: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of putative transcriptional regulator containing a2 luxr dna binding domain (np_811094.1) from bacteroides3 thetaiotaomicron vpi-5482 at 2.04 a resolution
24c1zn2A_
not modelled 99.6 36
PDB header:transcription regulator
Chain: A: PDB Molecule:response regulatory protein;
PDBTitle: low resolution structure of response regulator styr
25c1rnlA_
not modelled 99.6 40
PDB header:signal transduction protein
Chain: A: PDB Molecule:nitrate/nitrite response regulator protein narl;
PDBTitle: the nitrate/nitrite response regulator protein narl from narl
26d1a04a1
not modelled 99.6 38
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
27d1l3la1
not modelled 99.6 24
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
28d1fsea_
not modelled 99.6 39
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
29c6ideA_
not modelled 99.6 31
PDB header:transcription/dna
Chain: A: PDB Molecule:transcriptional regulator luxr family;
PDBTitle: crystal structure of the vibrio cholera vqma-ligand-dna complex2 provides molecular mechanisms for drug design
30c2rnjA_
not modelled 99.6 31
PDB header:transcription
Chain: A: PDB Molecule:response regulator protein vrar;
PDBTitle: nmr structure of the s. aureus vrar dna binding domain
31c1x3uA_
not modelled 99.6 44
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein fixj;
PDBTitle: solution structure of the c-terminal transcriptional2 activator domain of fixj from sinorhizobium melilot
32d1yioa1
not modelled 99.6 36
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
33c3iz8D_
not modelled 99.6 16
PDB header:apoptosis
Chain: D: PDB Molecule:apaf-1 related killer dark;
PDBTitle: structure of the drosophila apoptosome
34c1vt4I_
not modelled 99.6 16
PDB header:apoptosis
Chain: I: PDB Molecule:apaf-1 related killer dark;
PDBTitle: structure of the drosophila apoptosome
35c1vt4K_
not modelled 99.6 16
PDB header:apoptosis
Chain: K: PDB Molecule:apaf-1 related killer dark;
PDBTitle: structure of the drosophila apoptosome
36c3iz8B_
not modelled 99.6 16
PDB header:apoptosis
Chain: B: PDB Molecule:apaf-1 related killer dark;
PDBTitle: structure of the drosophila apoptosome
37c1vt4P_
not modelled 99.6 16
PDB header:apoptosis
Chain: P: PDB Molecule:apaf-1 related killer dark;
PDBTitle: structure of the drosophila apoptosome
38c1vt4N_
not modelled 99.6 16
PDB header:apoptosis
Chain: N: PDB Molecule:apaf-1 related killer dark;
PDBTitle: structure of the drosophila apoptosome
39c1vt4M_
not modelled 99.6 16
PDB header:apoptosis
Chain: M: PDB Molecule:apaf-1 related killer dark;
PDBTitle: structure of the drosophila apoptosome
40c3iz8F_
not modelled 99.6 16
PDB header:apoptosis
Chain: F: PDB Molecule:apaf-1 related killer dark;
PDBTitle: structure of the drosophila apoptosome
41c3iz8H_
not modelled 99.6 16
PDB header:apoptosis
Chain: H: PDB Molecule:apaf-1 related killer dark;
PDBTitle: structure of the drosophila apoptosome
42c1vt4J_
not modelled 99.6 16
PDB header:apoptosis
Chain: J: PDB Molecule:apaf-1 related killer dark;
PDBTitle: structure of the drosophila apoptosome
43c1vt4L_
not modelled 99.6 16
PDB header:apoptosis
Chain: L: PDB Molecule:apaf-1 related killer dark;
PDBTitle: structure of the drosophila apoptosome
44c3iz8G_
not modelled 99.6 16
PDB header:apoptosis
Chain: G: PDB Molecule:apaf-1 related killer dark;
PDBTitle: structure of the drosophila apoptosome
45c3iz8A_
not modelled 99.6 16
PDB header:apoptosis
Chain: A: PDB Molecule:apaf-1 related killer dark;
PDBTitle: structure of the drosophila apoptosome
46c1vt4O_
not modelled 99.6 16
PDB header:apoptosis
Chain: O: PDB Molecule:apaf-1 related killer dark;
PDBTitle: structure of the drosophila apoptosome
47c3iz8C_
not modelled 99.6 16
PDB header:apoptosis
Chain: C: PDB Molecule:apaf-1 related killer dark;
PDBTitle: structure of the drosophila apoptosome
48c3iz8E_
not modelled 99.6 16
PDB header:apoptosis
Chain: E: PDB Molecule:apaf-1 related killer dark;
PDBTitle: structure of the drosophila apoptosome
49c2jpcA_
not modelled 99.5 34
PDB header:dna binding protein
Chain: A: PDB Molecule:ssrb;
PDBTitle: ssrb dna binding protein
50c5xt2C_
not modelled 99.5 41
PDB header:dna binding protein
Chain: C: PDB Molecule:response regulator fixj;
PDBTitle: crystal structures of full-length fixj from b. japonicum crystallized2 in space group p212121
51c6j5tC_
not modelled 99.4 16
PDB header:plant protein
Chain: C: PDB Molecule:disease resistance rpp13-like protein 4;
PDBTitle: reconstitution and structure of a plant nlr resistosome conferring2 immunity
52c2fnaA_
not modelled 99.4 12
PDB header:atp-binding protein
Chain: A: PDB Molecule:conserved hypothetical protein;
PDBTitle: crystal structure of an archaeal aaa+ atpase (sso1545) from sulfolobus2 solfataricus p2 at 2.00 a resolution
53c2qenA_
not modelled 99.3 15
PDB header:unknown function
Chain: A: PDB Molecule:walker-type atpase;
PDBTitle: the walker-type atpase paby2304 of pyrococcus abyssi
54c5udbA_
not modelled 99.2 10
PDB header:replication
Chain: A: PDB Molecule:origin recognition complex subunit 1;
PDBTitle: structural basis of mcm2-7 replicative helicase loading by orc-cdc62 and cdt1
55c4kxfF_
not modelled 99.1 19
PDB header:immune system
Chain: F: PDB Molecule:nlr family card domain-containing protein 4;
PDBTitle: crystal structure of nlrc4 reveals its autoinhibition mechanism
56c4kxfP_
not modelled 99.1 19
PDB header:immune system
Chain: P: PDB Molecule:nlr family card domain-containing protein 4;
PDBTitle: crystal structure of nlrc4 reveals its autoinhibition mechanism
57c2v1uA_
not modelled 99.1 12
PDB header:replication
Chain: A: PDB Molecule:cell division control protein 6 homolog;
PDBTitle: structure of the aeropyrum pernix orc1 protein in complex2 with dna
58c2qbyB_
not modelled 99.0 12
PDB header:replication/dna
Chain: B: PDB Molecule:cell division control protein 6 homolog 3;
PDBTitle: crystal structure of a heterodimer of cdc6/orc1 initiators2 bound to origin dna (from s. solfataricus)
59d2fnaa2
not modelled 99.0 14
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
60c4xgcE_
not modelled 99.0 17
PDB header:dna binding protein
Chain: E: PDB Molecule:origin recognition complex subunit 5;
PDBTitle: crystal structure of the eukaryotic origin recognition complex
61c1fnnB_
not modelled 99.0 15
PDB header:cell cycle
Chain: B: PDB Molecule:cell division control protein 6;
PDBTitle: crystal structure of cdc6p from pyrobaculum aerophilum
62c2qbyA_
not modelled 99.0 10
PDB header:replication/dna
Chain: A: PDB Molecule:cell division control protein 6 homolog 1;
PDBTitle: crystal structure of a heterodimer of cdc6/orc1 initiators2 bound to origin dna (from s. solfataricus)
63c4xgcA_
not modelled 98.8 12
PDB header:dna binding protein
Chain: A: PDB Molecule:origin recognition complex subunit 1;
PDBTitle: crystal structure of the eukaryotic origin recognition complex
64c5ujmE_
not modelled 98.8 15
PDB header:replication
Chain: E: PDB Molecule:origin recognition complex subunit 5;
PDBTitle: structure of the active form of human origin recognition complex and2 its atpase motor module
65c5uj7C_
not modelled 98.8 13
PDB header:dna binding protein
Chain: C: PDB Molecule:origin recognition complex subunit 4;
PDBTitle: structure of the active form of human origin recognition complex2 atpase motor module, complex subunits 1, 4, 5
66c6b5bA_
not modelled 98.8 22
PDB header:immune system
Chain: A: PDB Molecule:baculoviral iap repeat-containing protein 1e;
PDBTitle: cryo-em structure of the naip5-nlrc4-flagellin inflammasome
67c5uj7B_
not modelled 98.7 8
PDB header:dna binding protein
Chain: B: PDB Molecule:origin recognition complex subunit 1;
PDBTitle: structure of the active form of human origin recognition complex2 atpase motor module, complex subunits 1, 4, 5
68c5zr1A_
not modelled 98.6 13
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:origin recognition complex subunit 1;
PDBTitle: saccharomyces cerevisiae origin recognition complex bound to a 72-bp2 origin dna containing acs and b1 element
69c3pfiB_
not modelled 98.6 18
PDB header:hydrolase
Chain: B: PDB Molecule:holliday junction atp-dependent dna helicase ruvb;
PDBTitle: 2.7 angstrom resolution crystal structure of a probable holliday2 junction dna helicase (ruvb) from campylobacter jejuni subsp. jejuni3 nctc 11168 in complex with adenosine-5'-diphosphate
70c6npyA_
not modelled 98.5 20
PDB header:immune system
Chain: A: PDB Molecule:nacht, lrr and pyd domains-containing protein 3;
PDBTitle: cryo-em structure of nlrp3 bound to nek7
71c1kgsA_
not modelled 98.5 13
PDB header:dna binding protein
Chain: A: PDB Molecule:dna binding response regulator d;
PDBTitle: crystal structure at 1.50 a of an ompr/phob homolog from thermotoga2 maritima
72d1fnna2
not modelled 98.5 15
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
73c5udb9_
not modelled 98.5 10
PDB header:replication
Chain: 9: PDB Molecule:cell division control protein 6;
PDBTitle: structural basis of mcm2-7 replicative helicase loading by orc-cdc62 and cdt1
74c5udbE_
not modelled 98.5 19
PDB header:replication
Chain: E: PDB Molecule:origin recognition complex subunit 5;
PDBTitle: structural basis of mcm2-7 replicative helicase loading by orc-cdc62 and cdt1
75c4xgcD_
not modelled 98.5 11
PDB header:dna binding protein
Chain: D: PDB Molecule:origin recognition complex subunit 4;
PDBTitle: crystal structure of the eukaryotic origin recognition complex
76c5yudA_
not modelled 98.3 18
PDB header:immune system
Chain: A: PDB Molecule:baculoviral iap repeat-containing protein 1e;
PDBTitle: flagellin derivative in complex with the nlr protein naip5
77d1ttya_
not modelled 98.3 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
78c3q9sA_
not modelled 98.3 28
PDB header:dna binding protein
Chain: A: PDB Molecule:dna-binding response regulator;
PDBTitle: crystal structure of rra(1-215) from deinococcus radiodurans
79c6blbA_
not modelled 98.3 18
PDB header:hydrolase
Chain: A: PDB Molecule:holliday junction atp-dependent dna helicase ruvb;
PDBTitle: 1.88 angstrom resolution crystal structure holliday junction atp-2 dependent dna helicase (ruvb) from pseudomonas aeruginosa in complex3 with adp
80c2zamA_
not modelled 98.3 16
PDB header:protein transport
Chain: A: PDB Molecule:vacuolar protein sorting-associating protein 4b;
PDBTitle: crystal structure of mouse skd1/vps4b apo-form
81c3b9pA_
not modelled 98.2 14
PDB header:hydrolase
Chain: A: PDB Molecule:cg5977-pa, isoform a;
PDBTitle: spastin
82c1xwiA_
not modelled 98.2 15
PDB header:protein transport
Chain: A: PDB Molecule:skd1 protein;
PDBTitle: crystal structure of vps4b
83c1xxhB_
not modelled 98.2 22
PDB header:transferase
Chain: B: PDB Molecule:dna polymerase iii subunit gamma;
PDBTitle: atpgs bound e. coli clamp loader complex
84c2chvE_
not modelled 98.2 10
PDB header:dna-binding protein
Chain: E: PDB Molecule:replication factor c small subunit;
PDBTitle: replication factor c adpnp complex
85c1sxjC_
not modelled 98.2 12
PDB header:replication
Chain: C: PDB Molecule:activator 1 40 kda subunit;
PDBTitle: crystal structure of the eukaryotic clamp loader (replication factor2 c, rfc) bound to the dna sliding clamp (proliferating cell nuclear3 antigen, pcna)
86c6s2pN_
not modelled 98.2 22
PDB header:plant protein
Chain: N: PDB Molecule:nrc1;
PDBTitle: structure of the nb-arc domain from the tomato immune receptor nrc1
87d2p7vb1
not modelled 98.2 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
88c1ny5A_
not modelled 98.2 15
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state
89c1w5sB_
not modelled 98.2 24
PDB header:replication
Chain: B: PDB Molecule:origin recognition complex subunit 2 orc2;
PDBTitle: structure of the aeropyrum pernix orc2 protein (adp form)
90c1sxjA_
not modelled 98.2 13
PDB header:replication
Chain: A: PDB Molecule:activator 1 95 kda subunit;
PDBTitle: crystal structure of the eukaryotic clamp loader (replication factor2 c, rfc) bound to the dna sliding clamp (proliferating cell nuclear3 antigen, pcna)
91c1in8A_
not modelled 98.2 21
PDB header:dna binding protein
Chain: A: PDB Molecule:holliday junction dna helicase ruvb;
PDBTitle: thermotoga maritima ruvb t158v
92c3d8bB_
not modelled 98.1 16
PDB header:hydrolase
Chain: B: PDB Molecule:fidgetin-like protein 1;
PDBTitle: crystal structure of human fidgetin-like protein 1 in complex with adp
93c1iqpF_
not modelled 98.1 10
PDB header:replication
Chain: F: PDB Molecule:rfcs;
PDBTitle: crystal structure of the clamp loader small subunit from2 pyrococcus furiosus
94c3te6A_
not modelled 98.1 15
PDB header:gene regulation
Chain: A: PDB Molecule:regulatory protein sir3;
PDBTitle: crystal structure of the s. cerevisiae sir3 aaa+ domain
95c2chgB_
not modelled 98.1 11
PDB header:dna-binding protein
Chain: B: PDB Molecule:replication factor c small subunit;
PDBTitle: replication factor c domains 1 and 2
96d1smyf2
not modelled 98.1 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
97d1hz4a_
not modelled 98.1 15
Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:Transcription factor MalT domain III
98c1sxjD_
not modelled 98.1 10
PDB header:replication
Chain: D: PDB Molecule:activator 1 41 kda subunit;
PDBTitle: crystal structure of the eukaryotic clamp loader (replication factor2 c, rfc) bound to the dna sliding clamp (proliferating cell nuclear3 antigen, pcna)
99c6opcF_
not modelled 98.1 11
PDB header:motor protein
Chain: F: PDB Molecule:cell division control protein 48;
PDBTitle: cdc48 hexamer in a complex with substrate and shp1(ubx domain)
100d1sxjd2
not modelled 98.1 10
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
101c6nyyC_
not modelled 98.1 15
PDB header:translocase
Chain: C: PDB Molecule:afg3-like protein 2;
PDBTitle: human m-aaa protease afg3l2, substrate-bound
102c3vfdA_
not modelled 98.0 19
PDB header:hydrolase
Chain: A: PDB Molecule:spastin;
PDBTitle: human spastin aaa domain
103d1rp3a2
not modelled 98.0 29
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
104d1sxja2
not modelled 98.0 13
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
105d1sxjc2
not modelled 98.0 10
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
106c3vepA_
not modelled 98.0 23
PDB header:membrane protein/transcription
Chain: A: PDB Molecule:probable rna polymerase sigma-d factor;
PDBTitle: crystal structure of sigd4 in complex with its negative regulator rsda
107c4z8xC_
not modelled 98.0 18
PDB header:hydrolase
Chain: C: PDB Molecule:atp-dependent zinc metalloprotease ftsh;
PDBTitle: truncated ftsh from a. aeolicus
108c3hugA_
not modelled 98.0 28
PDB header:transcription/membrane protein
Chain: A: PDB Molecule:rna polymerase sigma factor;
PDBTitle: crystal structure of mycobacterium tuberculosis anti-sigma factor rsla2 in complex with -35 promoter binding domain of sigl
109d1or7a1
not modelled 98.0 23
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
110c2kjqA_
not modelled 98.0 16
PDB header:replication
Chain: A: PDB Molecule:dnaa-related protein;
PDBTitle: solution structure of protein nmb1076 from neisseria meningitidis.2 northeast structural genomics consortium target mr101b.
111c1sxjB_
not modelled 98.0 9
PDB header:replication
Chain: B: PDB Molecule:activator 1 37 kda subunit;
PDBTitle: crystal structure of the eukaryotic clamp loader (replication factor2 c, rfc) bound to the dna sliding clamp (proliferating cell nuclear3 antigen, pcna)
112d1njfa_
not modelled 98.0 13
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
113c2o8xA_
not modelled 98.0 24
PDB header:transcription
Chain: A: PDB Molecule:probable rna polymerase sigma-c factor;
PDBTitle: crystal structure of the "-35 element" promoter recognition domain of2 mycobacterium tuberculosis sigc
114c4l16A_
not modelled 98.0 14
PDB header:hydrolase
Chain: A: PDB Molecule:fidgetin-like protein 1;
PDBTitle: crystal structure of figl-1 aaa domain in complex with adp
115d1ku7a_
not modelled 97.9 14
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
116d1in4a2
not modelled 97.9 21
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
117c6c03A_
not modelled 97.9 22
PDB header:transcription
Chain: A: PDB Molecule:putative rna polymerase ecf-subfamily sigma factor;
PDBTitle: the crystal structure streptomyces venezuelae rsbn-bldn complex
118d1xsva_
not modelled 97.9 26
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:YlxM/p13-like
119c4lcbA_
not modelled 97.9 14
PDB header:protein transport
Chain: A: PDB Molecule:cell division protein cdvc, vps4;
PDBTitle: structure of vps4 homolog from acidianus hospitalis
120c1xp8A_
not modelled 97.9 20
PDB header:dna binding protein
Chain: A: PDB Molecule:reca protein;
PDBTitle: deinococcus radiodurans reca in complex with atp-gamma-s

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite