Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0891c_(-)_992601_993458
DateFri Jul 26 01:50:48 BST 2019
Unique Job ID65cf1c649a4e5dba
SequenceVLFNAVHNSL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:75.292 Y:47.754 Z:74.331
Model (left) based on template c6fhtB_
Top template information
PDB header:lyase
Chain: B: PDB Molecule:bacteriophytochrome,adenylate cyclase;
PDBTitle: crystal structure of an artificial phytochrome regulated2 adenylate/guanylate cyclase in its dark adapted pr form
Confidence and coverage
Confidence:100.0% Coverage: 78%
223 residues ( 78% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6fhtB_



100.0 20
PDB header:lyase
Chain: B: PDB Molecule:bacteriophytochrome,adenylate cyclase;
PDBTitle: crystal structure of an artificial phytochrome regulated2 adenylate/guanylate cyclase in its dark adapted pr form
2d1fx2a_



100.0 34
Fold:Ferredoxin-like
Superfamily:Nucleotide cyclase
Family:Adenylyl and guanylyl cyclase catalytic domain
3d1fx4a_



100.0 37
Fold:Ferredoxin-like
Superfamily:Nucleotide cyclase
Family:Adenylyl and guanylyl cyclase catalytic domain
4c1y10C_



100.0 18
PDB header:lyase
Chain: C: PDB Molecule:hypothetical protein rv1264/mt1302;
PDBTitle: mycobacterial adenylyl cyclase rv1264, holoenzyme, inhibited state
5c4yusA_



100.0 22
PDB header:lyase
Chain: A: PDB Molecule:family 3 adenylate cyclase;
PDBTitle: crystal structure of photoactivated adenylyl cyclase of a2 cyanobacteriaoscillatoria acuminata in hexagonal form
6c5nbyA_



100.0 20
PDB header:lyase
Chain: A: PDB Molecule:beta subunit of photoactivated adenylyl cyclase;
PDBTitle: structure of a bacterial light-regulated adenylyl cylcase
7c4wp3E_



100.0 29
PDB header:lyase
Chain: E: PDB Molecule:ma1120;
PDBTitle: crystal structure of adenylyl cyclase from mycobacterium avium ma11202 wild type
8c3mr7B_



100.0 27
PDB header:hydrolase
Chain: B: PDB Molecule:adenylate/guanylate cyclase/hydrolase, alpha/beta fold
PDBTitle: crystal structure of adenylate/guanylate cyclase/hydrolase from2 silicibacter pomeroyi
9c6r4oA_



100.0 19
PDB header:membrane protein
Chain: A: PDB Molecule:adenylate cyclase 9;
PDBTitle: structure of a truncated adenylyl cyclase bound to mant-gtp, forskolin2 and an activated stimulatory galphas protein
10c4cllA_



100.0 20
PDB header:lyase
Chain: A: PDB Molecule:adenylate cyclase type 10;
PDBTitle: crystal structure of human soluble adenylyl cyclase in complex with2 bicarbonate
11c5o5kC_



100.0 20
PDB header:membrane protein
Chain: C: PDB Molecule:adenylate cyclase;
PDBTitle: x-ray structure of a bacterial adenylyl cyclase soluble domain
12c1ybuA_



100.0 30
PDB header:hydrolase
Chain: A: PDB Molecule:lipj;
PDBTitle: mycobacterium tuberculosis adenylyl cyclase rv1900c chd, in complex2 with a substrate analog.
13c1wc6B_



100.0 23
PDB header:lyase
Chain: B: PDB Molecule:adenylate cyclase;
PDBTitle: soluble adenylyl cyclase cyac from s. platensis in complex2 with rp-atpalphas in presence of bicarbonate
14d1wc1a_



100.0 23
Fold:Ferredoxin-like
Superfamily:Nucleotide cyclase
Family:Adenylyl and guanylyl cyclase catalytic domain
15c3r5gB_



100.0 22
PDB header:lyase
Chain: B: PDB Molecule:cyab;
PDBTitle: crystal structure of the adenylyl cyclase cyab from p. aeruginosa
16c6r4pA_



100.0 19
PDB header:membrane protein
Chain: A: PDB Molecule:adenylate cyclase 9;
PDBTitle: structure of a soluble domain of adenylyl cyclase bound to an2 activated stimulatory g protein
17c3uvjC_



100.0 22
PDB header:lyase
Chain: C: PDB Molecule:guanylate cyclase soluble subunit alpha-3;
PDBTitle: crystal structure of the catalytic domain of the heterodimeric human2 soluble guanylate cyclase 1.
18c1cjkA_



100.0 15
PDB header:lyase/lyase/signaling protein
Chain: A: PDB Molecule:adenylate cyclase, type v;
PDBTitle: complex of gs-alpha with the catalytic domains of mammalian adenylyl2 cyclase: complex with adenosine 5'-(alpha thio)-triphosphate (rp),3 mg, and mn
19c3et6A_



100.0 20
PDB header:lyase
Chain: A: PDB Molecule:soluble guanylyl cyclase beta;
PDBTitle: the crystal structure of the catalytic domain of a eukaryotic2 guanylate cyclase
20c2w01C_



100.0 25
PDB header:lyase
Chain: C: PDB Molecule:adenylate cyclase;
PDBTitle: crystal structure of the guanylyl cyclase cya2
21d1azsa_



not modelled 100.0 16
Fold:Ferredoxin-like
Superfamily:Nucleotide cyclase
Family:Adenylyl and guanylyl cyclase catalytic domain
22c2wz1B_



not modelled 100.0 22
PDB header:lyase
Chain: B: PDB Molecule:guanylate cyclase soluble subunit beta-1;
PDBTitle: structure of the catalytic domain of human soluble guanylate cyclase 12 beta 3.
23c1yk9A_



not modelled 100.0 24
PDB header:lyase
Chain: A: PDB Molecule:adenylate cyclase;
PDBTitle: crystal structure of a mutant form of the mycobacterial2 adenylyl cyclase rv1625c
24d1azsb_



not modelled 100.0 15
Fold:Ferredoxin-like
Superfamily:Nucleotide cyclase
Family:Adenylyl and guanylyl cyclase catalytic domain
25c6aoaA_



not modelled 100.0 22
PDB header:lyase
Chain: A: PDB Molecule:bacterio-rhodopsin/guanylyl cyclase 1 fusion protein;
PDBTitle: monomeric crystal structure of the e497/c566d double mutant of the2 guanylyl cyclase domain of the rhogc fusion protein from the aquatic3 fungus blastocladiella emersonii
26c2qv6D_



not modelled 96.9 17
PDB header:hydrolase
Chain: D: PDB Molecule:gtp cyclohydrolase iii;
PDBTitle: gtp cyclohydrolase iii from m. jannaschii (mj0145)2 complexed with gtp and metal ions
27c4zmuD_



not modelled 88.4 13
PDB header:lyase
Chain: D: PDB Molecule:diguanylate cyclase;
PDBTitle: dcsbis, a diguanylate cyclase from pseudomonas aeruginosa
28c1w25B_



not modelled 88.1 14
PDB header:signaling protein
Chain: B: PDB Molecule:stalked-cell differentiation controlling protein;
PDBTitle: response regulator pled in complex with c-digmp
29c3ezuA_



not modelled 87.9 22
PDB header:signaling protein
Chain: A: PDB Molecule:ggdef domain protein;
PDBTitle: crystal structure of multidomain protein of unknown function with2 ggdef-domain (np_951600.1) from geobacter sulfurreducens at 1.95 a3 resolution
30c6d9mA_



not modelled 87.4 17
PDB header:hydrolase
Chain: A: PDB Molecule:fusion protein of endolysin,response receiver sensor
PDBTitle: t4-lysozyme fusion to geobacter ggdef
31c3ignA_



not modelled 85.7 12
PDB header:transferase
Chain: A: PDB Molecule:diguanylate cyclase;
PDBTitle: crystal structure of the ggdef domain from marinobacter aquaeolei2 diguanylate cyclase complexed with c-di-gmp - northeast structural3 genomics consortium target mqr89a
32c3mtkA_



not modelled 79.5 14
PDB header:transferase
Chain: A: PDB Molecule:diguanylate cyclase/phosphodiesterase;
PDBTitle: x-ray structure of diguanylate cyclase/phosphodiesterase from2 caldicellulosiruptor saccharolyticus, northeast structural genomics3 consortium target clr27c
33c4wxoA_



not modelled 78.2 13
PDB header:transferase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: sadc (300-487) from pseudomonas aeruginosa pao1
34c5llxB_



not modelled 76.8 12
PDB header:transferase
Chain: B: PDB Molecule:diguanylate cyclase (ggdef) domain-containing protein;
PDBTitle: bacteriophytochrome activated diguanylyl cyclase from idiomarina2 species a28l with gtp bound
35c3breA_



not modelled 76.0 22
PDB header:signaling protein
Chain: A: PDB Molecule:probable two-component response regulator;
PDBTitle: crystal structure of p.aeruginosa pa3702
36c3i5aA_



not modelled 75.3 20
PDB header:signaling protein
Chain: A: PDB Molecule:response regulator/ggdef domain protein;
PDBTitle: crystal structure of full-length wpsr from pseudomonas syringae
37c3hvwA_



not modelled 73.9 10
PDB header:lyase
Chain: A: PDB Molecule:diguanylate-cyclase (dgc);
PDBTitle: crystal structure of the ggdef domain of the pa2567 protein from2 pseudomonas aeruginosa, northeast structural genomics consortium3 target par365c
38c4w8yA_



not modelled 73.8 13
PDB header:rna binding protein
Chain: A: PDB Molecule:crispr system cmr subunit cmr2;
PDBTitle: structure of full length cmr2 from pyrococcus furiosus (manganese2 bound form)
39c4h54B_



not modelled 71.2 16
PDB header:transferase
Chain: B: PDB Molecule:diguanylate cyclase ydeh;
PDBTitle: crystal structure of the diguanylate cyclase dgcz
40c3hvaA_



not modelled 70.0 17
PDB header:transferase
Chain: A: PDB Molecule:protein fimx;
PDBTitle: crystal structure of fimx ggdef domain from pseudomonas aeruginosa
41c3ungC_



not modelled 67.3 14
PDB header:unknown function
Chain: C: PDB Molecule:cmr2dhd;
PDBTitle: structure of the cmr2 subunit of the crispr rna silencing complex
42c3qyyB_



not modelled 59.8 11
PDB header:signaling protein/inhibitor
Chain: B: PDB Molecule:response regulator;
PDBTitle: a novel interaction mode between a microbial ggdef domain and the bis-2 (3, 5 )-cyclic di-gmp
43c3iclA_



not modelled 58.5 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:eal/ggdef domain protein;
PDBTitle: x-ray structure of protein (eal/ggdef domain protein) from2 m.capsulatus, northeast structural genomics consortium target mcr174c
44c4urgB_



not modelled 56.1 15
PDB header:lyase
Chain: B: PDB Molecule:diguanylate cyclase;
PDBTitle: crystal structure of ggdef domain from t.maritima (active-like dimer)
45c4zvhB_



not modelled 49.7 15
PDB header:signaling protein
Chain: B: PDB Molecule:diguanylate cyclase dosc;
PDBTitle: crystal structure of ggdef domain of the e. coli dosc - form iv
46c4euvA_



not modelled 49.0 11
PDB header:signaling protein
Chain: A: PDB Molecule:peld;
PDBTitle: crystal structure of peld 158-ct from pseudomonas aeruginosa pao1, in2 complex with c-di-gmp, form 1
47c4dmzB_



not modelled 43.8 14
PDB header:nucleotide-binding protein
Chain: B: PDB Molecule:putative uncharacterized protein peld;
PDBTitle: peld 156-455 from pseudomonas aeruginosa pa14, apo form
48c6eibC_



not modelled 43.4 11
PDB header:transferase
Chain: C: PDB Molecule:sensory box/ggdef family protein;
PDBTitle: structure of the active ggeef domain of a diguanylate cyclase from2 vibrio cholerae.
49c4iobA_



not modelled 42.9 18
PDB header:lyase
Chain: A: PDB Molecule:diguanylate cyclase tpbb;
PDBTitle: crystal structure of the ggdef domain of pa1120 (yfin or tpbb) from2 pseudomonas aeruginosa at 2.7 ang.
50c5euhA_



not modelled 42.3 19
PDB header:membrane protein
Chain: A: PDB Molecule:putative ggdef domain membrane protein;
PDBTitle: crystal structure of the c-di-gmp-bound ggdef domain of p. fluorescens2 gcbc
51c4ymeA_



not modelled 36.3 16
PDB header:lyase
Chain: A: PDB Molecule:sensory box/ggdef family protein;
PDBTitle: crystal structure of a sensory box/ggdef family protein (cc_0091) from2 caulobacter crescentus cb15 at 1.40 a resolution (psi community3 target, shapiro)
52c3i5cA_



not modelled 35.6 18
PDB header:signaling protein
Chain: A: PDB Molecule:fusion of general control protein gcn4 and wspr response
PDBTitle: crystal structure of a fusion protein containing the leucine zipper of2 gcn4 and the ggdef domain of wspr from pseudomonas aeruginosa
53c4zmmB_



not modelled 35.3 12
PDB header:transferase
Chain: B: PDB Molecule:diguanylate cyclase;
PDBTitle: ggdef domain of dcsbis complexed with c-di-gmp
54d1w25a3



not modelled 30.8 16
Fold:Ferredoxin-like
Superfamily:Nucleotide cyclase
Family:GGDEF domain
55d1ufwa_



not modelled 23.9 17
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
56c2vg2C_



not modelled 21.8 15
PDB header:transferase
Chain: C: PDB Molecule:undecaprenyl pyrophosphate synthetase;
PDBTitle: rv2361 with ipp
57d2coha2



not modelled 21.4 13
Fold:Double-stranded beta-helix
Superfamily:cAMP-binding domain-like
Family:cAMP-binding domain
58c3tvkA_



not modelled 16.0 14
PDB header:transferase
Chain: A: PDB Molecule:diguanylate cyclase dgcz;
PDBTitle: diguanylate cyclase domain of dgcz
59c3k1qA_



not modelled 15.8 50
PDB header:
PDB COMPND:
60c5apgA_



not modelled 15.7 16
PDB header:transferase
Chain: A: PDB Molecule:tsr3;
PDBTitle: structure of the sam-dependent rrna:acp-transferase tsr32 from vulcanisaeta distributa
61c2cseU_



not modelled 15.0 29
PDB header:virus
Chain: U: PDB Molecule:guanylyltransferase;
PDBTitle: features of reovirus outer-capsid protein mu1 revealed by2 electron and image reconstruction of the virion at 7.0-a3 resolution
62c3i5bA_



not modelled 12.5 20
PDB header:signaling protein
Chain: A: PDB Molecule:wspr response regulator;
PDBTitle: crystal structure of the isolated ggdef domain of wpsr from2 pseudomonas aeruginosa
63c5m3cB_



not modelled 12.3 11
PDB header:hydrolase
Chain: B: PDB Molecule:diguanylate cyclase;
PDBTitle: structure of the hybrid domain (ggdef-eal) of pa0575 from pseudomonas2 aeruginosa pao1 at 2.8 ang. with gtp and ca2+ bound to the active3 site of the ggdef domain
64c6acsA_



not modelled 11.2 17
PDB header:transferase
Chain: A: PDB Molecule:ditrans,polycis-undecaprenyl-diphosphate synthase ((2e,6e)-
PDBTitle: poly-cis-prenyltransferase
65c4h8eA_



not modelled 10.4 8
PDB header:transferase/transferase inhibitor
Chain: A: PDB Molecule:undecaprenyl pyrophosphate synthase;
PDBTitle: structure of s. aureus undecaprenyl diphosphate synthase in complex2 with fpp and sulfate
66c1yvrA_



not modelled 9.4 16
PDB header:rna binding protein
Chain: A: PDB Molecule:60-kda ss-a/ro ribonucleoprotein;
PDBTitle: ro autoantigen
67d1veha_



not modelled 8.8 12
Fold:Alpha-lytic protease prodomain-like
Superfamily:Fe-S cluster assembly (FSCA) domain-like
Family:NifU C-terminal domain-like
68c2hnkC_



not modelled 8.4 18
PDB header:transferase
Chain: C: PDB Molecule:sam-dependent o-methyltransferase;
PDBTitle: crystal structure of sam-dependent o-methyltransferase from pathogenic2 bacterium leptospira interrogans
69c4q9mA_



not modelled 8.1 12
PDB header:transferase/transferase inhibitor
Chain: A: PDB Molecule:isoprenyl transferase;
PDBTitle: crystal structure of upps in complex with fpp and an allosteric2 inhibitor
70c5a4aA_



not modelled 7.7 24
PDB header:rna binding protein
Chain: A: PDB Molecule:maternal effect protein oskar;
PDBTitle: crystal structure of the osk domain of drosophila oskar
71c6f0kD_



not modelled 7.0 10
PDB header:membrane protein
Chain: D: PDB Molecule:actd;
PDBTitle: alternative complex iii
72c5hc7A_



not modelled 6.9 8
PDB header:transferase/transferase inhibitor
Chain: A: PDB Molecule:prenyltransference for protein;
PDBTitle: crystal structure of lavandulyl diphosphate synthase from lavandula x2 intermedia in complex with s-thiolo-isopentenyldiphosphate
73d2qtva1



not modelled 6.8 21
Fold:ERP29 C domain-like
Superfamily:Helical domain of Sec23/24
Family:Helical domain of Sec23/24
74c4lrvL_



not modelled 6.7 54
PDB header:dna binding protein
Chain: L: PDB Molecule:dna sulfur modification protein dnde;
PDBTitle: crystal structure of dnde from escherichia coli b7a involved in dna2 phosphorothioation modification
75c3dmyA_



not modelled 6.7 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein fdra;
PDBTitle: crystal structure of a predicated acyl-coa synthetase from e.coli
76d1r31a1



not modelled 6.3 9
Fold:Ferredoxin-like
Superfamily:NAD-binding domain of HMG-CoA reductase
Family:NAD-binding domain of HMG-CoA reductase
77c2y0fD_



not modelled 6.3 13
PDB header:oxidoreductase
Chain: D: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase;
PDBTitle: structure of gcpe (ispg) from thermus thermophilus hb27
78c3gczA_



not modelled 6.3 17
PDB header:transferase
Chain: A: PDB Molecule:polyprotein;
PDBTitle: yokose virus methyltransferase in complex with adomet
79c6ifnA_



not modelled 5.9 14
PDB header:rna binding protein
Chain: A: PDB Molecule:type iii-a crispr-associated protein csm1;
PDBTitle: crystal structure of type iii-a crispr csm complex
80d2es7a1



not modelled 5.7 21
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:HyaE-like
81d2fiua1



not modelled 5.6 23
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Atu0297-like
82c3noyA_



not modelled 5.6 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase;
PDBTitle: crystal structure of ispg (gcpe)
83c2w3xE_



not modelled 5.5 13
PDB header:hydrolase
Chain: E: PDB Molecule:cale7;
PDBTitle: crystal structure of a bifunctional hotdog fold2 thioesterase in enediyne biosynthesis, cale7
84d1bala_



not modelled 5.5 30
Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
85c4js0B_



not modelled 5.4 45
PDB header:signaling protein/signaling protein
Chain: B: PDB Molecule:brain-specific angiogenesis inhibitor 1-associated protein
PDBTitle: complex of cdc42 with the crib-pr domain of irsp53
86c3zi1A_



not modelled 5.3 24
PDB header:isomerase
Chain: A: PDB Molecule:glyoxalase domain-containing protein 4;
PDBTitle: crystal structure of human glyoxalase domain-containing protein 42 (glod4)
87c3cbgA_



not modelled 5.3 13
PDB header:transferase
Chain: A: PDB Molecule:o-methyltransferase;
PDBTitle: functional and structural characterization of a cationdependent o-2 methyltransferase from the cyanobacterium synechocystis sp. strain3 pcc 6803

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