Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0896_(gltA)_999475_1000770
DateFri Jul 26 01:50:48 BST 2019
Unique Job IDcd9ad98e7b62ba04
SequenceVADTDDTATL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:66.851 Y:72.834 Z:64.208
Model (left) based on template c2h12C_
Top template information
PDB header:transferase
Chain: C: PDB Molecule:citrate synthase;
PDBTitle: structure of acetobacter aceti citrate synthase complexed with2 oxaloacetate and carboxymethyldethia coenzyme a (cmx)
Confidence and coverage
Confidence:100.0% Coverage: 98%
424 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2h12C_
100.0 53
PDB header:transferase
Chain: C: PDB Molecule:citrate synthase;
PDBTitle: structure of acetobacter aceti citrate synthase complexed with2 oxaloacetate and carboxymethyldethia coenzyme a (cmx)
2d1k3pa_
100.0 53
Fold:Citrate synthase
Superfamily:Citrate synthase
Family:Citrate synthase
3c3msuA_
100.0 47
PDB header:transferase
Chain: A: PDB Molecule:citrate synthase;
PDBTitle: crystal structure of citrate synthase from francisella tularensis
4c4tvmA_
100.0 98
PDB header:transferase
Chain: A: PDB Molecule:citrate synthase;
PDBTitle: structure of citrate synthase from mycobacterium tuberculosis
5c4xghA_
100.0 54
PDB header:transferase
Chain: A: PDB Molecule:citrate synthase;
PDBTitle: x-ray crystal structure of citrate synthase from burkholderia2 thailandensis
6c2ibpB_
100.0 39
PDB header:transferase
Chain: B: PDB Molecule:citrate synthase;
PDBTitle: crystal structure of citrate synthase from pyrobaculum aerophilum
7d1aj8a_
100.0 37
Fold:Citrate synthase
Superfamily:Citrate synthase
Family:Citrate synthase
8d1csca_
100.0 28
Fold:Citrate synthase
Superfamily:Citrate synthase
Family:Citrate synthase
9d1ioma_
100.0 35
Fold:Citrate synthase
Superfamily:Citrate synthase
Family:Citrate synthase
10c1vgmB_
100.0 36
PDB header:transferase
Chain: B: PDB Molecule:378aa long hypothetical citrate synthase;
PDBTitle: crystal structure of an isozyme of citrate synthase from sulfolbus2 tokodaii strain7
11d1csha_
100.0 29
Fold:Citrate synthase
Superfamily:Citrate synthase
Family:Citrate synthase
12c1vgpA_
100.0 39
PDB header:transferase
Chain: A: PDB Molecule:373aa long hypothetical citrate synthase;
PDBTitle: crystal structure of an isozyme of citrate synthase from sulfolbus2 tokodaii strain7
13c2r26C_
100.0 32
PDB header:transferase
Chain: C: PDB Molecule:citrate synthase;
PDBTitle: the structure of the ternary complex of carboxymethyl2 coenzyme a and oxalateacetate with citrate synthase from3 the thermophilic archaeonthermoplasma acidophilum
14d2ctsa_
100.0 30
Fold:Citrate synthase
Superfamily:Citrate synthase
Family:Citrate synthase
15c6abxA_
100.0 40
PDB header:transferase
Chain: A: PDB Molecule:citrate synthase;
PDBTitle: crystal structure of citrate synthase (msed_1522) from metallosphaera2 sedula in complex with citrate
16c3hwkE_
100.0 32
PDB header:transferase
Chain: E: PDB Molecule:methylcitrate synthase;
PDBTitle: crystal structure of methylcitrate synthase from mycobacterium2 tuberculosis
17d1a59a_
100.0 37
Fold:Citrate synthase
Superfamily:Citrate synthase
Family:Citrate synthase
18d1o7xa_
100.0 34
Fold:Citrate synthase
Superfamily:Citrate synthase
Family:Citrate synthase
19c2p2wA_
100.0 40
PDB header:transferase
Chain: A: PDB Molecule:citrate synthase;
PDBTitle: crystal structure of citrate synthase from thermotoga maritima msb8
20c3tqgA_
100.0 32
PDB header:transferase
Chain: A: PDB Molecule:2-methylcitrate synthase;
PDBTitle: structure of the 2-methylcitrate synthase (prpc) from coxiella2 burnetii
21c2c6xA_
not modelled 100.0 35
PDB header:transferase
Chain: A: PDB Molecule:citrate synthase 1;
PDBTitle: structure of bacillus subtilis citrate synthase
22c3o8jH_
not modelled 100.0 33
PDB header:transferase
Chain: H: PDB Molecule:2-methylcitrate synthase;
PDBTitle: crystal structure of 2-methylcitrate synthase (prpc) from salmonella2 typhimurium
23c5uqqD_
not modelled 100.0 27
PDB header:transferase
Chain: D: PDB Molecule:2-methylcitrate synthase, mitochondrial;
PDBTitle: crystal structure of 2-methylcitrate synthase from aspergillus2 fumigatus
24c6hxpA_
not modelled 100.0 25
PDB header:lyase
Chain: A: PDB Molecule:citryl-coa lyase;
PDBTitle: structure of citryl-coa lyase from hydrogenobacter thermophilus
25c6hxjB_
not modelled 100.0 27
PDB header:lyase
Chain: B: PDB Molecule:atp-citrate lyase alpha-subunit;
PDBTitle: structure of atp citrate lyase from chlorobium limicola in complex2 with citrate and coenzyme a.
26c6hxiD_
not modelled 100.0 27
PDB header:lyase
Chain: D: PDB Molecule:succinyl-coa ligase (adp-forming) subunit alpha;
PDBTitle: structure of atp citrate lyase from methanothrix soehngenii in complex2 with citrate and coenzyme a
27c6hxlD_
not modelled 100.0 30
PDB header:lyase
Chain: D: PDB Molecule:atp-citrate synthase;
PDBTitle: structure of the citryl-coa lyase core module of human atp citrate2 lyase in complex with citrate and coash (space group p21)
28c6hxoH_
not modelled 100.0 24
PDB header:lyase
Chain: H: PDB Molecule:atp-citrate lyase alpha-subunit;
PDBTitle: structure of the citryl-coa lyase core module of chlorobium limicola2 atp citrate lyase (space group p21)
29c6qfbB_
not modelled 100.0 31
PDB header:lyase
Chain: B: PDB Molecule:atp-citrate synthase;
PDBTitle: structure of the human atp citrate lyase holoenzyme in complex with2 citrate, coenzyme a and mg.adp
30c6hxoE_
not modelled 100.0 22
PDB header:lyase
Chain: E: PDB Molecule:atp-citrate lyase alpha-subunit;
PDBTitle: structure of the citryl-coa lyase core module of chlorobium limicola2 atp citrate lyase (space group p21)
31c3zeyI_
not modelled 56.1 23
PDB header:ribosome
Chain: I: PDB Molecule:40s ribosomal protein s15, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
32d1ehia1
not modelled 48.0 19
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:D-Alanine ligase N-terminal domain
33c3j38P_
not modelled 46.1 33
PDB header:ribosome
Chain: P: PDB Molecule:40s ribosomal protein s15, isoform a;
PDBTitle: structure of the d. melanogaster 40s ribosomal proteins
34c2xzmS_
not modelled 41.0 41
PDB header:ribosome
Chain: S: PDB Molecule:rps15e;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
35c3j20T_
not modelled 35.9 38
PDB header:ribosome
Chain: T: PDB Molecule:30s ribosomal protein s19p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)
36c5xyiP_
not modelled 28.0 33
PDB header:ribosome
Chain: P: PDB Molecule:ribosomal protein s19, putative;
PDBTitle: small subunit of trichomonas vaginalis ribosome
37c5xxuP_
not modelled 25.9 29
PDB header:ribosome
Chain: P: PDB Molecule:ribosomal protein us19;
PDBTitle: small subunit of toxoplasma gondii ribosome
38d1e4ea1
not modelled 19.3 24
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:D-Alanine ligase N-terminal domain
39c6co6B_
not modelled 18.3 14
PDB header:hydrolase
Chain: B: PDB Molecule:probable coa-transferase beta subunit;
PDBTitle: crystal structure of rhodococcus jostii rha1 ipdab
40c2l0cA_
not modelled 17.2 60
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative membrane protein;
PDBTitle: solution nmr structure of protein sty4237 (residues 36-120) from2 salmonella enterica, northeast structural genomics consortium target3 slr115
41c2nx9B_
not modelled 16.8 17
PDB header:lyase
Chain: B: PDB Molecule:oxaloacetate decarboxylase 2, subunit alpha;
PDBTitle: crystal structure of the carboxyltransferase domain of the2 oxaloacetate decarboxylase na+ pump from vibrio cholerae
42c3c65A_
not modelled 16.2 13
PDB header:hydrolase
Chain: A: PDB Molecule:uvrabc system protein c;
PDBTitle: crystal structure of bacillus stearothermophilus uvrc 5' endonuclease2 domain
43d1khda2
not modelled 15.9 20
Fold:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
44c3sukB_
not modelled 15.8 24
PDB header:unknown function
Chain: B: PDB Molecule:cerato-platanin-like protein;
PDBTitle: crystal structure of cerato-platanin 2 from m. perniciosa (mpcp2)
45c4pxuA_
not modelled 15.7 16
PDB header:cell cycle
Chain: A: PDB Molecule:bipolar kinesin krp-130;
PDBTitle: structural basis for the assembly of the mitotic motor kinesin-5 into2 bipolar tetramers
46c2e28A_
not modelled 14.5 20
PDB header:transferase
Chain: A: PDB Molecule:pyruvate kinase;
PDBTitle: crystal structure analysis of pyruvate kinase from bacillus2 stearothermophilus
47c3mesB_
not modelled 14.5 16
PDB header:transferase
Chain: B: PDB Molecule:choline kinase;
PDBTitle: crystal structure of choline kinase from cryptosporidium2 parvum iowa ii, cgd3_2030
48c3fcgB_
not modelled 14.0 9
PDB header:membrane protein, protein transport
Chain: B: PDB Molecule:f1 capsule-anchoring protein;
PDBTitle: crystal structure analysis of the middle domain of the2 caf1a usher
49c5lnk3_
not modelled 12.9 11
PDB header:oxidoreductase
Chain: 3: PDB Molecule:mitochondrial complex i, 75 kda subunit;
PDBTitle: entire ovine respiratory complex i
50c5xxuR_
not modelled 12.7 21
PDB header:ribosome
Chain: R: PDB Molecule:ribosomal protein es17;
PDBTitle: small subunit of toxoplasma gondii ribosome
51c5n02B_
not modelled 12.5 21
PDB header:lyase
Chain: B: PDB Molecule:glutaconate coa-transferase family, subunit b;
PDBTitle: crystal structure of the decarboxylase aiba/aibb c56s variant
52c2ckpB_
not modelled 11.9 16
PDB header:transferase
Chain: B: PDB Molecule:choline kinase alpha;
PDBTitle: crystal structure of human choline kinase alpha-2 in2 complex with adp
53d1poib_
not modelled 11.7 13
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase beta subunit-like
54c2i81B_
not modelled 10.7 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:2-cys peroxiredoxin;
PDBTitle: crystal structure of plasmodium vivax 2-cys peroxiredoxin,2 reduced
55c3izbQ_
not modelled 10.5 26
PDB header:ribosome
Chain: Q: PDB Molecule:40s ribosomal protein rps17 (s17e);
PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
56c3t07D_
not modelled 10.0 19
PDB header:transferase/transferase inhibitor
Chain: D: PDB Molecule:pyruvate kinase;
PDBTitle: crystal structure of s. aureus pyruvate kinase in complex with a2 naturally occurring bis-indole alkaloid
57c3c5iD_
not modelled 10.0 10
PDB header:transferase
Chain: D: PDB Molecule:choline kinase;
PDBTitle: crystal structure of plasmodium knowlesi choline kinase, pkh_134520
58c5x6bF_
not modelled 9.2 31
PDB header:rna binding protein/rna
Chain: F: PDB Molecule:uncharacterized protein mj1481;
PDBTitle: crystal structure of sepcyse-sepcyss in complex with trnacys from2 methanocaldococcus jannaschii
59c3lmaC_
not modelled 9.0 19
PDB header:membrane protein
Chain: C: PDB Molecule:stage v sporulation protein ad (spovad);
PDBTitle: crystal structure of the stage v sporulation protein ad (spovad) from2 bacillus licheniformis. northeast structural genomics consortium3 target bir6.
60c3j3aR_
not modelled 8.9 16
PDB header:ribosome
Chain: R: PDB Molecule:40s ribosomal protein s17;
PDBTitle: structure of the human 40s ribosomal proteins
61c3o30I_
not modelled 8.6 24
PDB header:ribosome
Chain: I: PDB Molecule:40s ribosomal protein s15;
PDBTitle: yeast 80s ribosome. this entry consists of the 40s subunit of the2 second 80s in the asymmetric unit.
62c1c4cA_
not modelled 8.6 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:protein (fe-only hydrogenase);
PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum
63c5xf9F_
not modelled 8.6 13
PDB header:oxidoreductase
Chain: F: PDB Molecule:nad-reducing hydrogenase;
PDBTitle: crystal structure of nad+-reducing [nife]-hydrogenase in the air-2 oxidized state
64c2fugC_
not modelled 8.5 7
PDB header:oxidoreductase
Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3;
PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus
65c3zu3A_
not modelled 8.4 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative reductase ypo4104/y4119/yp_4011;
PDBTitle: structure of the enoyl-acp reductase fabv from yersinia pestis with2 the cofactor nadh (mr, cleaved histag)
66c3kgkA_
not modelled 8.3 31
PDB header:chaperone
Chain: A: PDB Molecule:arsenical resistance operon trans-acting repressor arsd;
PDBTitle: crystal structure of arsd
67c6conF_
not modelled 8.3 16
PDB header:hydrolase
Chain: F: PDB Molecule:coa-transferase subunit beta;
PDBTitle: crystal structure of mycobacterium tuberculosis ipdab
68c2r9qD_
not modelled 8.1 22
PDB header:hydrolase
Chain: D: PDB Molecule:2'-deoxycytidine 5'-triphosphate deaminase;
PDBTitle: crystal structure of 2'-deoxycytidine 5'-triphosphate deaminase from2 agrobacterium tumefaciens
69c3ktbD_
not modelled 7.9 23
PDB header:transcription regulator
Chain: D: PDB Molecule:arsenical resistance operon trans-acting repressor;
PDBTitle: crystal structure of arsenical resistance operon trans-acting2 repressor from bacteroides vulgatus atcc 8482
70c5t59D_
not modelled 7.8 7
PDB header:cell cycle
Chain: D: PDB Molecule:klla0f02343p;
PDBTitle: structure of the mind complex shows a regulatory focus of yeast2 kinetochore assembly
71d1kbla2
not modelled 7.8 42
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:Phosphohistidine domain
Family:Pyruvate phosphate dikinase, central domain
72c3w6gP_
not modelled 7.6 25
PDB header:oxidoreductase
Chain: P: PDB Molecule:probable peroxiredoxin;
PDBTitle: structure of peroxiredoxin from anaerobic hyperthermophilic archaeon2 pyrococcus horikoshii
73c4rvgA_
not modelled 7.5 21
PDB header:transferase
Chain: A: PDB Molecule:d-mycarose 3-c-methyltransferase;
PDBTitle: crystal structure of mtmc in complex with sam and tdp
74c3j3bF_
not modelled 7.3 20
PDB header:ribosome
Chain: F: PDB Molecule:60s ribosomal protein l7;
PDBTitle: structure of the human 60s ribosomal proteins
75c1tllA_
not modelled 7.1 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitric-oxide synthase, brain;
PDBTitle: crystal structure of rat neuronal nitric-oxide synthase2 reductase module at 2.3 a resolution.
76c1fctA_
not modelled 7.1 43
PDB header:transit peptide
Chain: A: PDB Molecule:ferredoxin chloroplastic transit peptide
PDBTitle: nmr structures of ferredoxin chloroplastic transit peptide2 from chlamydomonas reinhardtii promoted by3 trifluoroethanol in aqueous solution
77d1m1ha1
not modelled 7.1 26
Fold:N-utilization substance G protein NusG, insert domain
Superfamily:N-utilization substance G protein NusG, insert domain
Family:N-utilization substance G protein NusG, insert domain
78c1ynmA_
not modelled 7.0 33
PDB header:hydrolase
Chain: A: PDB Molecule:r.hinp1i restriction endonuclease;
PDBTitle: crystal structure of restriction endonuclease hinp1i
79c5vylA_
not modelled 6.9 11
PDB header:viral protein
Chain: A: PDB Molecule:inner tegument protein;
PDBTitle: crystal structure of n-terminal half of herpes simplex virus type 12 ul37 protein
80c4c92B_
not modelled 6.9 19
PDB header:transcription
Chain: B: PDB Molecule:u6 snrna-associated sm-like protein lsm2;
PDBTitle: crystal structure of the yeast lsm1-7 complex
81d1f0la3
not modelled 6.8 23
Fold:Toxins' membrane translocation domains
Superfamily:Diphtheria toxin, middle domain
Family:Diphtheria toxin, middle domain
82d1mula_
not modelled 6.8 16
Fold:IHF-like DNA-binding proteins
Superfamily:IHF-like DNA-binding proteins
Family:Prokaryotic DNA-bending protein
83c5foeA_
not modelled 6.7 24
PDB header:transferase
Chain: A: PDB Molecule:gdp-fucose protein o-fucosyltransferase 2,thrombospondin-1;
PDBTitle: crystal structure of the c. elegans protein o-fucosyltransferase 22 (cepofut2) double mutant (r298k-r299k) in complex with gdp and the3 human tsr1 from thrombospondin 1
84c3ajvD_
not modelled 6.6 43
PDB header:hydrolase
Chain: D: PDB Molecule:trna-splicing endonuclease;
PDBTitle: splicing endonuclease from aeropyrum pernix
85c3sulA_
not modelled 6.6 22
PDB header:unknown function
Chain: A: PDB Molecule:cerato-platanin-like protein;
PDBTitle: crystal structure of cerato-platanin 3 from m. perniciosa (mpcp3)
86c3j39F_
not modelled 6.6 25
PDB header:ribosome
Chain: F: PDB Molecule:60s ribosomal protein l7;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
87c5zteA_
not modelled 6.4 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:2-cys peroxiredoxin bas1, chloroplastic;
PDBTitle: crystal structure of prxa c119s mutant from arabidopsis thaliana
88c6hu9u_
not modelled 6.4 7
PDB header:oxidoreductase/electron transport
Chain: U: PDB Molecule:cytochrome b-c1 complex subunit 10;
PDBTitle: iii2-iv2 mitochondrial respiratory supercomplex from s. cerevisiae
89c2qg7A_
not modelled 6.4 18
PDB header:transferase
Chain: A: PDB Molecule:ethanolamine kinase pv091845;
PDBTitle: plasmodium vivax ethanolamine kinase pv091845
90c5ovqL_
not modelled 6.3 24
PDB header:oxidoreductase
Chain: L: PDB Molecule:peroxiredoxin;
PDBTitle: crystal structure of the peroxiredoxin (ahpc2) from the2 hyperthermophilic bacteria aquifex aeolicus vf
91c2rf4A_
not modelled 6.2 6
PDB header:transferase
Chain: A: PDB Molecule:dna-directed rna polymerase i subunit rpa4;
PDBTitle: crystal structure of the rna polymerase i subcomplex a14/43
92c2yzjB_
not modelled 5.9 16
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:167aa long hypothetical dutpase;
PDBTitle: crystal structure of dctp deaminase from sulfolobus tokodaii
93c2lmcA_
not modelled 5.9 10
PDB header:transcription
Chain: A: PDB Molecule:bacterial rna polymerase inhibitor;
PDBTitle: structure of t7 transcription factor gp2-e. coli rnap jaw domain2 complex
94c2wnmA_
not modelled 5.9 10
PDB header:hydrolase
Chain: A: PDB Molecule:gene 2;
PDBTitle: solution structure of gp2
95c2rilA_
not modelled 5.8 9
PDB header:oxidoreductase
Chain: A: PDB Molecule:antibiotic biosynthesis monooxygenase;
PDBTitle: crystal structure of a putative monooxygenase (yp_001095275.1) from2 shewanella loihica pv-4 at 1.26 a resolution
96c5nd1A_
not modelled 5.8 29
PDB header:virus
Chain: A: PDB Molecule:capsid protein;
PDBTitle: viral evolution results in multiple, surface-allocated enzymatic2 activities in a fungal double-stranded rna virus
97d1b8za_
not modelled 5.8 20
Fold:IHF-like DNA-binding proteins
Superfamily:IHF-like DNA-binding proteins
Family:Prokaryotic DNA-bending protein
98d1ioka2
not modelled 5.8 41
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:GroEL apical domain-like
Family:GroEL-like chaperone, apical domain
99d2huec1
not modelled 5.7 25
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones

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