Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0898c_(-)_1002444_1002707
DateFri Jul 26 01:50:49 BST 2019
Unique Job ID35499dfdadf84089
SequenceMGKGRKPTDS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:48.971 Y:41.749 Z:28.996
Model (left) based on template c4pxjB_
Top template information
PDB header:protein binding
Chain: B: PDB Molecule:c-jun-amino-terminal kinase-interacting protein 3;
PDBTitle: crystallographic structure of the lzii fragment (anti-parallel2 orientation) from jip3
Confidence and coverage
Confidence: 42.9% Coverage: 48%
42 residues ( 48% of your sequence) have been modelled with 42.9% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4pxjB_
42.9 21
PDB header:protein binding
Chain: B: PDB Molecule:c-jun-amino-terminal kinase-interacting protein 3;
PDBTitle: crystallographic structure of the lzii fragment (anti-parallel2 orientation) from jip3
2d1kvka2
42.1 15
Fold:Ferredoxin-like
Superfamily:GHMP Kinase, C-terminal domain
Family:Mevalonate kinase
3c2v8sV_
38.3 12
PDB header:protein transport
Chain: V: PDB Molecule:vesicle transport through interaction with
PDBTitle: vti1b habc domain - epsinr enth domain complex
4d1vcsa1
36.0 25
Fold:STAT-like
Superfamily:t-snare proteins
Family:t-snare proteins
5d1k1fa_
29.2 25
Fold:Bcr-Abl oncoprotein oligomerization domain
Superfamily:Bcr-Abl oncoprotein oligomerization domain
Family:Bcr-Abl oncoprotein oligomerization domain
6c3onjA_
26.7 25
PDB header:protein transport
Chain: A: PDB Molecule:t-snare vti1;
PDBTitle: crystal structure of yeast vti1p_habc domain
7c3qzcA_
24.7 15
PDB header:signaling protein
Chain: A: PDB Molecule:periplasmic protein cpxp;
PDBTitle: structure of the periplasmic stress response protein cpxp
8d1jkwa2
24.7 21
Fold:Cyclin-like
Superfamily:Cyclin-like
Family:Cyclin
9c5e9fD_
24.2 18
PDB header:lyase
Chain: D: PDB Molecule:isocitrate lyase;
PDBTitle: structural insights of isocitrate lyases from magnaporthe oryzae
10c4eo3A_
21.9 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:bacterioferritin comigratory protein/nadh dehydrogenase;
PDBTitle: peroxiredoxin nitroreductase fusion enzyme
11c3itfA_
21.7 15
PDB header:signaling protein
Chain: A: PDB Molecule:periplasmic adaptor protein cpxp;
PDBTitle: structural basis for the inhibitory function of the cpxp adaptor2 protein
12c2mp6A_
20.1 45
PDB header:signaling protein
Chain: A: PDB Molecule:suppressor of cytokine signaling 5;
PDBTitle: structure and function of the jak interaction region in the2 intrinsically disordered n-terminus of socs5
13c5al6A_
20.0 42
PDB header:structural protein
Chain: A: PDB Molecule:anastral spindle 2;
PDBTitle: central coiled-coil domain (cccd) of drosophila melanogaster ana2. a2 natural, parallel, tetrameric coiled-coil bundle.
14d3fapb_
17.5 38
Fold:Four-helical up-and-down bundle
Superfamily:FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)
Family:FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)
15c2xqoA_
17.1 24
PDB header:hydrolase
Chain: A: PDB Molecule:cellulosome enzyme, dockerin type i;
PDBTitle: ctcel124: a cellulase from clostridium thermocellum
16c4h62V_
16.8 50
PDB header:transcription
Chain: V: PDB Molecule:mediator of rna polymerase ii transcription subunit 22;
PDBTitle: structure of the saccharomyces cerevisiae mediator subcomplex2 med17c/med11c/med22c
17c2q9rA_
15.7 21
PDB header:unknown function
Chain: A: PDB Molecule:protein of unknown function;
PDBTitle: crystal structure of a duf416 family protein (sbal_3149) from2 shewanella baltica os155 at 1.91 a resolution
18c6c0fw_
15.2 39
PDB header:ribosome
Chain: W: PDB Molecule:nucleolar gtp-binding protein 1;
PDBTitle: yeast nucleolar pre-60s ribosomal subunit (state 2)
19c4fg5B_
14.6 27
PDB header:hydrolase
Chain: B: PDB Molecule:e3 alpha-esterase-7 caboxylesterase;
PDBTitle: crystal structure of the alpha-esterase-7 carboxylesterase, e3, from2 lucilia cuprina
20c6e28D_
13.3 29
PDB header:signaling protein
Chain: D: PDB Molecule:caspase recruitment domain-containing protein 9;
PDBTitle: the card9 card domain-swapped dimer
21c5a2gB_
not modelled 11.9 27
PDB header:hydrolase
Chain: B: PDB Molecule:carboxylic ester hydrolase;
PDBTitle: an esterase from anaerobic clostridium hathewayi can2 hydrolyze aliphatic aromatic polyesters
22c4bxtH_
not modelled 11.7 39
PDB header:viral protein
Chain: H: PDB Molecule:phosphoprotein p;
PDBTitle: crystal structure of the human metapneumovirus2 phosphoprotein tetramerization domain
23c5oiyF_
not modelled 11.6 39
PDB header:viral protein
Chain: F: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 2.2 a
24c5oixH_
not modelled 11.3 39
PDB header:viral protein
Chain: H: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 1.6 a
25c5oixD_
not modelled 11.3 39
PDB header:viral protein
Chain: D: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 1.6 a
26c4bxtA_
not modelled 11.3 39
PDB header:viral protein
Chain: A: PDB Molecule:phosphoprotein p;
PDBTitle: crystal structure of the human metapneumovirus2 phosphoprotein tetramerization domain
27c5oiyD_
not modelled 11.3 39
PDB header:viral protein
Chain: D: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 2.2 a
28c4bxtC_
not modelled 11.2 39
PDB header:viral protein
Chain: C: PDB Molecule:phosphoprotein p;
PDBTitle: crystal structure of the human metapneumovirus2 phosphoprotein tetramerization domain
29c2epiA_
not modelled 10.1 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0045 protein mj1052;
PDBTitle: crystal structure pf hypothetical protein mj1052 from2 methanocaldococcus jannascii (form 2)
30c3fjuB_
not modelled 9.2 100
PDB header:hydrolase/hydrolase inhibitor
Chain: B: PDB Molecule:carboxypeptidase a inhibitor;
PDBTitle: ascaris suum carboxypeptidase inhibitor in complex with human2 carboxypeptidase a1
31c1tr8A_
not modelled 9.1 64
PDB header:chaperone
Chain: A: PDB Molecule:conserved protein (mth177);
PDBTitle: crystal structure of archaeal nascent polypeptide-associated complex2 (aenac)
32c5hytC_
not modelled 9.0 35
PDB header:immune system
Chain: C: PDB Molecule:precursor to protein sir22;
PDBTitle: structure of human c4b-binidng protein alpha chain ccp domains 1 and 22 in complex with the hypervariable region of group a streptococcus m223 protein
33c5hytE_
not modelled 9.0 35
PDB header:immune system
Chain: E: PDB Molecule:precursor to protein sir22;
PDBTitle: structure of human c4b-binidng protein alpha chain ccp domains 1 and 22 in complex with the hypervariable region of group a streptococcus m223 protein
34c4x3mB_
not modelled 8.8 29
PDB header:transferase
Chain: B: PDB Molecule:rna 2'-o ribose methyltransferase;
PDBTitle: crystal structure of ttha0275 from thermus thermophilus (hb8) in2 complex with adenosine in space group p212121
35c5hytA_
not modelled 8.7 35
PDB header:immune system
Chain: A: PDB Molecule:precursor to protein sir22;
PDBTitle: structure of human c4b-binidng protein alpha chain ccp domains 1 and 22 in complex with the hypervariable region of group a streptococcus m223 protein
36c5hytG_
not modelled 8.7 35
PDB header:immune system
Chain: G: PDB Molecule:precursor to protein sir22;
PDBTitle: structure of human c4b-binidng protein alpha chain ccp domains 1 and 22 in complex with the hypervariable region of group a streptococcus m223 protein
37c1dtcA_
not modelled 8.6 36
PDB header:toxin
Chain: A: PDB Molecule:acetyl-delta-toxin;
PDBTitle: delta-toxin and analogues as peptide models for protein ion2 channels
38c2dtbA_
not modelled 8.6 36
PDB header:toxin
Chain: A: PDB Molecule:delta-toxin;
PDBTitle: delta-toxin and analogues as peptide models for protein ion2 channels
39d1gz7a_
not modelled 8.6 23
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Fungal lipases
40d1thga_
not modelled 8.6 27
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Fungal lipases
41c2kamA_
not modelled 8.6 36
PDB header:toxin
Chain: A: PDB Molecule:delta-hemolysin;
PDBTitle: nmr structure of delta-toxin from staphylococcus aureus in2 cd3oh
42c4a56A_
not modelled 8.4 13
PDB header:protein transport
Chain: A: PDB Molecule:pullulanase secretion protein puls;
PDBTitle: crystal structure of the type 2 secretion system pilotin2 from klebsiella oxytoca
43d1oqya1
not modelled 8.4 36
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
44c3t6gC_
not modelled 8.2 58
PDB header:signaling protein, cell adhesion
Chain: C: PDB Molecule:sh2 domain-containing protein 3c;
PDBTitle: structure of the complex between nsp3 (shep1) and p130cas
45d1vk8a_
not modelled 8.0 21
Fold:Ferredoxin-like
Superfamily:MTH1187/YkoF-like
Family:MTH1187-like
46c3jslA_
not modelled 8.0 9
PDB header:ligase
Chain: A: PDB Molecule:dna ligase;
PDBTitle: crystal structure of the adenylation domain of nad+-2 dependent dna ligase from staphylococcus aureus
47c3utkA_
not modelled 7.6 26
PDB header:protein transport
Chain: A: PDB Molecule:lipoprotein outs;
PDBTitle: structure of the pilotin of the type ii secretion system
48c5oiyC_
not modelled 7.4 39
PDB header:viral protein
Chain: C: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 2.2 a
49c5oiyG_
not modelled 7.4 39
PDB header:viral protein
Chain: G: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 2.2 a
50c4bxtD_
not modelled 7.4 39
PDB header:viral protein
Chain: D: PDB Molecule:phosphoprotein p;
PDBTitle: crystal structure of the human metapneumovirus2 phosphoprotein tetramerization domain
51c5oixA_
not modelled 7.4 39
PDB header:viral protein
Chain: A: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 1.6 a
52c5oixE_
not modelled 7.4 39
PDB header:viral protein
Chain: E: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 1.6 a
53c5oiyE_
not modelled 7.4 39
PDB header:viral protein
Chain: E: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 2.2 a
54c6akkA_
not modelled 7.4 40
PDB header:protein binding
Chain: A: PDB Molecule:suppressor of ikbke 1;
PDBTitle: crystal structure of the second coiled-coil domain of sike1
55c5oixF_
not modelled 7.3 39
PDB header:viral protein
Chain: F: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 1.6 a
56c5oiyH_
not modelled 7.2 39
PDB header:viral protein
Chain: H: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 2.2 a
57c4bxtE_
not modelled 7.2 39
PDB header:viral protein
Chain: E: PDB Molecule:phosphoprotein p;
PDBTitle: crystal structure of the human metapneumovirus2 phosphoprotein tetramerization domain
58c4bxtF_
not modelled 7.2 39
PDB header:viral protein
Chain: F: PDB Molecule:phosphoprotein p;
PDBTitle: crystal structure of the human metapneumovirus2 phosphoprotein tetramerization domain
59c5oixB_
not modelled 7.2 39
PDB header:viral protein
Chain: B: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 1.6 a
60c4bxtB_
not modelled 7.2 39
PDB header:viral protein
Chain: B: PDB Molecule:phosphoprotein p;
PDBTitle: crystal structure of the human metapneumovirus2 phosphoprotein tetramerization domain
61c4bxtG_
not modelled 7.2 39
PDB header:viral protein
Chain: G: PDB Molecule:phosphoprotein p;
PDBTitle: crystal structure of the human metapneumovirus2 phosphoprotein tetramerization domain
62c5oiyB_
not modelled 7.2 39
PDB header:viral protein
Chain: B: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 2.2 a
63c5oiyA_
not modelled 7.2 39
PDB header:viral protein
Chain: A: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 2.2 a
64d1dqua_
not modelled 7.2 12
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like
65c5oixC_
not modelled 7.1 39
PDB header:viral protein
Chain: C: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 1.6 a
66d1lxja_
not modelled 7.0 29
Fold:Ferredoxin-like
Superfamily:MTH1187/YkoF-like
Family:MTH1187-like
67c2wzvB_
not modelled 7.0 38
PDB header:oxidoreductase
Chain: B: PDB Molecule:nfnb protein;
PDBTitle: crystal structure of the fmn-dependent nitroreductase nfnb2 from mycobacterium smegmatis
68d1yqha1
not modelled 7.0 36
Fold:Ferredoxin-like
Superfamily:MTH1187/YkoF-like
Family:MTH1187-like
69c5oixG_
not modelled 6.9 39
PDB header:viral protein
Chain: G: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 1.6 a
70c4be4A_
not modelled 6.7 31
PDB header:hydrolase
Chain: A: PDB Molecule:sterol esterase;
PDBTitle: closed conformation of o. piceae sterol esterase
71c3nmdB_
not modelled 6.7 39
PDB header:transferase
Chain: B: PDB Molecule:cgmp dependent protein kinase;
PDBTitle: crystal structure of the leucine zipper domain of cgmp dependent2 protein kinase i beta
72d1ukca_
not modelled 6.6 38
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Fungal lipases
73c3a5dM_
not modelled 6.6 19
PDB header:hydrolase
Chain: M: PDB Molecule:v-type atp synthase beta chain;
PDBTitle: inter-subunit interaction and quaternary rearrangement2 defined by the central stalk of prokaryotic v1-atpase
74c2npuA_
not modelled 6.4 38
PDB header:transferase
Chain: A: PDB Molecule:fkbp12-rapamycin complex-associated protein;
PDBTitle: the solution structure of the rapamycin-binding domain of2 mtor (frb)
75c1odrA_
not modelled 6.4 70
PDB header:lipid transport
Chain: A: PDB Molecule:apoa-i peptide;
PDBTitle: peptide of human apoa-i residues 166-185. nmr, 5 structures2 at ph 6.0, 37 degrees celsius and peptide:dpc mole ratio3 of 1:40
76c1odqA_
not modelled 6.4 70
PDB header:lipid transport
Chain: A: PDB Molecule:apoa-i peptide;
PDBTitle: peptide of human apoa-i residues 166-185. nmr, 5 structures2 at ph 3.7, 37 degrees celsius and peptide:sds mole ratio3 of 1:40
77c1odpA_
not modelled 6.4 70
PDB header:lipid transport
Chain: A: PDB Molecule:apoa-i peptide;
PDBTitle: peptide of human apoa-i residues 166-185. nmr, 5 structures2 at ph 6.6, 37 degrees celsius and peptide:sds mole ratio3 of 1:40
78c5vr2A_
not modelled 6.4 31
PDB header:signaling protein
Chain: A: PDB Molecule:myocilin;
PDBTitle: mouse myocilin leucine zipper c-terminal 7 heptad repeat
79d2dk4a1
not modelled 6.2 41
Fold:LEM/SAP HeH motif
Superfamily:PRP4-like
Family:PRP4-like
80c4olkB_
not modelled 6.1 44
PDB header:hydrolase
Chain: B: PDB Molecule:endolysin;
PDBTitle: the chap domain of lysgh15
81c3t6gA_
not modelled 6.1 58
PDB header:signaling protein, cell adhesion
Chain: A: PDB Molecule:sh2 domain-containing protein 3c;
PDBTitle: structure of the complex between nsp3 (shep1) and p130cas
82c2ztbB_
not modelled 6.0 17
PDB header:toxin
Chain: B: PDB Molecule:crystal protein;
PDBTitle: crystal structure of the parasporin-2 bacillus thuringiensis toxin2 that recognizes cancer cells
83d2bcea_
not modelled 6.0 27
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Acetylcholinesterase-like
84c2h0uA_
not modelled 5.9 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadph-flavin oxidoreductase;
PDBTitle: crystal structure of nad(p)h-flavin oxidoreductase from helicobacter2 pylori
85c5co4A_
not modelled 5.9 22
PDB header:transferase
Chain: A: PDB Molecule:putative trna (cytidine(34)-2'-o)-methyltransferase;
PDBTitle: structural insights into the 2-oh methylation of c/u34 on trna
86d1f6wa_
not modelled 5.8 27
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Acetylcholinesterase-like
87c3sqlB_
not modelled 5.7 17
PDB header:hydrolase
Chain: B: PDB Molecule:glycosyl hydrolase family 3;
PDBTitle: crystal structure of glycoside hydrolase from synechococcus
88c4gdoC_
not modelled 5.7 32
PDB header:structural protein
Chain: C: PDB Molecule:plectin;
PDBTitle: structure of a fragment of the rod domain of plectin
89c5w1uA_
not modelled 5.7 23
PDB header:hydrolase
Chain: A: PDB Molecule:carboxylic ester hydrolase;
PDBTitle: culex quinquefasciatus carboxylesterase b2
90d1tr9a_
not modelled 5.6 19
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:NagZ-like
91c3biwD_
not modelled 5.5 31
PDB header:cell adhesion/cell adhesion
Chain: D: PDB Molecule:neuroligin-1;
PDBTitle: crystal structure of the neuroligin-1/neurexin-1beta synaptic adhesion2 complex
92c6n2mA_
not modelled 5.5 26
PDB header:signaling protein
Chain: A: PDB Molecule:caspase recruitment domain-containing protein 9;
PDBTitle: nmr solution structure of the homodimeric, autoinhibited state of the2 card9 card and first coiled-coil
93c3qc1A_
not modelled 5.4 15
PDB header:signaling protein
Chain: A: PDB Molecule:immunoglobulin-binding protein 1;
PDBTitle: protein phosphatase subunit: alpha4
94c5x61A_
not modelled 5.4 31
PDB header:hydrolase
Chain: A: PDB Molecule:acetylcholinesterase;
PDBTitle: crystal structure of acetylcholinesterase catalytic subunit of the2 malaria vector anopheles gambiae, 3.4 a
95c6edjD_
not modelled 5.2 28
PDB header:virus like particle
Chain: D: PDB Molecule:external core antigen;
PDBTitle: cryo-em structure of woodchuck hepatitis virus capsid
96d1crla_
not modelled 5.1 23
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Fungal lipases
97c2hdiB_
not modelled 5.1 41
PDB header:protein transport,antimicrobial protein
Chain: B: PDB Molecule:colicin-ia;
PDBTitle: crystal structure of the colicin i receptor cir from e.coli in complex2 with receptor binding domain of colicin ia.
98d2iboa1
not modelled 5.1 29
Fold:Ferredoxin-like
Superfamily:MTH1187/YkoF-like
Family:MTH1187-like
99d1f5qb2
not modelled 5.1 60
Fold:Cyclin-like
Superfamily:Cyclin-like
Family:Cyclin

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