Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0899_(ompA)_1002815_1003795
DateFri Jul 26 01:50:49 BST 2019
Unique Job ID5b6ca89c57077e7c
SequenceVASKAGLGQT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:43.334 Y:84.685 Z:48.674
Model (left) based on template c2l26A_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:uncharacterized protein rv0899/mt0922;
PDBTitle: rv0899 from mycobacterium tuberculosis contains two separated domains
Confidence and coverage
Confidence:100.0% Coverage: 77%
252 residues ( 77% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2l26A_
100.0 100
PDB header:membrane protein
Chain: A: PDB Molecule:uncharacterized protein rv0899/mt0922;
PDBTitle: rv0899 from mycobacterium tuberculosis contains two separated domains
2c5wtlB_
100.0 38
PDB header:membrane protein
Chain: B: PDB Molecule:ompa family protein;
PDBTitle: crystal structure of the periplasmic portion of outer membrane protein2 a (ompa) from capnocytophaga gingivalis
3c5jirB_
100.0 32
PDB header:unknown function
Chain: B: PDB Molecule:oop family ompa-ompf porin;
PDBTitle: crystal structure of treponema pallidum protein tp0624
4c2kgwA_
100.0 100
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein a;
PDBTitle: solution structure of the carboxy-terminal domain of ompatb, a pore2 forming protein from mycobacterium tuberculosis
5c6aeoA_
100.0 33
PDB header:protein transport
Chain: A: PDB Molecule:maltose/maltodextrin-binding periplasmic protein,tssl;
PDBTitle: tssl periplasmic domain
6c4b5cC_
100.0 28
PDB header:lipid transport
Chain: C: PDB Molecule:putative ompa family lipoprotein;
PDBTitle: crystal structure of the peptidoglycan-associated lipoprotein from2 burkholderia pseudomallei
7d2aizp1
100.0 26
Fold:Bacillus chorismate mutase-like
Superfamily:OmpA-like
Family:OmpA-like
8c4zhwA_
100.0 38
PDB header:signaling protein
Chain: A: PDB Molecule:yfib;
PDBTitle: crystal structure of a bacterial signalling protein (n-terminal2 truncation)
9c4zhvB_
100.0 39
PDB header:signaling protein
Chain: B: PDB Molecule:yfib;
PDBTitle: crystal structure of a bacterial signalling protein
10c3khnB_
100.0 29
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:motb protein, putative;
PDBTitle: crystal structure of putative motb like protein dvu_2228 from2 desulfovibrio vulgaris.
11c6jfwA_
100.0 47
PDB header:membrane protein
Chain: A: PDB Molecule:pa0833-pd protein;
PDBTitle: crystal structure of pa0833 periplasmic domain from pseudomonas2 aeruginosa reveals an unexpected enlarged peptidoglycan binding3 pocket
12c2k1sA_
100.0 48
PDB header:lipoprotein
Chain: A: PDB Molecule:inner membrane lipoprotein yiad;
PDBTitle: solution nmr structure of the folded c-terminal fragment of yiad from2 escherichia coli. northeast structural genomics consortium target3 er553.
13c3s0yA_
100.0 31
PDB header:motor protein
Chain: A: PDB Molecule:motility protein b;
PDBTitle: the crystal structure of the periplasmic domain of motb (residues 64-2 256).
14d2hqsc1
100.0 30
Fold:Bacillus chorismate mutase-like
Superfamily:OmpA-like
Family:OmpA-like
15c4g4xA_
100.0 31
PDB header:peptide binding protein
Chain: A: PDB Molecule:peptidoglycan-associated lipoprotein;
PDBTitle: crystal structure of peptidoglycan-associated lipoprotein from2 acinetobacter baumannii
16c3td4D_
100.0 37
PDB header:membrane protein,peptide binding protein
Chain: D: PDB Molecule:outer membrane protein omp38;
PDBTitle: crystal structure of ompa-like domain from acinetobacter baumannii in2 complex with diaminopimelate
17c5u1hB_
100.0 40
PDB header:peptide binding protein
Chain: B: PDB Molecule:outer membrane porin f;
PDBTitle: crystal structure of the c-terminal peptidoglycan binding domain of2 oprf (pa1777) from pseudomonas aeruginosa
18c5m38A_
100.0 35
PDB header:sugar binding protein
Chain: A: PDB Molecule:ompa family protein;
PDBTitle: structure of the tagl peptidoglycan binding domain from eaec t6ss
19c3cyqM_
100.0 31
PDB header:membrane protein
Chain: M: PDB Molecule:chemotaxis protein motb;
PDBTitle: the crystal structure of the complex of the c-terminal domain of2 helicobacter pylori motb (residues 125-256) with n-acetylmuramic acid
20c4b62A_
100.0 37
PDB header:membrane protein
Chain: A: PDB Molecule:tssl1;
PDBTitle: the structure of the cell wall anchor of the t6ss from pseudomonas2 aeruginosa
21c1r1mA_
not modelled 100.0 38
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein class 4;
PDBTitle: structure of the ompa-like domain of rmpm from neisseria2 meningitidis
22d1r1ma_
not modelled 100.0 38
Fold:Bacillus chorismate mutase-like
Superfamily:OmpA-like
Family:OmpA-like
23c3s0wB_
not modelled 100.0 31
PDB header:motor protein
Chain: B: PDB Molecule:motility protein b;
PDBTitle: the crystal structure of the periplasmic domain of helicobacter pylori2 motb (residues 78-256).
24c4erhB_
not modelled 100.0 34
PDB header:membrane protein
Chain: B: PDB Molecule:outer membrane protein a;
PDBTitle: the crystal structure of ompa domain of ompa from salmonella enterica2 subsp. enterica serovar typhimurium str. 14028s
25c2zvyB_
not modelled 100.0 31
PDB header:membrane protein
Chain: B: PDB Molecule:chemotaxis protein motb;
PDBTitle: structure of the periplasmic domain of motb from salmonella2 (crystal form ii)
26c3wpwB_
not modelled 100.0 33
PDB header:membrane protein
Chain: B: PDB Molecule:pomb;
PDBTitle: structure of pombc5, a periplasmic fragment of pomb from vibrio
27c3ldtA_
not modelled 99.9 30
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein, ompa family protein;
PDBTitle: crystal structure of an outer membrane protein(ompa)from2 legionella pneumophila
28c3oonA_
not modelled 99.9 34
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein (tpn50);
PDBTitle: the structure of an outer membrance protein from borrelia burgdorferi2 b31
29c2zovA_
not modelled 99.9 32
PDB header:membrane protein
Chain: A: PDB Molecule:chemotaxis protein motb;
PDBTitle: structure of the periplasmic domain of motb from salmonella2 (crystal form i)
30c2zf8A_
not modelled 99.8 27
PDB header:structural protein
Chain: A: PDB Molecule:component of sodium-driven polar flagellar motor;
PDBTitle: crystal structure of moty
31c2kgsA_
not modelled 99.6 100
PDB header:membrane protein
Chain: A: PDB Molecule:uncharacterized protein rv0899/mt0922;
PDBTitle: solution structure of the amino-terminal domain of ompatb, a pore2 forming protein from mycobacterium tuberculosis
32c6k2lA_
not modelled 62.4 11
PDB header:flavoprotein
Chain: A: PDB Molecule:siderophore-interacting protein;
PDBTitle: crystal structure of the siderophore-interacting protein sips from2 aeromonas hydrophila
33c2r6hC_
not modelled 62.2 22
PDB header:oxidoreductase
Chain: C: PDB Molecule:nadh:ubiquinone oxidoreductase, na translocating, f
PDBTitle: crystal structure of the domain comprising the nad binding and the fad2 binding regions of the nadh:ubiquinone oxidoreductase, na3 translocating, f subunit from porphyromonas gingivalis
34d1gvha3
not modelled 61.1 27
Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Flavohemoglobin, C-terminal domain
35c3uueA_
not modelled 58.7 28
PDB header:hydrolase
Chain: A: PDB Molecule:lip1, secretory lipase (family 3);
PDBTitle: crystal structure of mono- and diacylglycerol lipase from malassezia2 globosa
36c1gvhA_
not modelled 56.8 27
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavohemoprotein;
PDBTitle: the x-ray structure of ferric escherichia coli2 flavohemoglobin reveals an unespected geometry of the3 distal heme pocket
37c6qppA_
not modelled 54.5 28
PDB header:hydrolase
Chain: A: PDB Molecule:lipase;
PDBTitle: rhizomucor miehei lipase propeptide complex, native
38c4u9uB_
not modelled 51.5 25
PDB header:oxidoreductase
Chain: B: PDB Molecule:na(+)-translocating nadh-quinone reductase subunit f;
PDBTitle: crystal structure of nqrf fad-binding domain from vibrio cholerae
39c5gw8A_
not modelled 47.7 24
PDB header:hydrolase
Chain: A: PDB Molecule:hypothetical secretory lipase (family 3);
PDBTitle: crystal structure of a putative dag-like lipase (mgmdl2) from2 malassezia globosa
40c3g7nA_
not modelled 45.8 20
PDB header:hydrolase
Chain: A: PDB Molecule:lipase;
PDBTitle: crystal structure of a triacylglycerol lipase from penicillium2 expansum at 1.3
41d1tiaa_
not modelled 43.8 20
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Fungal lipases
42c4g1bB_
not modelled 41.6 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:flavohemoglobin;
PDBTitle: x-ray structure of yeast flavohemoglobin in complex with econazole
43c4eh1A_
not modelled 41.5 30
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavohemoprotein;
PDBTitle: crystal structure of the flavohem-like-fad/nad binding domain of2 nitric oxide dioxygenase from vibrio cholerae o1 biovar el tor
44c6gehA_
not modelled 41.2 17
PDB header:metal transport
Chain: A: PDB Molecule:fad-binding 9, siderophore-interacting domain protein;
PDBTitle: structure and reactivity of a siderophore-interacting protein from the2 marine bacterium shewanella reveals unanticipated functional3 versatility.
45d1tiba_
not modelled 40.1 28
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Fungal lipases
46d1cqxa3
not modelled 39.2 20
Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Flavohemoglobin, C-terminal domain
47c6o0aA_
not modelled 36.7 26
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavohemoglobin;
PDBTitle: crystal structure of flavohemoglobin from malassezia yamatoensis with2 bound fad and heme determined by iron sad phasing
48c2gpjA_
not modelled 35.9 13
PDB header:fad-binding protein
Chain: A: PDB Molecule:siderophore-interacting protein;
PDBTitle: crystal structure of a siderophore-interacting protein (sputcn32_0076)2 from shewanella putrefaciens cn-32 at 2.20 a resolution
49d1tvca2
not modelled 34.1 11
Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Aromatic dioxygenase reductase-like
50c1cqxB_
not modelled 33.8 22
PDB header:lipid binding protein
Chain: B: PDB Molecule:flavohemoprotein;
PDBTitle: crystal structure of the flavohemoglobin from alcaligenes eutrophus at2 1.75 a resolution
51c3l7pA_
not modelled 33.7 37
PDB header:transcription
Chain: A: PDB Molecule:putative nitrogen regulatory protein pii;
PDBTitle: crystal structure of smu.1657c, putative nitrogen regulatory protein2 pii from streptococcus mutans
52c3ngmB_
not modelled 30.7 26
PDB header:hydrolase
Chain: B: PDB Molecule:extracellular lipase;
PDBTitle: crystal structure of lipase from gibberella zeae
53c5xk2A_
not modelled 30.4 19
PDB header:hydrolase
Chain: A: PDB Molecule:diacylglycerol lipase;
PDBTitle: crystal structure of mono- and diacylglycerol lipase from aspergillus2 oryzae
54c1tvcA_
not modelled 30.1 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:methane monooxygenase component c;
PDBTitle: fad and nadh binding domain of methane monooxygenase2 reductase from methylococcus capsulatus (bath)
55c4ozlA_
not modelled 28.6 26
PDB header:signaling protein
Chain: A: PDB Molecule:nitrogen regulatory protein p-ii;
PDBTitle: glnk2 from haloferax mediterranei complexed with amp
56c3o0dF_
not modelled 24.4 22
PDB header:hydrolase
Chain: F: PDB Molecule:triacylglycerol lipase;
PDBTitle: crystal structure of lip2 lipase from yarrowia lipolytica at 1.7 a2 resolution
57c5l8xA_
not modelled 23.2 23
PDB header:transferase
Chain: A: PDB Molecule:tetrahydromethanopterin s-methyltransferase subunit a;
PDBTitle: x-ray structure of apo methanocaldococcus jannaschii methyltransferase2 subunit a at 1.85 angstrom
58d1krha2
not modelled 22.7 12
Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Aromatic dioxygenase reductase-like
59d1uzhc1
not modelled 22.7 27
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
60c4p6vF_
not modelled 20.5 25
PDB header:oxidoreductase
Chain: F: PDB Molecule:na(+)-translocating nadh-quinone reductase subunit f;
PDBTitle: crystal structure of the na+-translocating nadh: ubiquinone2 oxidoreductase from vibrio cholerae
61d1svdm1
not modelled 20.2 19
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
62c3ds8A_
not modelled 20.2 10
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin2722 protein;
PDBTitle: the crysatl structure of the gene lin2722 products from listeria2 innocua
63d1rbli_
not modelled 20.2 19
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
64d1qy7a_
not modelled 20.2 24
Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Prokaryotic signal transducing protein
65d1gk8i_
not modelled 18.6 23
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
66d1bwvs_
not modelled 18.2 16
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
67d1ej7s_
not modelled 17.9 26
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
68c3gbsA_
not modelled 17.5 23
PDB header:hydrolase
Chain: A: PDB Molecule:cutinase 1;
PDBTitle: crystal structure of aspergillus oryzae cutinase
69d1uwca_
not modelled 17.5 24
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Fungal lipases
70d1cexa_
not modelled 17.2 31
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Cutinase-like
71d8ruci_
not modelled 17.1 26
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
72d1ir1s_
not modelled 17.1 27
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
73c5o1uB_
not modelled 16.8 21
PDB header:hydrolase
Chain: B: PDB Molecule:phosphodiesterase;
PDBTitle: structure of wildtype t.maritima pde (tm1595) with amp and mn2+
74d1uzdc1
not modelled 16.7 23
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
75c5mz2I_
not modelled 16.5 13
PDB header:photosynthesis
Chain: I: PDB Molecule:rubisco small subunit;
PDBTitle: rubisco from thalassiosira antarctica
76d2v6ai1
not modelled 16.1 23
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
77c6eslB_
not modelled 16.1 9
PDB header:hydrolase
Chain: B: PDB Molecule:bacterial leucyl aminopeptidase;
PDBTitle: crystal structure of the legionella pneumoppila lapa
78d1wdds_
not modelled 15.4 29
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
79c2bgjB_
not modelled 14.9 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:ferredoxin-nadp(h) reductase;
PDBTitle: x-ray structure of the ferredoxin-nadp(h) reductase from rhodobacter2 capsulatus at 2.1 angstroms
80d1qoza_
not modelled 14.9 19
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Cutinase-like
81d2v0ea1
not modelled 14.9 25
Fold:GYF/BRK domain-like
Superfamily:BRK domain-like
Family:BRK domain-like
82d1g66a_
not modelled 14.3 20
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Cutinase-like
83c3mhyC_
not modelled 14.3 18
PDB header:signaling protein
Chain: C: PDB Molecule:pii-like protein pz;
PDBTitle: a new pii protein structure
84c3pe3D_
not modelled 14.3 18
PDB header:transferase
Chain: D: PDB Molecule:udp-n-acetylglucosamine--peptide n-
PDBTitle: structure of human o-glcnac transferase and its complex with a peptide2 substrate
85c3dd5F_
not modelled 14.1 23
PDB header:hydrolase
Chain: F: PDB Molecule:cutinase;
PDBTitle: glomerella cingulata e600-cutinase complex
86c2czqB_
not modelled 14.1 27
PDB header:hydrolase
Chain: B: PDB Molecule:cutinase-like protein;
PDBTitle: a novel cutinase-like protein from cryptococcus sp.
87c2yijA_
not modelled 14.1 28
PDB header:hydrolase
Chain: A: PDB Molecule:phospholipase a1-iigamma;
PDBTitle: crystal structure of phospholipase a1
88c5x88A_
not modelled 14.1 19
PDB header:hydrolase
Chain: A: PDB Molecule:cutinase;
PDBTitle: a crystal structure of cutinases from malbranchea cinnamomea
89c4psdA_
not modelled 14.0 21
PDB header:hydrolase
Chain: A: PDB Molecule:carbohydrate esterase family 5;
PDBTitle: structure of trichoderma reesei cutinase native form.
90d1ul3a_
not modelled 14.0 27
Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Prokaryotic signal transducing protein
91c4f7dA_
not modelled 13.8 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:ferredoxin--nadp reductase;
PDBTitle: crystal structure of ferredoxin-nadp reductase from burkholderia2 thailandensis e264
92d2ckca1
not modelled 13.7 23
Fold:GYF/BRK domain-like
Superfamily:BRK domain-like
Family:BRK domain-like
93c2ckcA_
not modelled 13.7 23
PDB header:hydrolase
Chain: A: PDB Molecule:chromodomain-helicase-dna-binding protein 7;
PDBTitle: solution structures of the brk domains of the human chromo2 helicase domain 7 and 8, reveals structural similarity3 with gyf domain suggesting a role in protein interaction
94c6mr1A_
not modelled 13.6 20
PDB header:protein binding
Chain: A: PDB Molecule:carbon dioxide concentrating mechanism protein;
PDBTitle: rbcs-like subdomain of ccmm
95d1bxni_
not modelled 13.6 9
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
96c6hbbA_
not modelled 12.8 16
PDB header:protein binding
Chain: A: PDB Molecule:carbon dioxide concentrating mechanism protein ccmm;
PDBTitle: crystal structure of the small subunit-like domain 1 of ccmm from2 synechococcus elongatus (strain pcc 7942)
97c3cqyA_
not modelled 12.8 21
PDB header:transferase
Chain: A: PDB Molecule:anhydro-n-acetylmuramic acid kinase;
PDBTitle: crystal structure of a functionally unknown protein (so_1313) from2 shewanella oneidensis mr-1
98c3iteB_
not modelled 12.8 16
PDB header:ligase
Chain: B: PDB Molecule:sidn siderophore synthetase;
PDBTitle: the third adenylation domain of the fungal sidn non-ribosomal peptide2 synthetase
99c2ybvN_
not modelled 12.7 17
PDB header:lyase
Chain: N: PDB Molecule:ribulose bisphosphate carboxylase small subunit;
PDBTitle: structure of rubisco from thermosynechococcus elongatus

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