Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0901_(-)_1003960_1004487
DateFri Jul 26 01:50:49 BST 2019
Unique Job ID5d847966d2ae0702
SequenceMEHVHWWLAG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:25.948 Y:29.574 Z:28.164
Model (left) based on template d1eyfa_
Top template information
Fold:Ada DNA repair protein, N-terminal domain (N-Ada 10)
Superfamily:Ada DNA repair protein, N-terminal domain (N-Ada 10)
Family:Ada DNA repair protein, N-terminal domain (N-Ada 10)
Confidence and coverage
Confidence: 97.7% Coverage: 26%
46 residues ( 26% of your sequence) have been modelled with 97.7% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Warning: 65% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1eyfa_
97.7 17
Fold:Ada DNA repair protein, N-terminal domain (N-Ada 10)
Superfamily:Ada DNA repair protein, N-terminal domain (N-Ada 10)
Family:Ada DNA repair protein, N-terminal domain (N-Ada 10)
2c1zgwA_
95.2 19
PDB header:transcription regulator/dna
Chain: A: PDB Molecule:ada polyprotein;
PDBTitle: nmr structure of e. coli ada protein in complex with dna
3c2kncA_
69.6 19
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
4c2k1aA_
54.1 19
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment
5c5ze4A_
51.0 30
PDB header:lyase
Chain: A: PDB Molecule:dihydroxy-acid dehydratase, chloroplastic;
PDBTitle: the structure of holo- structure of dhad complex with [2fe-2s] cluster
6c5ym0A_
50.3 30
PDB header:lyase
Chain: A: PDB Molecule:dihydroxy-acid dehydratase, chloroplastic;
PDBTitle: the crystal structure of dhad
7c3hfkB_
43.3 25
PDB header:isomerase
Chain: B: PDB Molecule:4-methylmuconolactone methylisomerase;
PDBTitle: crystal structure of 4-methylmuconolactone methylisomerase (h52a) in2 complex with 4-methylmuconolactone
8c3dinE_
42.7 19
PDB header:membrane protein, protein transport
Chain: E: PDB Molecule:preprotein translocase subunit secg;
PDBTitle: crystal structure of the protein-translocation complex formed by the2 secy channel and the seca atpase
9c2l8sA_
36.3 29
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-1;
PDBTitle: solution nmr structure of transmembrane and cytosolic regions of2 integrin alpha1 in detergent micelles
10c1z65A_
31.4 43
PDB header:unknown function
Chain: A: PDB Molecule:prion-like protein doppel;
PDBTitle: mouse doppel 1-30 peptide
11c3dl8F_
27.1 25
PDB header:protein transport
Chain: F: PDB Molecule:protein-export membrane protein secg;
PDBTitle: structure of the complex of aquifex aeolicus secyeg and bacillus2 subtilis seca
12c5j84A_
25.0 14
PDB header:lyase
Chain: A: PDB Molecule:dihydroxy-acid dehydratase;
PDBTitle: crystal structure of l-arabinonate dehydratase in holo-form
13d1d5ra1
24.5 15
Fold:C2 domain-like
Superfamily:C2 domain (Calcium/lipid-binding domain, CaLB)
Family:PLC-like (P variant)
14c2m1jA_
23.9 35
PDB header:unknown function
Chain: A: PDB Molecule:prion-like protein doppel;
PDBTitle: ovine doppel signal peptide (1-30)
15c2k1kA_
22.0 25
PDB header:signaling protein
Chain: A: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3
16c2k1lA_
22.0 25
PDB header:signaling protein
Chain: A: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3
17c2k1kB_
22.0 25
PDB header:signaling protein
Chain: B: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3
18c2k1lB_
22.0 25
PDB header:signaling protein
Chain: B: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3
19c3kdpH_
19.2 38
PDB header:hydrolase
Chain: H: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a;
PDBTitle: crystal structure of the sodium-potassium pump
20c3kdpG_
19.2 38
PDB header:hydrolase
Chain: G: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a;
PDBTitle: crystal structure of the sodium-potassium pump
21c4hqjG_
not modelled 18.4 38
PDB header:hydrolase/transport protein
Chain: G: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a;
PDBTitle: crystal structure of na+,k+-atpase in the na+-bound state
22c4hqjE_
not modelled 17.2 38
PDB header:hydrolase/transport protein
Chain: E: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a;
PDBTitle: crystal structure of na+,k+-atpase in the na+-bound state
23c2akiA_
not modelled 15.6 33
PDB header:protein transport
Chain: A: PDB Molecule:protein-export membrane protein secg;
PDBTitle: normal mode-based flexible fitted coordinates of a translocating2 secyeg protein-conducting channel into the cryo-em map of a secyeg-3 nascent chain-70s ribosome complex from e. coli
24d2pu9b1
not modelled 14.0 32
Fold:SH3-like barrel
Superfamily:Electron transport accessory proteins
Family:Ferredoxin thioredoxin reductase (FTR), alpha (variable) chain
25d1h41a1
not modelled 13.4 36
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:alpha-D-glucuronidase/Hyaluronidase catalytic domain
26d1l8na1
not modelled 13.0 36
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:alpha-D-glucuronidase/Hyaluronidase catalytic domain
27c1mqrA_
not modelled 12.9 36
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-d-glucuronidase;
PDBTitle: the crystal structure of alpha-d-glucuronidase (e386q) from bacillus2 stearothermophilus t-6
28c5oynB_
not modelled 12.9 10
PDB header:lyase
Chain: B: PDB Molecule:dehydratase, ilvd/edd family;
PDBTitle: crystal structure of d-xylonate dehydratase in holo-form
29c1gqkB_
not modelled 12.4 36
PDB header:hydrolase
Chain: B: PDB Molecule:alpha-d-glucuronidase;
PDBTitle: structure of pseudomonas cellulosa alpha-d-glucuronidase complexed2 with glucuronic acid
30c5j8tA_
not modelled 11.7 9
PDB header:hydrolase
Chain: A: PDB Molecule:choline binding protein;
PDBTitle: nmr structure of excalibur domain of cbpl
31c5vcsB_
not modelled 11.3 50
PDB header:transferase
Chain: B: PDB Molecule:alpha-1,6-mannosyl-glycoprotein 2-beta-n-
PDBTitle: alpha-1,6-mannosyl-glycoprotein 2-beta-n-acetylglucosaminyltransferase2 with bound acceptor
32c6fkip_
not modelled 10.4 12
PDB header:membrane protein
Chain: P: PDB Molecule:atp synthase subunit c, chloroplastic;
PDBTitle: chloroplast f1fo conformation 3
33d1tdha3
not modelled 9.9 26
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
34d2msta_
not modelled 9.8 15
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
35c2m4iA_
not modelled 8.2 17
PDB header:cell cycle
Chain: A: PDB Molecule:septum site-determining protein minc;
PDBTitle: solution structure of bacillus subtilis minc n-terminal domain
36d2cqca1
not modelled 8.1 18
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
37c2lcoA_
not modelled 7.5 25
PDB header:membrane protein
Chain: A: PDB Molecule:walp19-p8 peptide;
PDBTitle: 1h and 15n assignments of walp19-p8 peptide in sds micelles
38c5vcmA_
not modelled 7.3 50
PDB header:transferase
Chain: A: PDB Molecule:alpha-1,6-mannosyl-glycoprotein 2-beta-n-
PDBTitle: alpha-1,6-mannosyl-glycoprotein 2-beta-n-acetylglucosaminyltransferase2 with bound udp and manganese
39c2na8A_
not modelled 7.3 28
PDB header:membrane protein
Chain: A: PDB Molecule:cytokine receptor common subunit beta;
PDBTitle: transmembrane structure of the cytokine receptor common subunit beta
40c2na9A_
not modelled 7.2 28
PDB header:signaling protein
Chain: A: PDB Molecule:cytokine receptor common subunit beta;
PDBTitle: transmembrane structure of the p441a mutant of the cytokine receptor2 common subunit beta
41d1nh1a_
not modelled 7.2 36
Fold:Antivirulence factor
Superfamily:Antivirulence factor
Family:Antivirulence factor
42c1nh1A_
not modelled 7.2 36
PDB header:avirulence protein
Chain: A: PDB Molecule:avirulence b protein;
PDBTitle: crystal structure of the type iii effector avrb from2 pseudomonas syringae.
43d1wela1
not modelled 7.1 15
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
44d1fxla2
not modelled 6.9 21
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
45d2ftra1
not modelled 6.8 17
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:EthD-like
46c2mj2A_
not modelled 6.3 40
PDB header:viral protein
Chain: A: PDB Molecule:agnoprotein;
PDBTitle: structure of the dimerization domain of the human polyoma, jc virus2 agnoprotein is an amphipathic alpha-helix.
47d1gcca_
not modelled 6.2 50
Fold:DNA-binding domain
Superfamily:DNA-binding domain
Family:GCC-box binding domain
48d1b7fa2
not modelled 6.1 21
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
49c6bhpA_
not modelled 6.1 24
PDB header:membrane protein
Chain: A: PDB Molecule:membrane protein;
PDBTitle: crystal structure of the chlamydomonas reinhardtii lci1 channel
50c6bhpC_
not modelled 6.1 24
PDB header:membrane protein
Chain: C: PDB Molecule:membrane protein;
PDBTitle: crystal structure of the chlamydomonas reinhardtii lci1 channel
51c2hacA_
not modelled 5.8 38
PDB header:membrane protein
Chain: A: PDB Molecule:t-cell surface glycoprotein cd3 zeta chain;
PDBTitle: structure of zeta-zeta transmembrane dimer
52c2hacB_
not modelled 5.8 38
PDB header:membrane protein
Chain: B: PDB Molecule:t-cell surface glycoprotein cd3 zeta chain;
PDBTitle: structure of zeta-zeta transmembrane dimer
53c3arcl_
not modelled 5.6 29
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution
54c4ardA_
not modelled 5.4 27
PDB header:viral protein
Chain: A: PDB Molecule:capsid protein p27;
PDBTitle: structure of the immature retroviral capsid at 8a resolution by cryo-2 electron microscopy
55c2mdfA_
not modelled 5.2 9
PDB header:proton transport
Chain: A: PDB Molecule:sodium/hydrogen exchanger 1;
PDBTitle: nmr structure of a two-transmembrane segment tm vi-vii of nhe1
56d2cqda1
not modelled 5.2 21
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
57c2lowA_
not modelled 5.2 36
PDB header:membrane protein
Chain: A: PDB Molecule:apelin receptor;
PDBTitle: solution structure of ar55 in 50% hfip
58c6az5A_
not modelled 5.2 28
PDB header:sugar binding protein
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: crystal structure of cbmd (family cbm41) from eubacterium rectale2 amy13k
59d1hd0a_
not modelled 5.2 15
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
60c5knwA_
not modelled 5.1 22
PDB header:rna binding protein
Chain: A: PDB Molecule:la-related protein 7;
PDBTitle: solution nmr structure of human larp7 xrrm2
61c4a5uA_
not modelled 5.1 13
PDB header:transferase/rna binding protein
Chain: A: PDB Molecule:rna replicase polyprotein;
PDBTitle: turnip yellow mosaic virus proteinase and escherichia coli 30s2 ribosomal s15
62c3awfC_
not modelled 5.0 21
PDB header:hydrolase, membrane protein
Chain: C: PDB Molecule:voltage-sensor containing phosphatase;
PDBTitle: crystal structure of pten-like domain of ci-vsp (236-576)
63c2qksA_
not modelled 5.0 17
PDB header:metal transport
Chain: A: PDB Molecule:kir3.1-prokaryotic kir channel chimera;
PDBTitle: crystal structure of a kir3.1-prokaryotic kir channel chimera

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Transmembrane helix prediction 

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