Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0912_(-)_1016240_1016689
DateFri Jul 26 01:50:50 BST 2019
Unique Job ID9bf3c7aee5fe2aeb
SequenceMTRRLRPGWL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:16.545 Y:45.972 Z:28.270
Model (left) based on template c2l9uA_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-3;
PDBTitle: spatial structure of dimeric erbb3 transmembrane domain
Confidence and coverage
Confidence: 20.1% Coverage: 21%
31 residues ( 21% of your sequence) have been modelled with 20.1% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2l9uA_



20.1 32
PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-3;
PDBTitle: spatial structure of dimeric erbb3 transmembrane domain
2c2l9uB_



20.1 32
PDB header:membrane protein
Chain: B: PDB Molecule:receptor tyrosine-protein kinase erbb-3;
PDBTitle: spatial structure of dimeric erbb3 transmembrane domain
3d1vf5c3



20.0 26
Fold:Single transmembrane helix
Superfamily:Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor
Family:Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor
4c4k0qC_



17.8 55
PDB header:ribosome
Chain: C: PDB Molecule:50s ribosomal protein l1;
PDBTitle: crystal structure of thermus thermophilus 70s containing trnas and2 mrna stop codon with pseudouridine
5c2memA_



17.5 42
PDB header:transcription
Chain: A: PDB Molecule:sex comb on midleg-like protein 2;
PDBTitle: solution nmr structure of sled domain of scml2
6c4k0mC_



17.4 55
PDB header:ribosome
Chain: C: PDB Molecule:50s ribosomal protein l1;
PDBTitle: crystal structure of thermus thermophilus 70s containing trnas and2 mrna stop codon with pseudouridine
7c4wwtA_



15.2 55
PDB header:ribosome
Chain: A: PDB Molecule:50s ribosomal protein l1;
PDBTitle: crystal structure of bactobolin a bound to 70s ribosome-trna complex
8c4wweA_



13.1 55
PDB header:ribosome
Chain: A: PDB Molecule:50s ribosomal protein l1;
PDBTitle: crystal structure of bactobolin a bound to 70s ribosome-trna complex
9c2jx5A_



13.0 56
PDB header:ribosomal protein
Chain: A: PDB Molecule:glub(s27a);
PDBTitle: solution structure of the ubiquitin domain n-terminal to2 the s27a ribosomal subunit of giardia lamblia
10c5tszA_



10.9 25
PDB header:cell invasion
Chain: A: PDB Molecule:pv cell-traversal protein;
PDBTitle: crystal structure of plasmodium vivax celtos
11d1q90a3



10.9 16
Fold:Single transmembrane helix
Superfamily:Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor
Family:Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor
12c4ndvB_



10.7 20
PDB header:sugar binding protein
Chain: B: PDB Molecule:alpha-galactosyl-binding lectin;
PDBTitle: crystal structure of l. decastes alpha-galactosyl-binding lectin in2 complex with globotriose
13c2jpkA_



10.4 40
PDB header:antimicrobial protein
Chain: A: PDB Molecule:bacteriocin lactococcin-g subunit beta;
PDBTitle: lactococcin g-b in dpc
14c3a5pD_



10.3 36
PDB header:sugar binding protein
Chain: D: PDB Molecule:haemagglutinin i;
PDBTitle: crystal structure of hemagglutinin
15c1alnA_



10.3 60
PDB header:hydrolase
Chain: A: PDB Molecule:cytidine deaminase;
PDBTitle: crystal structure of cytidine deaminase complexed with 3-deazacytidine
16d1r5ta_



9.9 60
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
17c2jpmA_



9.1 40
PDB header:antimicrobial protein
Chain: A: PDB Molecule:bacteriocin lactococcin-g subunit beta;
PDBTitle: lactococcin g-b in tfe
18c5lnkn_



9.0 35
PDB header:oxidoreductase
Chain: N: PDB Molecule:mitochondrial complex i, nd2 subunit;
PDBTitle: entire ovine respiratory complex i
19c3qoyA_



8.2 64
PDB header:ribosomal protein
Chain: A: PDB Molecule:50s ribosomal protein l1;
PDBTitle: crystal structure of ribosomal protein l1 from aquifex aeolicus
20d1alna2



8.0 60
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
21d1jb0a_



not modelled 7.8 36
Fold:Photosystem I subunits PsaA/PsaB
Superfamily:Photosystem I subunits PsaA/PsaB
Family:Photosystem I subunits PsaA/PsaB
22d1mzpa_



not modelled 7.7 18
Fold:Ribosomal protein L1
Superfamily:Ribosomal protein L1
Family:Ribosomal protein L1
23c3bboD_



not modelled 7.4 36
PDB header:ribosome
Chain: D: PDB Molecule:ribosomal protein l1;
PDBTitle: homology model for the spinach chloroplast 50s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome
24d2j01c1



not modelled 7.4 55
Fold:Ribosomal protein L1
Superfamily:Ribosomal protein L1
Family:Ribosomal protein L1
25d1mq0a_



not modelled 7.2 60
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
26c4eg2G_



not modelled 7.1 60
PDB header:hydrolase
Chain: G: PDB Molecule:cytidine deaminase;
PDBTitle: 2.2 angstrom crystal structure of cytidine deaminase from vibrio2 cholerae in complex with zinc and uridine
27d1ad2a_



not modelled 6.7 55
Fold:Ribosomal protein L1
Superfamily:Ribosomal protein L1
Family:Ribosomal protein L1
28c5dm70_



not modelled 6.5 55
PDB header:ribosome
Chain: 0: PDB Molecule:50s ribosomal protein l1;
PDBTitle: crystal structure of the 50s ribosomal subunit from deinococcus2 radiodurans in complex with hygromycin a
29c1s6cB_



not modelled 6.1 20
PDB header:transport protein
Chain: B: PDB Molecule:potassium voltage-gated channel subfamily d member 2;
PDBTitle: crystal structure of the complex between kchip1 and kv4.2 n1-30
30c2gyc2_



not modelled 6.0 55
PDB header:ribosome
Chain: 2: PDB Molecule:50s ribosomal protein l1;
PDBTitle: structure of the 50s subunit of a secm-stalled e. coli ribosome2 complex obtained by fitting atomic models for rna and protein3 components into cryo-em map emd-1143
31c1mqsB_



not modelled 5.9 38
PDB header:endocytosis/exocytosis
Chain: B: PDB Molecule:integral membrane protein sed5;
PDBTitle: crystal structure of sly1p in complex with an n-terminal peptide of2 sed5p
32d2fr5a1



not modelled 5.9 60
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
33d1uwza_



not modelled 5.6 40
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
34d1lgha_



not modelled 5.5 60
Fold:Light-harvesting complex subunits
Superfamily:Light-harvesting complex subunits
Family:Light-harvesting complex subunits
35c2zkr5_



not modelled 5.2 45
PDB header:ribosomal protein/rna
Chain: 5: PDB Molecule:60s ribosomal protein l10a;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
36c4gyxA_



not modelled 5.1 100
PDB header:structural protein, blood clotting
Chain: A: PDB Molecule:type iii collagen fragment in a host peptide stabilized by
PDBTitle: the von willebrand factor a3 domain binding region of type iii2 collagen stabilized by the cysteine knot
37c4gyxB_



not modelled 5.1 100
PDB header:structural protein, blood clotting
Chain: B: PDB Molecule:type iii collagen fragment in a host peptide stabilized by
PDBTitle: the von willebrand factor a3 domain binding region of type iii2 collagen stabilized by the cysteine knot
38c6et5u_



not modelled 5.1 22
PDB header:photosynthesis
Chain: U: PDB Molecule:light-harvesting protein b-1015 gamma chain;
PDBTitle: reaction centre light harvesting complex 1 from blc. virids

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below