Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0913c_(-)_1017221_1018729
DateFri Jul 26 01:50:50 BST 2019
Unique Job IDeae2b1cd7168ceff
SequenceMDITIVGKYL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:57.382 Y:63.178 Z:61.440
Model (left) based on template c5j54A_
Top template information
PDB header:oxidoreductase
Chain: A: PDB Molecule:carotenoid oxygenase;
PDBTitle: the structure and mechanism of nov1, a resveratrol-cleaving2 dioxygenase
Confidence and coverage
Confidence:100.0% Coverage: 92%
461 residues ( 92% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5j54A_



100.0 27
PDB header:oxidoreductase
Chain: A: PDB Molecule:carotenoid oxygenase;
PDBTitle: the structure and mechanism of nov1, a resveratrol-cleaving2 dioxygenase
2c5v2dA_



100.0 28
PDB header:oxidoreductase
Chain: A: PDB Molecule:dioxygenase;
PDBTitle: crystal structure of pseudomonas brassicacearum lignostilbene2 dioxygenase
3c5u90A_



100.0 26
PDB header:oxidoreductase
Chain: A: PDB Molecule:carotenoid oxygenase 1;
PDBTitle: crystal structure of co-cao1 in complex with resveratrol
4c3npeA_



100.0 28
PDB header:oxidoreductase
Chain: A: PDB Molecule:9-cis-epoxycarotenoid dioxygenase 1, chloroplastic;
PDBTitle: structure of vp14 in complex with oxygen
5c2biwC_



100.0 25
PDB header:oxidoreductase
Chain: C: PDB Molecule:apocarotenoid-cleaving oxygenase;
PDBTitle: crystal structure of apocarotenoid cleavage oxygenase from2 synechocystis, native enzyme
6c3fsnA_



100.0 18
PDB header:isomerase
Chain: A: PDB Molecule:retinal pigment epithelium-specific 65 kda protein;
PDBTitle: crystal structure of rpe65 at 2.14 angstrom resolution
7c6rteB_



83.4 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:cytochrome c;
PDBTitle: dihydro-heme d1 dehydrogenase nirn in complex with dhe
8c4cvcA_



77.4 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:alcohol dehydrogenase;
PDBTitle: crystal structure of quinone-dependent alcohol dehydrogenase from2 pseudogluconobacter saccharoketogenenes with zinc in the active site
9c1nnoA_



57.4 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitrite reductase;
PDBTitle: conformational changes occurring upon no binding in nitrite reductase2 from pseudomonas aeruginosa
10d1mdah_



39.4 11
Fold:7-bladed beta-propeller
Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase
Family:Methylamine dehydrogenase, H-chain
11c5dilA_



31.2 32
PDB header:rna-binding protein, viral protein
Chain: A: PDB Molecule:non-structural protein 1;
PDBTitle: crystal structure of the effector domain of the ns1 protein from2 influenza virus b
12d2hu7a1



26.9 15
Fold:7-bladed beta-propeller
Superfamily:Peptidase/esterase 'gauge' domain
Family:Acylamino-acid-releasing enzyme, N-terminal donain
13c3qc2A_



26.4 28
PDB header:hydrolase
Chain: A: PDB Molecule:glycosyl hydrolase;
PDBTitle: crystal structure of a glycosyl hydrolase (bacova_03624) from2 bacteroides ovatus at 2.30 a resolution
14c5aycA_



25.2 21
PDB header:transferase
Chain: A: PDB Molecule:4-o-beta-d-mannosyl-d-glucose phosphorylase;
PDBTitle: crystal structure of ruminococcus albus 4-o-beta-d-mannosyl-d-glucose2 phosphorylase (ramp1) in complexes with sulfate and 4-o-beta-d-3 mannosyl-d-glucose
15c5f30B_



21.4 18
PDB header:oxidoreductase
Chain: B: PDB Molecule:thiocyanate dehydrogenase;
PDBTitle: thiocyanate dehydrogenase from thioalkalivibrio paradoxus
16d1zaka2



21.4 32
Fold:Rubredoxin-like
Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain
Family:Microbial and mitochondrial ADK, insert "zinc finger" domain
17c5c2wD_



21.2 13
PDB header:oxidoreductase
Chain: D: PDB Molecule:hydrazine synthase alpha subunit;
PDBTitle: kuenenia stuttgartiensis hydrazine synthase pressurized with 20 bar2 xenon
18c3watA_



17.2 17
PDB header:transferase
Chain: A: PDB Molecule:4-o-beta-d-mannosyl-d-glucose phosphorylase;
PDBTitle: crystal structure of 4-o-beta-d-mannosyl-d-glucose phosphorylase mgp2 complexed with man+glc
19c3metB_



15.8 18
PDB header:transcription
Chain: B: PDB Molecule:saga-associated factor 29 homolog;
PDBTitle: crystal structure of sgf29 in complex with h3k4me2
20c3elqA_



14.5 11
PDB header:transferase
Chain: A: PDB Molecule:arylsulfate sulfotransferase;
PDBTitle: crystal structure of a bacterial arylsulfate2 sulfotransferase
21d1jmxb_



not modelled 14.4 18
Fold:7-bladed beta-propeller
Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase
Family:Quinohemoprotein amine dehydrogenase B chain
22c4ozuA_



not modelled 12.8 14
PDB header:structural protein
Chain: A: PDB Molecule:coronin;
PDBTitle: crystal structure of wd40 domain from toxoplasma gondii coronin
23c6cmkB_



not modelled 12.8 17
PDB header:metal binding protein
Chain: B: PDB Molecule:aztd protein;
PDBTitle: crystal structure of citrobacter koseri aztd
24d1m7ja2



not modelled 12.6 35
Fold:Composite domain of metallo-dependent hydrolases
Superfamily:Composite domain of metallo-dependent hydrolases
Family:D-aminoacylase
25c2vb6A_



not modelled 12.0 20
PDB header:motor protein
Chain: A: PDB Molecule:myosin vi;
PDBTitle: myosin vi (md-insert2-cam, delta insert1) post-rigor state (2 crystal form 2)
26d1mspa_



not modelled 11.5 36
Fold:Immunoglobulin-like beta-sandwich
Superfamily:PapD-like
Family:MSP-like
27c1gq1B_



not modelled 11.5 12
PDB header:oxidoreductase
Chain: B: PDB Molecule:cytochrome cd1 nitrite reductase;
PDBTitle: cytochrome cd1 nitrite reductase, y25s mutant, oxidised form
28c3knuD_



not modelled 11.3 25
PDB header:transferase
Chain: D: PDB Molecule:trna (guanine-n(1)-)-methyltransferase;
PDBTitle: crystal structure of trna (guanine-n1)-methyltransferase from2 anaplasma phagocytophilum
29c5i5iA_



not modelled 11.2 8
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitrous-oxide reductase;
PDBTitle: shewanella denitrificans nitrous oxide reductase, app form
30d1jofa_



not modelled 11.2 8
Fold:7-bladed beta-propeller
Superfamily:3-carboxy-cis,cis-mucoante lactonizing enzyme
Family:3-carboxy-cis,cis-mucoante lactonizing enzyme
31c1kv9A_



not modelled 10.8 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:type ii quinohemoprotein alcohol dehydrogenase;
PDBTitle: structure at 1.9 a resolution of a quinohemoprotein alcohol2 dehydrogenase from pseudomonas putida hk5
32d1k91a_



not modelled 10.5 13
Fold:P-domain of calnexin/calreticulin
Superfamily:P-domain of calnexin/calreticulin
Family:P-domain of calnexin/calreticulin
33c5c2mA_



not modelled 10.2 35
PDB header:structural protein
Chain: A: PDB Molecule:predicted protein;
PDBTitle: the de novo evolutionary emergence of a symmetrical protein is shaped2 by folding constraints
34d2oz4a1



not modelled 9.7 27
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C2 set domains
35c5uqdA_



not modelled 9.4 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:dumpy: shorter than wild-type;
PDBTitle: dpy-21 in complex with fe(ii) and alpha-ketoglutarate
36d2cu6a1



not modelled 8.6 24
Fold:Alpha-lytic protease prodomain-like
Superfamily:Fe-S cluster assembly (FSCA) domain-like
Family:PaaD-like
37d2noha2



not modelled 7.8 8
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:DNA repair glycosylase, N-terminal domain
38c2bkiA_



not modelled 7.7 20
PDB header:motor protein/metal-binding protein
Chain: A: PDB Molecule:unconventional myosin;
PDBTitle: myosin vi nucleotide-free (mdinsert2-iq) crystal structure
39c6cslA_



not modelled 7.6 25
PDB header:metal binding protein
Chain: A: PDB Molecule:histidine triad protein d;
PDBTitle: pneumococcal phtd protein 269-339 fragment with bound zn(ii)
40c1bb9A_



not modelled 7.6 18
PDB header:transferase
Chain: A: PDB Molecule:amphiphysin 2;
PDBTitle: crystal structure of the sh3 domain from rat amphiphysin 2
41d1bb9a_



not modelled 7.6 18
Fold:SH3-like barrel
Superfamily:SH3-domain
Family:SH3-domain
42c3e7hA_



not modelled 7.4 53
PDB header:transferase
Chain: A: PDB Molecule:dna-directed rna polymerase subunit beta;
PDBTitle: the crystal structure of the beta subunit of the dna-directed rna2 polymerase from vibrio cholerae o1 biovar eltor
43c1mv3A_



not modelled 7.2 16
PDB header:endocytosis/exocytosis
Chain: A: PDB Molecule:myc box dependent interacting protein 1;
PDBTitle: nmr structure of the tumor suppressor bin1: alternative2 splicing in melanoma and interaction with c-myc
44d2fe0a1



not modelled 7.2 12
Fold:Smp-1-like
Superfamily:Smp-1-like
Family:Smp-1-like
45d1xpna_



not modelled 7.1 12
Fold:Prealbumin-like
Superfamily:Hypothetical protein PA1324
Family:Hypothetical protein PA1324
46d1njha_



not modelled 7.1 26
Fold:Hypothetical protein YojF
Superfamily:Hypothetical protein YojF
Family:Hypothetical protein YojF
47c6cfwI_



not modelled 7.0 15
PDB header:membrane protein
Chain: I: PDB Molecule:mbh subunit;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase
48c2fu4B_



not modelled 6.9 27
PDB header:dna binding protein
Chain: B: PDB Molecule:ferric uptake regulation protein;
PDBTitle: crystal structure of the dna binding domain of e.coli fur (ferric2 uptake regulator)
49c5oxzB_



not modelled 6.8 22
PDB header:splicing
Chain: B: PDB Molecule:neq528;
PDBTitle: crystal structure of neqn/neqc complex from nanoarcheaum equitans at2 1.2a
50c4c95C_



not modelled 6.8 11
PDB header:dna replication
Chain: C: PDB Molecule:dna polymerase alpha-binding protein;
PDBTitle: crystal structure of the carboxy-terminal domain of yeast2 ctf4 bound to sld5
51c2bkhA_



not modelled 6.7 20
PDB header:motor protein/metal-binding protein
Chain: A: PDB Molecule:unconventional myosin;
PDBTitle: myosin vi nucleotide-free (mdinsert2) crystal structure
52c6g72A_



not modelled 6.5 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh-ubiquinone oxidoreductase chain 3;
PDBTitle: mouse mitochondrial complex i in the deactive state
53d2cs7a1



not modelled 6.5 25
Fold:IL8-like
Superfamily:PhtA domain-like
Family:PhtA domain-like
54c2ghsA_



not modelled 6.4 13
PDB header:calcium-binding protein
Chain: A: PDB Molecule:agr_c_1268p;
PDBTitle: crystal structure of a calcium-binding protein, regucalcin2 (agr_c_1268) from agrobacterium tumefaciens str. c58 at 1.55 a3 resolution
55d2ghsa1



not modelled 6.4 13
Fold:6-bladed beta-propeller
Superfamily:Calcium-dependent phosphotriesterase
Family:SGL-like
56c5tbyA_



not modelled 6.3 3
PDB header:contractile protein
Chain: A: PDB Molecule:myosin-7;
PDBTitle: human beta cardiac heavy meromyosin interacting-heads motif obtained2 by homology modeling (using swiss-model) of human sequence from3 aphonopelma homology model (pdb-3jbh), rigidly fitted to human beta-4 cardiac negatively stained thick filament 3d-reconstruction (emd-5 2240)
57d1bf2a1



not modelled 6.2 10
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
58c4fc9B_



not modelled 6.0 25
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: structure of the c-terminal domain of the type iii effector xcv32202 (xopl)
59c3q54A_



not modelled 6.0 16
PDB header:lipid binding protein
Chain: A: PDB Molecule:outer membrane assembly lipoprotein yfgl;
PDBTitle: crystal structure of escherichia coli bamb
60d1xv2a_



not modelled 5.9 19
Fold:AF0104/ALDC/Ptd012-like
Superfamily:AF0104/ALDC/Ptd012-like
Family:Alpha-acetolactate decarboxylase-like
61c4wndB_



not modelled 5.9 13
PDB header:signaling protein/protein binding
Chain: B: PDB Molecule:ferm and pdz domain-containing protein 4;
PDBTitle: crystal structure of the tpr domain of lgn in complex with2 frmpd4/preso1 at 1.5 angstrom resolution
62c5v1dA_



not modelled 5.9 14
PDB header:transferase/substrate
Chain: A: PDB Molecule:eif2ak3 protein;
PDBTitle: complex structure of the bovine perk luminal domain and its substrate2 peptide
63c1yr2A_



not modelled 5.8 11
PDB header:hydrolase
Chain: A: PDB Molecule:prolyl oligopeptidase;
PDBTitle: structural and mechanistic analysis of two prolyl endopeptidases: role2 of inter-domain dynamics in catalysis and specificity
64c4c8hC_



not modelled 5.8 12
PDB header:dna replication
Chain: C: PDB Molecule:ctf4;
PDBTitle: crystal structure of the c-terminal region of yeast ctf4,2 selenomethionine protein.
65c5yhoA_



not modelled 5.7 28
PDB header:metal binding protein
Chain: A: PDB Molecule:alpha-acetolactate decarboxylase;
PDBTitle: crystal structure of acetolactate decarboxylase from enterobacter2 cloacae
66c4wneB_



not modelled 5.7 13
PDB header:signaling protein/protein binding
Chain: B: PDB Molecule:peptide from ferm and pdz domain-containing protein 4;
PDBTitle: crystal structure of the tpr domain of lgn in complex with2 frmpd4/preso1 at 2.0 angstrom resolution
67c3mbrX_



not modelled 5.6 13
PDB header:transferase
Chain: X: PDB Molecule:glutamine cyclotransferase;
PDBTitle: crystal structure of the glutaminyl cyclase from xanthomonas2 campestris
68d1lmia_



not modelled 5.4 17
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Antigen MPT63/MPB63 (immunoprotective extracellular protein)
Family:Antigen MPT63/MPB63 (immunoprotective extracellular protein)
69c3grdA_



not modelled 5.4 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized ntf2-superfamily protein;
PDBTitle: crystal structure of ntf2-superfamily protein with unknown function2 (np_977240.1) from bacillus cereus atcc 10987 at 1.25 a resolution
70c4mveB_



not modelled 5.3 16
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of tcur_1030 protein from thermomonospora curvata
71c5gvbA_



not modelled 5.2 10
PDB header:replication, peptide binding protein
Chain: A: PDB Molecule:wd repeat and hmg-box dna-binding protein 1;
PDBTitle: sepb domain of human and-1
72c3mjjD_



not modelled 5.2 16
PDB header:hydrolase
Chain: D: PDB Molecule:predicted acetamidase/formamidase;
PDBTitle: crystal structure analysis of a recombinant predicted2 acetamidase/formamidase from the thermophile thermoanaerobacter3 tengcongensis
73d1kv9a2



not modelled 5.2 9
Fold:8-bladed beta-propeller
Superfamily:Quinoprotein alcohol dehydrogenase-like
Family:Quinoprotein alcohol dehydrogenase-like
74c2kyyA_



not modelled 5.1 20
PDB header:hydrolase
Chain: A: PDB Molecule:possible atp-dependent dna helicase recg-related protein;
PDBTitle: solution nmr structure of the n-terminal domain of putative atp-2 dependent dna helicase recg-related protein from nitrosomonas3 europaea, northeast structural genomics consortium target ner70a
75c6dk4A_



not modelled 5.1 15
PDB header:metal transport
Chain: A: PDB Molecule:ferric uptake regulation protein;
PDBTitle: crystal structure of campylobacter jejuni peroxide stress regulator
76d1dq3a4



not modelled 5.0 18
Fold:Homing endonuclease-like
Superfamily:Homing endonucleases
Family:Intein endonuclease
77c5nsaA_



not modelled 5.0 30
PDB header:transport protein
Chain: A: PDB Molecule:transcobalamin-2;
PDBTitle: beta domain of human transcobalamin bound to co-beta-[2-(2,4-2 difluorophenyl)ethinyl]cobalamin

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite