Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0917_(betP)_1022091_1023872
DateFri Jul 26 01:50:51 BST 2019
Unique Job ID239d7fb2851e7bcb
SequenceMSAKERGDQN ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:77.323 Y:67.436 Z:65.577
Model (left) based on template c2w8aC_
Top template information
PDB header:membrane protein
Chain: C: PDB Molecule:glycine betaine transporter betp;
PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate
Confidence and coverage
Confidence:100.0% Coverage: 85%
506 residues ( 85% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2w8aC_



100.0 41
PDB header:membrane protein
Chain: C: PDB Molecule:glycine betaine transporter betp;
PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate
2c3hfxA_



100.0 26
PDB header:transport protein
Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter;
PDBTitle: crystal structure of carnitine transporter
3c4ainB_



100.0 41
PDB header:membrane protein
Chain: B: PDB Molecule:glycine betaine transporter betp;
PDBTitle: crystal structure of betp with asymmetric protomers.
4c5nvaA_



99.3 13
PDB header:membrane protein
Chain: A: PDB Molecule:putative sodium:solute symporter;
PDBTitle: substrate-bound outward-open state of a na+-coupled sialic acid2 symporter reveals a novel na+-site
5c2xq2A_



97.9 12
PDB header:transport protein
Chain: A: PDB Molecule:sodium/glucose cotransporter;
PDBTitle: structure of the k294a mutant of vsglt
6c5i6xA_



97.6 12
PDB header:membrane protein
Chain: A: PDB Molecule:sodium-dependent serotonin transporter;
PDBTitle: x-ray structure of the ts3 human serotonin transporter complexed with2 paroxetine at the central site
7c4m48A_



97.6 12
PDB header:transport protein
Chain: A: PDB Molecule:transporter;
PDBTitle: x-ray structure of dopamine transporter elucidates antidepressant2 mechanism
8d2a65a1



97.4 13
Fold:SNF-like
Superfamily:SNF-like
Family:SNF-like
9c4us3A_



97.2 15
PDB header:transport protein
Chain: A: PDB Molecule:transporter;
PDBTitle: crystal structure of the bacterial nss member mhst in an2 occluded inward-facing state
10c5oqtA_



97.2 14
PDB header:transport protein
Chain: A: PDB Molecule:amino acid transporter;
PDBTitle: crystal structure of a bacterial cationic amino acid transporter (cat)2 homologue
11c3dh4A_



97.1 9
PDB header:transport protein
Chain: A: PDB Molecule:sodium/glucose cotransporter;
PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus
12c2jlnA_



96.9 10
PDB header:membrane protein
Chain: A: PDB Molecule:mhp1;
PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter
13c3giaA_



96.2 12
PDB header:transport protein
Chain: A: PDB Molecule:uncharacterized protein mj0609;
PDBTitle: crystal structure of apct transporter
14c4djiA_



95.9 14
PDB header:transport protein
Chain: A: PDB Molecule:probable glutamate/gamma-aminobutyrate antiporter;
PDBTitle: structure of glutamate-gaba antiporter gadc
15c6irtB_



95.5 12
PDB header:membrane protein
Chain: B: PDB Molecule:large neutral amino acids transporter small subunit 1;
PDBTitle: human lat1-4f2hc complex bound with bch
16c6f2wA_



92.6 14
PDB header:transport protein
Chain: A: PDB Molecule:putative amino acid/polyamine transport protein;
PDBTitle: bacterial asc transporter crystal structure in open to in conformation
17c3lrcC_



91.9 12
PDB header:transport protein
Chain: C: PDB Molecule:arginine/agmatine antiporter;
PDBTitle: structure of e. coli adic (p1)
18c4wgvC_



68.2 12
PDB header:transport protein
Chain: C: PDB Molecule:divalent metal cation transporter mnth;
PDBTitle: crystal structure of staphylococcus capitis divalent metal ion2 transporter (dmt) in complex with nanobody
19c4wgwA_



68.2 12
PDB header:transport protein
Chain: A: PDB Molecule:divalent metal cation transporter mnth;
PDBTitle: staphylococcus capitis divalent metal ion transporter (dmt) in complex2 with manganese
20c6bm8A_



40.7 14
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein b;
PDBTitle: crystal structure of glycoprotein b from herpes simplex virus type i
21c5xmjG_



not modelled 33.6 13
PDB header:electron transport
Chain: G: PDB Molecule:fumarate reductase respiratory complex;
PDBTitle: crystal structure of quinol:fumarate reductase from desulfovibrio2 gigas
22c5m87A_



not modelled 26.8 14
PDB header:transport protein
Chain: A: PDB Molecule:divalent metal cation transporter mnth;
PDBTitle: crystal structure of eremococcus coleocola manganese transporter
23c3gztF_



not modelled 24.1 40
PDB header:virus
Chain: F: PDB Molecule:outer capsid glycoprotein vp7;
PDBTitle: vp7 recoated rotavirus dlp
24c2kvlA_



not modelled 22.8 40
PDB header:viral protein
Chain: A: PDB Molecule:major outer capsid protein vp7;
PDBTitle: nmr structure of the c-terminal domain of vp7
25c1f59C_



not modelled 18.7 67
PDB header:transport protein receptor
Chain: C: PDB Molecule:fxfg nucleoporin repeats;
PDBTitle: importin-beta-fxfg nucleoporin complex
26c3s2xB_



not modelled 17.8 13
PDB header:transferase
Chain: B: PDB Molecule:acetyl-coa synthase subunit alpha;
PDBTitle: structure of acetyl-coenzyme a synthase alpha subunit c-terminal2 domain
27c6jmqA_



not modelled 16.1 13
PDB header:membrane protein/immune system
Chain: A: PDB Molecule:large neutral amino acids transporter small subunit 1;
PDBTitle: lat1-cd98hc complex bound to mem-108 fab
28c4p6vB_



not modelled 16.0 11
PDB header:oxidoreductase
Chain: B: PDB Molecule:na(+)-translocating nadh-quinone reductase subunit b;
PDBTitle: crystal structure of the na+-translocating nadh: ubiquinone2 oxidoreductase from vibrio cholerae
29c4iu9A_



not modelled 15.5 10
PDB header:transport protein
Chain: A: PDB Molecule:nitrite extrusion protein 2;
PDBTitle: crystal structure of a membrane transporter
30c1x59A_



not modelled 14.4 40
PDB header:protein binding
Chain: A: PDB Molecule:histidyl-trna synthetase;
PDBTitle: solution structures of the whep-trs domain of human2 histidyl-trna synthetase
31c3jcuM_



not modelled 14.2 41
PDB header:membrane protein
Chain: M: PDB Molecule:photosystem ii reaction center protein m;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
32c3jcum_



not modelled 14.2 41
PDB header:membrane protein
Chain: M: PDB Molecule:photosystem ii reaction center protein m;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
33c1xb4C_



not modelled 13.9 14
PDB header:unknown function
Chain: C: PDB Molecule:hypothetical 23.6 kda protein in yuh1-ura8 intergenic
PDBTitle: crystal structure of subunit vps25 of the endosomal trafficking2 complex escrt-ii
34c2qksA_



not modelled 12.8 15
PDB header:metal transport
Chain: A: PDB Molecule:kir3.1-prokaryotic kir channel chimera;
PDBTitle: crystal structure of a kir3.1-prokaryotic kir channel chimera
35d2f2ha1



not modelled 12.3 33
Fold:Putative glucosidase YicI, C-terminal domain
Superfamily:Putative glucosidase YicI, C-terminal domain
Family:Putative glucosidase YicI, C-terminal domain
36c1zzaA_



not modelled 12.3 25
PDB header:membrane protein
Chain: A: PDB Molecule:stannin;
PDBTitle: solution nmr structure of the membrane protein stannin
37c6c08F_



not modelled 11.5 13
PDB header:membrane protein
Chain: F: PDB Molecule:sodium-coupled neutral amino acid transporter 9;
PDBTitle: zebrafish slc38a9 with arginine bound in the cytosol open state
38c5azcA_



not modelled 10.3 18
PDB header:transferase
Chain: A: PDB Molecule:prolipoprotein diacylglyceryl transferase;
PDBTitle: crystal structure of escherichia coli lgt in complex with2 phosphatidylglycerol
39c6hwhB_



not modelled 10.0 15
PDB header:electron transport
Chain: B: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
40c5xnlM_



not modelled 9.2 41
PDB header:membrane protein
Chain: M: PDB Molecule:photosystem ii reaction center protein m;
PDBTitle: structure of stacked c2s2m2-type psii-lhcii supercomplex from pisum2 sativum
41c5xnmM_



not modelled 9.2 41
PDB header:membrane protein
Chain: M: PDB Molecule:photosystem ii reaction center protein m;
PDBTitle: structure of unstacked c2s2m2-type psii-lhcii supercomplex from pisum2 sativum
42c5xnlm_



not modelled 9.2 41
PDB header:membrane protein
Chain: M: PDB Molecule:photosystem ii reaction center protein m;
PDBTitle: structure of stacked c2s2m2-type psii-lhcii supercomplex from pisum2 sativum
43c5xnmm_



not modelled 9.2 41
PDB header:membrane protein
Chain: M: PDB Molecule:photosystem ii reaction center protein m;
PDBTitle: structure of unstacked c2s2m2-type psii-lhcii supercomplex from pisum2 sativum
44c3syaA_



not modelled 8.3 30
PDB header:metal transport
Chain: A: PDB Molecule:g protein-activated inward rectifier potassium channel 2;
PDBTitle: crystal structure of the g protein-gated inward rectifier k+ channel2 girk2 (kir3.2) in complex with sodium and pip2
45c3s0xB_



not modelled 8.1 17
PDB header:hydrolase
Chain: B: PDB Molecule:peptidase a24b, flak domain protein;
PDBTitle: the crystal structure of gxgd membrane protease flak
46c2lcoA_



not modelled 8.0 40
PDB header:membrane protein
Chain: A: PDB Molecule:walp19-p8 peptide;
PDBTitle: 1h and 15n assignments of walp19-p8 peptide in sds micelles
47c3j2wH_



not modelled 7.3 24
PDB header:virus
Chain: H: PDB Molecule:glycoprotein e1;
PDBTitle: electron cryo-microscopy of chikungunya virus
48c3j2wE_



not modelled 7.3 24
PDB header:virus
Chain: E: PDB Molecule:glycoprotein e1;
PDBTitle: electron cryo-microscopy of chikungunya virus
49c5mdxm_



not modelled 7.3 44
PDB header:photosynthesis
Chain: M: PDB Molecule:photosystem ii reaction center protein m;
PDBTitle: cryo-em structure of the psii supercomplex from arabidopsis thaliana
50c5mdxM_



not modelled 7.3 44
PDB header:photosynthesis
Chain: M: PDB Molecule:photosystem ii reaction center protein m;
PDBTitle: cryo-em structure of the psii supercomplex from arabidopsis thaliana
51c2qwuB_



not modelled 6.9 25
PDB header:cell invasion
Chain: B: PDB Molecule:intracellular growth locus, subunit c;
PDBTitle: crystal structure of f. tularensis pathogenicity island protein c
52d1m56d_



not modelled 6.8 17
Fold:Single transmembrane helix
Superfamily:Bacterial aa3 type cytochrome c oxidase subunit IV
Family:Bacterial aa3 type cytochrome c oxidase subunit IV
53c3qf4B_



not modelled 6.8 11
PDB header:transport protein
Chain: B: PDB Molecule:uncharacterized abc transporter atp-binding protein
PDBTitle: crystal structure of a heterodimeric abc transporter in its inward-2 facing conformation
54d2nwwa1



not modelled 6.6 12
Fold:Proton glutamate symport protein
Superfamily:Proton glutamate symport protein
Family:Proton glutamate symport protein
55c5gasN_



not modelled 6.5 11
PDB header:hydrolase
Chain: N: PDB Molecule:archaeal/vacuolar-type h+-atpase subunit i;
PDBTitle: thermus thermophilus v/a-atpase, conformation 2
56c3f1iH_



not modelled 6.5 50
PDB header:protein binding
Chain: H: PDB Molecule:hepatocyte growth factor-regulated tyrosine kinase
PDBTitle: human escrt-0 core complex
57c5hdjA_



not modelled 6.4 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:nfra1;
PDBTitle: structure of b. megaterium nfra1
58c3l09B_



not modelled 6.1 17
PDB header:transcription regulator
Chain: B: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of putative transcriptional regulator2 (jann_22dec04_contig27_revised_gene3569) from jannaschia sp. ccs1 at3 2.81 a resolution
59c6djyC_



not modelled 5.9 13
PDB header:virus
Chain: C: PDB Molecule:major capsid protein;
PDBTitle: fako virus
60c3pcqX_



not modelled 5.9 38
PDB header:photosynthesis
Chain: X: PDB Molecule:photosystem i 4.8k protein;
PDBTitle: femtosecond x-ray protein nanocrystallography
61c4iu8A_



not modelled 5.9 10
PDB header:transport protein
Chain: A: PDB Molecule:nitrite extrusion protein 2;
PDBTitle: crystal structure of a membrane transporter (selenomethionine2 derivative)
62d2axtm1



not modelled 5.8 46
Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein M, PsbM
Family:PsbM-like
63c5kpeA_



not modelled 5.8 15
PDB header:de novo protein
Chain: A: PDB Molecule:de novo beta sheet design protein or664;
PDBTitle: solution nmr structure of denovo beta sheet design protein, northeast2 structural genomics consortium (nesg) target or664
64c6csfC_



not modelled 5.7 16
PDB header:membrane protein
Chain: C: PDB Molecule:sodium/alanine symporter agcs;
PDBTitle: crystal structure of sodium/alanine symporter agcs with d-alanine2 bound
65c1jb0X_



not modelled 5.6 38
PDB header:photosynthesis
Chain: X: PDB Molecule:photosystem i subunit psax;
PDBTitle: crystal structure of photosystem i: a photosynthetic reaction center2 and core antenna system from cyanobacteria
66d1jb0x_



not modelled 5.6 38
Fold:Single transmembrane helix
Superfamily:Subunit PsaX of photosystem I reaction centre
Family:Subunit PsaX of photosystem I reaction centre
67c4fe1X_



not modelled 5.6 38
PDB header:photosynthesis
Chain: X: PDB Molecule:photosystem i 4.8k protein;
PDBTitle: improving the accuracy of macromolecular structure refinement at 7 a2 resolution
68c4j29A_



not modelled 5.6 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:engineered protein or258;
PDBTitle: crystal structure of engineered protein. northeast structural genomics2 consortium target or258.
69c5o9zP_



not modelled 5.5 32
PDB header:splicing
Chain: P: PDB Molecule:u4/u6.u5 tri-snrnp-associated protein 1;
PDBTitle: cryo-em structure of a pre-catalytic human spliceosome primed for2 activation (b complex)
70c3kv1A_



not modelled 5.3 9
PDB header:transcription
Chain: A: PDB Molecule:transcriptional repressor;
PDBTitle: crystal structure of putative sugar-binding domain of transcriptional2 repressor from vibrio fischeri
71c2n28A_



not modelled 5.2 19
PDB header:viral protein
Chain: A: PDB Molecule:protein vpu;
PDBTitle: solid-state nmr structure of vpu
72c5o31Z_



not modelled 5.2 14
PDB header:oxidoreductase
Chain: Z: PDB Molecule:nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit
PDBTitle: mitochondrial complex i in the deactive state
73c4k1cB_



not modelled 5.1 15
PDB header:membrane protein/metal transport
Chain: B: PDB Molecule:vacuolar calcium ion transporter;
PDBTitle: vcx1 calcium/proton exchanger

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below