Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0922_(-)_1027689_1029341
DateFri Jul 26 01:50:51 BST 2019
Unique Job ID1314fb63c6561750
SequenceMIVRMRSCAQ ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:71.785 Y:58.658 Z:74.102
Model (left) based on template c6e7aY_
Top template information
PDB header:dna binding protein/dna/rna
Chain: Y: PDB Molecule:casx;
PDBTitle: casx-grna-dna(30bp) state ii
Confidence and coverage
Confidence: 96.5% Coverage: 40%
222 residues ( 40% of your sequence) have been modelled with 96.5% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6e7aY_
96.5 24
PDB header:dna binding protein/dna/rna
Chain: Y: PDB Molecule:casx;
PDBTitle: casx-grna-dna(30bp) state ii
2c5id6A_
95.3 18
PDB header:hydrolase
Chain: A: PDB Molecule:cpf1;
PDBTitle: structure of cpf1/rna complex
3c5wtiZ_
94.8 17
PDB header:hydrolase/dna/rna
Chain: Z: PDB Molecule:crispr-associated protein;
PDBTitle: crystal structure of the crispr-associated protein in complex with2 crrna and dna
4c5wqeA_
94.5 19
PDB header:rna binding protein
Chain: A: PDB Molecule:crispr-associated endonuclease c2c1;
PDBTitle: crystal structure of alicyclobacillus acidoterrestris c2c1 in complex2 with single-guide rna at 3.1 angstrom resolution
5c6iv6A_
94.2 23
PDB header:immune system/rna
Chain: A: PDB Molecule:nuclease;
PDBTitle: cryo-em structure of acrva5-acetylated mbcas12a in complex with crrna
6c1yuzB_
91.7 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:nigerythrin;
PDBTitle: partially reduced state of nigerythrin
7c6k0bH_
91.4 19
PDB header:rna binding protein/rna
Chain: H: PDB Molecule:ribonuclease p protein component 4;
PDBTitle: cryo-em structure of archaeal ribonuclease p with mature trna
8c2gb5B_
91.0 15
PDB header:hydrolase
Chain: B: PDB Molecule:nadh pyrophosphatase;
PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution
9c5b43A_
90.1 18
PDB header:hydrolase/rna/dna
Chain: A: PDB Molecule:crispr-associated endonuclease cpf1;
PDBTitle: crystal structure of acidaminococcus sp. cpf1 in complex with crrna2 and target dna
10c2zaeB_
86.8 16
PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease p protein component 4;
PDBTitle: crystal structure of protein ph1601p in complex with protein ph1771p2 of archaeal ribonuclease p from pyrococcus horikoshii ot3
11c5ijlA_
84.8 14
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase ii large subunit;
PDBTitle: d-family dna polymerase - dp2 subunit (catalytic subunit)
12c6f42V_
83.9 16
PDB header:transcription
Chain: V: PDB Molecule:transcription factor iiib 70 kda subunit;
PDBTitle: rna polymerase iii closed complex cc1.
13c1hk8A_
83.4 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase;
PDBTitle: structural basis for allosteric substrate specificity regulation in2 class iii ribonucleotide reductases: nrdd in complex with dgtp
14d1hk8a_
83.4 23
Fold:PFL-like glycyl radical enzymes
Superfamily:PFL-like glycyl radical enzymes
Family:Class III anaerobic ribonucleotide reductase NRDD subunit
15c5fz5M_
82.7 21
PDB header:transcription
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: transcription initiation complex structures elucidate dna opening (cc)
16c6hmsB_
82.1 14
PDB header:replication
Chain: B: PDB Molecule:dna polymerase ii large subunit,dna polymerase ii large
PDBTitle: cryo-em map of dna polymerase d from pyrococcus abyssi in complex with2 dna
17c6cnbR_
80.8 16
PDB header:transcription/dna
Chain: R: PDB Molecule:transcription factor iiib 70 kda subunit,tata-box-binding
PDBTitle: yeast rna polymerase iii initial transcribing complex
18c4u3eA_
79.7 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside triphosphate reductase;
PDBTitle: anaerobic ribonucleotide reductase
19c3k7aM_
79.5 12
PDB header:transcription
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: crystal structure of an rna polymerase ii-tfiib complex
20c5mgaA_
78.8 21
PDB header:hydrolase
Chain: A: PDB Molecule:crispr-associated endonuclease cpf1;
PDBTitle: structure of the cpf1 endonuclease r-loop complex after dna cleavage
21c4qiwP_
not modelled 78.3 15
PDB header:transcription
Chain: P: PDB Molecule:dna-directed rna polymerase subunit p;
PDBTitle: crystal structure of euryarchaeal rna polymerase from thermococcus2 kodakarensis
22d1pfta_
not modelled 78.2 16
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
23c5iy9M_
not modelled 78.1 17
PDB header:transcription, transferase/dna/rna
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: human holo-pic in the initial transcribing state (no iis)
24c3ky9B_
not modelled 77.3 11
PDB header:apoptosis
Chain: B: PDB Molecule:proto-oncogene vav;
PDBTitle: autoinhibited vav1
25c1nnjA_
not modelled 77.3 11
PDB header:hydrolase
Chain: A: PDB Molecule:formamidopyrimidine-dna glycosylase;
PDBTitle: crystal structure complex between the lactococcus lactis fpg and an2 abasic site containing dna
26c2vrwB_
not modelled 77.2 11
PDB header:signaling protein
Chain: B: PDB Molecule:proto-oncogene vav;
PDBTitle: critical structural role for the ph and c1 domains of the2 vav1 exchange factor
27c2lcqA_
not modelled 75.8 27
PDB header:metal binding protein
Chain: A: PDB Molecule:putative toxin vapc6;
PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii
28c5iy9Q_
not modelled 75.5 18
PDB header:transcription, transferase/dna/rna
Chain: Q: PDB Molecule:general transcription factor iie subunit 1;
PDBTitle: human holo-pic in the initial transcribing state (no iis)
29c1z2qA_
not modelled 74.0 22
PDB header:membrane protein
Chain: A: PDB Molecule:lm5-1;
PDBTitle: high-resolution solution structure of the lm5-1 fyve domain2 from leishmania major
30c3cngC_
not modelled 73.8 15
PDB header:hydrolase
Chain: C: PDB Molecule:nudix hydrolase;
PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea
31c4v1oM_
not modelled 73.3 13
PDB header:transcription
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: architecture of the rna polymerase ii-mediator core transcription2 initiation complex
32c6hv8A_
not modelled 71.7 10
PDB header:dna binding protein
Chain: A: PDB Molecule:dna polymerase epsilon catalytic subunit a;
PDBTitle: cryo-em structure of s. cerevisiae polymerase epsilon deltacat mutant
33c5m45I_
not modelled 70.4 31
PDB header:ligase
Chain: I: PDB Molecule:acetone carboxylase gamma subunit;
PDBTitle: structure of acetone carboxylase purified from xanthobacter2 autotrophicus
34c2f9iD_
not modelled 70.1 11
PDB header:transferase
Chain: D: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl transferase subunit
PDBTitle: crystal structure of the carboxyltransferase subunit of acc from2 staphylococcus aureus
35c1k82D_
not modelled 69.9 9
PDB header:hydrolase/dna
Chain: D: PDB Molecule:formamidopyrimidine-dna glycosylase;
PDBTitle: crystal structure of e.coli formamidopyrimidine-dna2 glycosylase (fpg) covalently trapped with dna
36c6gymW_
not modelled 69.9 16
PDB header:transcription
Chain: W: PDB Molecule:transcription initiation factor iie subunit alpha,
PDBTitle: structure of a yeast closed complex with distorted dna (ccdist)
37c4bpo9_
not modelled 69.6 22
PDB header:ribosome
Chain: 9: PDB Molecule:40s ribosomal protein rps31e;
PDBTitle: the crystal structure of the eukaryotic 40s ribosomal subunit in2 complex with eif1 and eif1a - complex 3
38c3ir9A_
not modelled 69.2 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:peptide chain release factor subunit 1;
PDBTitle: c-terminal domain of peptide chain release factor from methanosarcina2 mazei.
39d2ct1a1
not modelled 69.2 27
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
40d1dl6a_
not modelled 69.1 17
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
41c3t7lA_
not modelled 69.0 14
PDB header:transport protein
Chain: A: PDB Molecule:zinc finger fyve domain-containing protein 16;
PDBTitle: crystal structure of the fyve domain of endofin (zfyve16) at 1.1a2 resolution
42c2ba1B_
not modelled 68.4 30
PDB header:rna binding protein
Chain: B: PDB Molecule:archaeal exosome rna binding protein csl4;
PDBTitle: archaeal exosome core
43c3j3v0_
not modelled 68.1 13
PDB header:ribosome
Chain: 0: PDB Molecule:50s ribosomal protein l32;
PDBTitle: atomic model of the immature 50s subunit from bacillus subtilis (state2 i-a)
44d2j0151
not modelled 67.4 17
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L32p
45c3bjiA_
not modelled 67.3 12
PDB header:signaling protein
Chain: A: PDB Molecule:proto-oncogene vav;
PDBTitle: structural basis of promiscuous guanine nucleotide exchange2 by the t-cell essential vav1
46c5fywW_
not modelled 67.3 15
PDB header:transcription
Chain: W: PDB Molecule:transcription initiation factor iie subunit alpha;
PDBTitle: transcription initiation complex structures elucidate dna opening (oc)
47c1dvpA_
not modelled 67.2 21
PDB header:transferase
Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine
PDBTitle: crystal structure of the vhs and fyve tandem domains of hrs,2 a protein involved in membrane trafficking and signal3 transduction
48c5vbnB_
not modelled 67.0 18
PDB header:transferase
Chain: B: PDB Molecule:dna polymerase epsilon catalytic subunit a;
PDBTitle: crystal structure of human dna polymerase epsilon b-subunit in complex2 with c-terminal domain of catalytic subunit
49c5oqjW_
not modelled 66.5 16
PDB header:transcription
Chain: W: PDB Molecule:transcription initiation factor iie subunit alpha;
PDBTitle: structure of yeast transcription pre-initiation complex with tfiih
50c3na7A_
not modelled 66.3 18
PDB header:gene regulation, chaperone
Chain: A: PDB Molecule:hp0958;
PDBTitle: 2.2 angstrom structure of the hp0958 protein from helicobacter pylori2 ccug 17874
51d2f9yb1
not modelled 66.0 15
Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Biotin dependent carboxylase carboxyltransferase domain
52c2f9yB_
not modelled 66.0 15
PDB header:ligase
Chain: B: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl transferase subunit
PDBTitle: the crystal structure of the carboxyltransferase subunit of acc from2 escherichia coli
53c2nn6I_
not modelled 65.8 19
PDB header:hydrolase/transferase
Chain: I: PDB Molecule:3'-5' exoribonuclease csl4 homolog;
PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40
54c5x2hA_
not modelled 65.7 16
PDB header:hydrolase/rna/dna
Chain: A: PDB Molecule:crispr-associated endonuclease cas9;
PDBTitle: crystal structure of campylobacter jejuni cas9 in complex with sgrna2 and target dna (agaaaca pam)
55c2joxA_
not modelled 65.4 19
PDB header:transcription
Chain: A: PDB Molecule:churchill protein;
PDBTitle: embryonic neural inducing factor churchill is not a dna-2 binding zinc finger protein: solution structure reveals a3 solvent-exposed beta-sheet and zinc binuclear cluster
56c5l9wC_
not modelled 65.2 15
PDB header:ligase
Chain: C: PDB Molecule:acetophenone carboxylase beta subunit;
PDBTitle: crystal structure of the apc core complex
57c1kcfB_
not modelled 64.8 27
PDB header:hydrolase
Chain: B: PDB Molecule:hypothetical 30.2 kd protein c25g10.02 in
PDBTitle: crystal structure of the yeast mitochondrial holliday2 junction resolvase, ydc2
58c2opfA_
not modelled 64.2 12
PDB header:hydrolase/dna
Chain: A: PDB Molecule:endonuclease viii;
PDBTitle: crystal structure of the dna repair enzyme endonuclease-viii (nei)2 from e. coli (r252a) in complex with ap-site containing dna substrate
59c5oqmW_
not modelled 64.0 16
PDB header:transcription
Chain: W: PDB Molecule:transcription factor tfiie subunit;
PDBTitle: structure of yeast transcription pre-initiation complex with tfiih and2 core mediator
60c3gn5B_
not modelled 63.7 15
PDB header:dna binding protein
Chain: B: PDB Molecule:hth-type transcriptional regulator mqsa (ygit/b3021);
PDBTitle: structure of the e. coli protein mqsa (ygit/b3021)
61c1ee8A_
not modelled 63.5 12
PDB header:dna binding protein
Chain: A: PDB Molecule:mutm (fpg) protein;
PDBTitle: crystal structure of mutm (fpg) protein from thermus thermophilus hb8
62c3k1fM_
not modelled 63.2 13
PDB header:transcription
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: crystal structure of rna polymerase ii in complex with tfiib
63c5axwA_
not modelled 63.0 18
PDB header:hydrolase/rna/dna
Chain: A: PDB Molecule:crispr-associated endonuclease cas9;
PDBTitle: crystal structure of staphylococcus aureus cas9 in complex with sgrna2 and target dna (ttgggt pam)
64d6rxna_
not modelled 62.9 19
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
65c6o9lQ_
not modelled 62.9 18
PDB header:transcription/dna
Chain: Q: PDB Molecule:general transcription factor iie subunit 1;
PDBTitle: human holo-pic in the closed state
66c1y1yS_
not modelled 62.7 14
PDB header:transferase/transcription/dna-rna hybrid
Chain: S: PDB Molecule:transcription elongation factor s-ii;
PDBTitle: rna polymerase ii-tfiis-dna/rna complex
67d1x3za1
not modelled 62.5 11
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Transglutaminase core
68c1dvbA_
not modelled 62.1 23
PDB header:electron transport
Chain: A: PDB Molecule:rubrerythrin;
PDBTitle: rubrerythrin
69d1joca1
not modelled 61.5 22
Fold:FYVE/PHD zinc finger
Superfamily:FYVE/PHD zinc finger
Family:FYVE, a phosphatidylinositol-3-phosphate binding domain
70c2hr5B_
not modelled 60.8 33
PDB header:metal binding protein
Chain: B: PDB Molecule:rubrerythrin;
PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form
71c2f5qA_
not modelled 60.7 16
PDB header:hydrolase/dna
Chain: A: PDB Molecule:formamidopyrimidine-dna glycosidase;
PDBTitle: catalytically inactive (e3q) mutm crosslinked to oxog:c2 containing dna cc2
72d2zjrz1
not modelled 60.7 27
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L32p
73c1pqvS_
not modelled 60.2 14
PDB header:transferase/transcription
Chain: S: PDB Molecule:transcription elongation factor s-ii;
PDBTitle: rna polymerase ii-tfiis complex
74c2dcuB_
not modelled 59.8 33
PDB header:translation
Chain: B: PDB Molecule:translation initiation factor 2 beta subunit;
PDBTitle: crystal structure of translation initiation factor aif2betagamma2 heterodimer with gdp
75c6g5iy_
not modelled 59.5 35
PDB header:ribosome
Chain: Y: PDB Molecule:40s ribosomal protein s24;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state r
76c6qg3P_
not modelled 58.8 19
PDB header:translation
Chain: P: PDB Molecule:eukaryotic translation initiation factor 2 subunit beta;
PDBTitle: structure of eif2b-eif2 (phosphorylated at ser51) complex (model b)
77c4c2mX_
not modelled 58.7 11
PDB header:transcription
Chain: X: PDB Molecule:dna-directed rna polymerase i subunit rpa12;
PDBTitle: structure of rna polymerase i at 2.8 a resolution
78d1twfi2
not modelled 57.9 14
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
79c2yqmA_
not modelled 57.8 11
PDB header:protein transport
Chain: A: PDB Molecule:run and fyve domain-containing protein 1;
PDBTitle: solution structure of the fyve domain in zinc finger fyve2 domain-containing protein 12
80d1dvpa2
not modelled 57.7 20
Fold:FYVE/PHD zinc finger
Superfamily:FYVE/PHD zinc finger
Family:FYVE, a phosphatidylinositol-3-phosphate binding domain
81c3a44D_
not modelled 57.4 19
PDB header:metal binding protein
Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa;
PDBTitle: crystal structure of hypa in the dimeric form
82c2xzn9_
not modelled 56.7 16
PDB header:ribosome
Chain: 9: PDB Molecule:rps31e;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
83d2nn6i1
not modelled 56.0 19
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
84c5iycU_
not modelled 55.7 14
PDB header:transcription, transferase/dna
Chain: U: PDB Molecule:transcription elongation factor a protein 1;
PDBTitle: human core-pic in the initial transcribing state
85c1x4uA_
not modelled 55.4 18
PDB header:lipid binding protein
Chain: A: PDB Molecule:zinc finger, fyve domain containing 27 isoform b;
PDBTitle: solution structure of the fyve domain from human fyve2 domain containing 27 isoform b protein
86d2fiya1
not modelled 55.4 12
Fold:FdhE-like
Superfamily:FdhE-like
Family:FdhE-like
87c3izrm_
not modelled 54.8 19
PDB header:ribosome
Chain: M: PDB Molecule:60s ribosomal protein l23 (l14p);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
88c3cw2M_
not modelled 54.6 19
PDB header:translation
Chain: M: PDB Molecule:translation initiation factor 2 subunit beta;
PDBTitle: crystal structure of the intact archaeal translation initiation factor2 2 from sulfolobus solfataricus .
89c2qa4Z_
not modelled 54.2 11
PDB header:ribosome
Chain: Z: PDB Molecule:50s ribosomal protein l37ae;
PDBTitle: a more complete structure of the the l7/l12 stalk of the2 haloarcula marismortui 50s large ribosomal subunit
90c2xzm9_
not modelled 54.0 16
PDB header:ribosome
Chain: 9: PDB Molecule:rps31e;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
91d1kcfa2
not modelled 53.9 27
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Mitochondrial resolvase ydc2 catalytic domain
92c4b6ap_
not modelled 53.4 15
PDB header:ribosome
Chain: P: PDB Molecule:60s ribosomal protein l17-a;
PDBTitle: cryo-em structure of the 60s ribosomal subunit in complex2 with arx1 and rei1
93d1yuza2
not modelled 53.1 43
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
94c2m4yA_
not modelled 52.4 17
PDB header:electron transport
Chain: A: PDB Molecule:rubredoxin;
PDBTitle: rubredoxin type protein from mycobacterium ulcerans
95c3wwnB_
not modelled 52.2 17
PDB header:metal binding protein/transferase
Chain: B: PDB Molecule:orff;
PDBTitle: crystal structure of lysz from thermus thermophilus complex with lysw
96d1k81a_
not modelled 52.1 30
Fold:Zinc-binding domain of translation initiation factor 2 beta
Superfamily:Zinc-binding domain of translation initiation factor 2 beta
Family:Zinc-binding domain of translation initiation factor 2 beta
97d1ffkw_
not modelled 51.8 22
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L37ae
98c1s1i9_
not modelled 51.8 15
PDB header:ribosome
Chain: 9: PDB Molecule:60s ribosomal protein l43;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1i, contains 60s subunit. the 40s4 ribosomal subunit is in file 1s1h.
99c2aklA_
not modelled 51.2 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:phna-like protein pa0128;
PDBTitle: solution structure for phn-a like protein pa0128 from2 pseudomonas aeruginosa
100d1vqoz1
not modelled 50.6 11
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L37ae
101c2qkdA_
not modelled 50.5 18
PDB header:signaling protein, cell cycle
Chain: A: PDB Molecule:zinc finger protein zpr1;
PDBTitle: crystal structure of tandem zpr1 domains
102c5fmfR_
not modelled 50.5 16
PDB header:transcription
Chain: R: PDB Molecule:transcription initiation factor iie subunit alpha, tfa1;
PDBTitle: the p-lobe of rna polymerase ii pre-initiation complex
103d1x68a2
not modelled 50.3 32
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
104c5xonU_
not modelled 50.0 11
PDB header:transcription/rna
Chain: U: PDB Molecule:general transcription elongation factor tfiis;
PDBTitle: rna polymerase ii elongation complex bound with spt4/5 and tfiis
105c1neeA_
not modelled 49.9 37
PDB header:translation
Chain: A: PDB Molecule:probable translation initiation factor 2 beta
PDBTitle: structure of archaeal translation factor aif2beta from2 methanobacterium thermoautrophicum
106c3zyqA_
not modelled 49.7 14
PDB header:signaling
Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine kinase
PDBTitle: crystal structure of the tandem vhs and fyve domains of hepatocyte2 growth factor-regulated tyrosine kinase substrate (hgs-hrs) at 1.48 a3 resolution
107c5nfvA_
not modelled 49.7 22
PDB header:hydrolase
Chain: A: PDB Molecule:crispr-associated endonuclease cpf1;
PDBTitle: crystal structure of catalytically inactive fncas12 mutant bound to an2 r-loop structure containing a pre-crrna mimic and full-length dna3 target
108c3jyw9_
not modelled 49.4 15
PDB header:ribosome
Chain: 9: PDB Molecule:60s ribosomal protein l43;
PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution
109c4zlhB_
not modelled 49.1 19
PDB header:metal binding protein
Chain: B: PDB Molecule:lipopolysaccharide assembly protein b;
PDBTitle: structure of the lapb cytoplasmic domain at 2 angstroms
110c3j39p_
not modelled 49.0 19
PDB header:ribosome
Chain: P: PDB Molecule:60s ribosomal protein l17;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
111c3j21i_
not modelled 49.0 15
PDB header:ribosome
Chain: I: PDB Molecule:50s ribosomal protein l13p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
112c2kdxA_
not modelled 48.7 14
PDB header:metal-binding protein
Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein
PDBTitle: solution structure of hypa protein
113d1jj2y_
not modelled 48.5 15
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L37ae
114d1lkoa2
not modelled 48.2 21
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
115c3cc4Z_
not modelled 48.1 11
PDB header:ribosome
Chain: Z: PDB Molecule:50s ribosomal protein l37ae;
PDBTitle: co-crystal structure of anisomycin bound to the 50s ribosomal subunit
116c3zf7o_
not modelled 47.6 11
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l13a, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
117c2kaeA_
not modelled 47.6 16
PDB header:transcription/dna
Chain: A: PDB Molecule:gata-type transcription factor;
PDBTitle: data-driven model of med1:dna complex
118c2zkrz_
not modelled 47.6 22
PDB header:ribosomal protein/rna
Chain: Z: PDB Molecule:e site t-rna;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
119d1vfya_
not modelled 46.9 27
Fold:FYVE/PHD zinc finger
Superfamily:FYVE/PHD zinc finger
Family:FYVE, a phosphatidylinositol-3-phosphate binding domain
120c3twkB_
not modelled 46.9 5
PDB header:hydrolase
Chain: B: PDB Molecule:formamidopyrimidine-dna glycosylase 1;
PDBTitle: crystal structure of arabidopsis thaliana fpg

Binding site prediction 

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If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite