Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0923c_(-)_1029517_1030581
DateFri Jul 26 01:50:51 BST 2019
Unique Job IDb8716019b37501cf
SequenceMPDRRHPYFA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:40.509 Y:46.126 Z:40.439
Model (left) based on template c3a9lB_
Top template information
PDB header:hydrolase
Chain: B: PDB Molecule:poly-gamma-glutamate hydrolase;
PDBTitle: structure of bacteriophage poly-gamma-glutamate hydrolase
Confidence and coverage
Confidence:100.0% Coverage: 52%
183 residues ( 52% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
335 residues ( 95%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3a9lB_



100.0 26
PDB header:hydrolase
Chain: B: PDB Molecule:poly-gamma-glutamate hydrolase;
PDBTitle: structure of bacteriophage poly-gamma-glutamate hydrolase
2c5onkA_



100.0 27
PDB header:hydrolase
Chain: A: PDB Molecule:yndl;
PDBTitle: native yndl
3c2qikA_



100.0 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0131 protein ykqa;
PDBTitle: crystal structure of ykqa from bacillus subtilis. northeast structural2 genomics target sr631
4c2rbhA_



100.0 29
PDB header:transferase
Chain: A: PDB Molecule:gamma-glutamyl cyclotransferase;
PDBTitle: gamma-glutamyl cyclotransferase
5c2g0qA_



99.8 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:at5g39720.1 protein;
PDBTitle: solution structure of at5g39720.1 from arabidopsis thaliana
6c2jqvA_



99.7 20
PDB header:structural genomics
Chain: A: PDB Molecule:aig2 protein-like;
PDBTitle: solution structure at3g28950.1 from arabidopsis thaliana
7d1xhsa_



99.7 20
Fold:Gamma-glutamyl cyclotransferase-like
Superfamily:Gamma-glutamyl cyclotransferase-like
Family:Gamma-glutamyl cyclotransferase-like
8d1v30a_



99.3 11
Fold:Gamma-glutamyl cyclotransferase-like
Superfamily:Gamma-glutamyl cyclotransferase-like
Family:Gamma-glutamyl cyclotransferase-like
9d1vkba_



99.3 21
Fold:Gamma-glutamyl cyclotransferase-like
Superfamily:Gamma-glutamyl cyclotransferase-like
Family:Gamma-glutamyl cyclotransferase-like
10c5hwiA_



99.3 24
PDB header:transferase
Chain: A: PDB Molecule:glutathione-specific gamma-glutamylcyclotransferase;
PDBTitle: crystal structure of selenomethionine labelled gama glutamyl2 cyclotransferease specific to glutathione from yeast
11c3jubA_



99.2 24
PDB header:transferase
Chain: A: PDB Molecule:aig2-like domain-containing protein 1;
PDBTitle: human gamma-glutamylamine cyclotransferase
12c5c5zA_



96.2 12
PDB header:hydrolase
Chain: A: PDB Molecule:glutamyl-trna amidotransferase;
PDBTitle: crystal structure analysis of c4763, a uropathogenic e. coli-specific2 protein
13d2q7sa1



94.7 14
Fold:Phosphorylase/hydrolase-like
Superfamily:Zn-dependent exopeptidases
Family:FGase-like
14d2odfa1



93.5 16
Fold:Phosphorylase/hydrolase-like
Superfamily:Zn-dependent exopeptidases
Family:FGase-like
15c2r60A_



55.6 27
PDB header:transferase
Chain: A: PDB Molecule:glycosyl transferase, group 1;
PDBTitle: structure of apo sucrose phosphate synthase (sps) of2 halothermothrix orenii
16c3bjrA_



54.2 15
PDB header:hydrolase
Chain: A: PDB Molecule:putative carboxylesterase;
PDBTitle: crystal structure of a putative carboxylesterase (lp_1002) from2 lactobacillus plantarum wcfs1 at 2.09 a resolution
17c5d92B_



51.7 24
PDB header:membrane protein
Chain: B: PDB Molecule:af2299 protein,phosphatidylinositol synthase;
PDBTitle: structure of a phosphatidylinositolphosphate (pip) synthase from2 renibacterium salmoninarum
18c2qjwA_



50.8 19
PDB header:hydrolase
Chain: A: PDB Molecule:uncharacterized protein xcc1541;
PDBTitle: crystal structure of a putative hydrolase of the alpha/beta2 superfamily (xcc1541) from xanthomonas campestris pv. campestris at3 1.35 a resolution
19c5synB_



46.4 11
PDB header:hydrolase/hydrolase inhibitor
Chain: B: PDB Molecule:acyl-protein thioesterase 2;
PDBTitle: cocrystal structure of the human acyl protein thioesterase 2 with an2 isoform-selective inhibitor, ml349
20c4o6mA_



41.6 24
PDB header:transferase
Chain: A: PDB Molecule:af2299, a cdp-alcohol phosphotransferase;
PDBTitle: structure of af2299, a cdp-alcohol phosphotransferase (cmp-bound)
21c5zesA_



not modelled 38.1 30
PDB header:transferase
Chain: A: PDB Molecule:udp-glucose:tetrahydrobiopterin glucosyltransferase;
PDBTitle: udp glucose alpha tetrahydrobiopterin glycosyltransferase from2 synechococcus species pcc 7942 - udp complex
22c5jyuA_



not modelled 34.3 18
PDB header:sigaling protein
Chain: A: PDB Molecule:two-component sensor histidine kinase;
PDBTitle: nmr structure of pseudo receiver domain of cika from2 thermosynechococcus elongatus
23c4wy5A_



not modelled 33.9 18
PDB header:hydrolase
Chain: A: PDB Molecule:esterase;
PDBTitle: structural analysis of two fungal esterases from rhizomucor miehei2 explaining their substrate specificity
24c2jjmH_



not modelled 32.7 21
PDB header:transferase
Chain: H: PDB Molecule:glycosyl transferase, group 1 family protein;
PDBTitle: crystal structure of a family gt4 glycosyltransferase from bacillus2 anthracis orf ba1558.
25c2m2jA_



not modelled 31.6 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative periplasmic protein;
PDBTitle: solution nmr structure of the n-terminal domain of stm1478 from2 salmonella typhimurium lt2: target str147a of the northeast3 structural genomics consortium (nesg), and apc101565 of the midwest4 center for structural genomics (mcsg).
26c3nohA_



not modelled 31.5 18
PDB header:peptide binding protein
Chain: A: PDB Molecule:putative peptide binding protein;
PDBTitle: crystal structure of a putative peptide binding protein (rumgna_00914)2 from ruminococcus gnavus atcc 29149 at 1.60 a resolution
27c5xb6D_



not modelled 29.6 16
PDB header:hydrolase
Chain: D: PDB Molecule:uncharacterized protein ycjy;
PDBTitle: crystal structure of ycjy from e. coli
28d1luaa2



not modelled 29.2 17
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Methylene-tetrahydromethanopterin dehydrogenase
29d1uxoa_



not modelled 28.5 22
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:YdeN-like
30d1xova2



not modelled 28.4 14
Fold:Phosphorylase/hydrolase-like
Superfamily:Zn-dependent exopeptidases
Family:N-acetylmuramoyl-L-alanine amidase-like
31c3eikB_



not modelled 28.4 17
PDB header:transcription
Chain: B: PDB Molecule:tata-box-binding protein;
PDBTitle: double stranded dna binding protein
32c5g59A_



not modelled 27.5 8
PDB header:structural protein
Chain: A: PDB Molecule:esterase;
PDBTitle: structure of the pyrococcus furiosus esterase pf2001 with space group2 p3121
33d1xjca_



not modelled 26.9 25
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
34c3fakA_



not modelled 24.8 18
PDB header:hydrolase
Chain: A: PDB Molecule:esterase/lipase;
PDBTitle: structural and functional analysis of a hormone-sensitive2 lipase like este5 from a metagenome library
35c5n0lC_



not modelled 24.6 15
PDB header:transcription
Chain: C: PDB Molecule:gtp-sensing transcriptional pleiotropic repressor cody;
PDBTitle: the structure of the cofactor binding gaf domain of the nutrient2 sensor cody from clostridium difficile
36c1ngmM_



not modelled 23.5 18
PDB header:transcription/dna
Chain: M: PDB Molecule:transcription initiation factor tfiid;
PDBTitle: crystal structure of a yeast brf1-tbp-dna ternary complex
37c6d9tA_



not modelled 22.9 21
PDB header:transferase
Chain: A: PDB Molecule:glycosyl transferase;
PDBTitle: bsha from staphylococcus aureus complexed with udp
38d2ejna1



not modelled 22.6 14
Fold:Uteroglobin-like
Superfamily:Uteroglobin-like
Family:Uteroglobin-like
39c4m6iA_



not modelled 21.3 19
PDB header:hydrolase
Chain: A: PDB Molecule:peptidoglycan amidase rv3717;
PDBTitle: structure of the reduced, zn-bound form of mycobacterium tuberculosis2 peptidoglycan amidase rv3717
40c3f6sI_



not modelled 20.4 21
PDB header:electron transport
Chain: I: PDB Molecule:flavodoxin;
PDBTitle: desulfovibrio desulfuricans (atcc 29577) oxidized flavodoxin alternate2 conformers
41c3majA_



not modelled 19.6 19
PDB header:dna binding protein
Chain: A: PDB Molecule:dna processing chain a;
PDBTitle: crystal structure of putative dna processing protein dpra from2 rhodopseudomonas palustris cga009
42d1dxha2



not modelled 19.5 24
Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
43c1rm1A_



not modelled 18.6 18
PDB header:transcription/dna
Chain: A: PDB Molecule:tata-box binding protein;
PDBTitle: structure of a yeast tfiia/tbp/tata-box dna complex
44d1qb5d_



not modelled 18.6 31
Fold:OB-fold
Superfamily:Bacterial enterotoxins
Family:Bacterial AB5 toxins, B-subunits
45c1mp9B_



not modelled 18.1 14
PDB header:dna binding protein
Chain: B: PDB Molecule:tata-binding protein;
PDBTitle: tbp from a mesothermophilic archaeon, sulfolobus acidocaldarius
46d2iv2x1



not modelled 17.9 20
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
47d1utga_



not modelled 17.2 25
Fold:Uteroglobin-like
Superfamily:Uteroglobin-like
Family:Uteroglobin-like
48c2z8uQ_



not modelled 17.2 23
PDB header:transcription
Chain: Q: PDB Molecule:tata-box-binding protein;
PDBTitle: methanococcus jannaschii tbp
49c3m1pA_



not modelled 16.9 17
PDB header:isomerase
Chain: A: PDB Molecule:ribose 5-phosphate isomerase;
PDBTitle: structure of ribose 5-phosphate isomerase type b from trypanosoma2 cruzi, soaked with allose-6-phosphate
50c3k7pA_



not modelled 16.9 17
PDB header:isomerase
Chain: A: PDB Molecule:ribose 5-phosphate isomerase;
PDBTitle: structure of mutant of ribose 5-phosphate isomerase type b from2 trypanosoma cruzi.
51d1q6za1



not modelled 16.8 16
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
52d1hh1a_



not modelled 16.6 22
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Hjc-like
53d1v77a_



not modelled 16.5 19
Fold:7-stranded beta/alpha barrel
Superfamily:PHP domain-like
Family:RNase P subunit p30
54c2zshA_



not modelled 16.1 17
PDB header:hormone receptor
Chain: A: PDB Molecule:probable gibberellin receptor gid1l1;
PDBTitle: structural basis of gibberellin(ga3)-induced della2 recognition by the gibberellin receptor
55c3hxkB_



not modelled 16.0 29
PDB header:hydrolase
Chain: B: PDB Molecule:sugar hydrolase;
PDBTitle: crystal structure of a sugar hydrolase (yeeb) from lactococcus lactis,2 northeast structural genomics consortium target kr108
56d1wu7a1



not modelled 15.9 15
Fold:Anticodon-binding domain-like
Superfamily:Class II aaRS ABD-related
Family:Anticodon-binding domain of Class II aaRS
57c4h2dB_



not modelled 15.7 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:nadph-dependent diflavin oxidoreductase 1;
PDBTitle: crystal structure of ndor1
58d2noca1



not modelled 15.6 10
Fold:Dodecin subunit-like
Superfamily:YdgH-like
Family:YdgH-like
59c1ycdA_



not modelled 15.1 11
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical 27.3 kda protein in aap1-smf2
PDBTitle: crystal structure of yeast fsh1/yhr049w, a member of the2 serine hydrolase family
60c4b0aA_



not modelled 15.1 17
PDB header:transcription
Chain: A: PDB Molecule:transcription initiation factor tfiid subunit 1, linker,
PDBTitle: the high-resolution structure of ytbp-ytaf1 identifies2 conserved and competing interaction surfaces in3 transcriptional activation
61c2ejnB_



not modelled 15.0 14
PDB header:allergen
Chain: B: PDB Molecule:major allergen i polypeptide chain 1, chain 2;
PDBTitle: structural characterization of the tetrameric form of the major cat2 allergen fel d 1
62c2dfwA_



not modelled 14.6 29
PDB header:hydrolase
Chain: A: PDB Molecule:salt-tolerant glutaminase;
PDBTitle: crystal structure of a major fragment of the salt-tolerant2 glutaminase from micrococcus luteus k-3
63c1d3uA_



not modelled 14.5 20
PDB header:gene regulation/dna
Chain: A: PDB Molecule:tata-binding protein;
PDBTitle: tata-binding protein/transcription factor (ii)b/bre+tata-2 box complex from pyrococcus woesei
64c3gpiA_



not modelled 14.3 30
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase;
PDBTitle: structure of putative nad-dependent epimerase/dehydratase from2 methylobacillus flagellatus
65c2wtmC_



not modelled 14.3 14
PDB header:hydrolase
Chain: C: PDB Molecule:est1e;
PDBTitle: est1e from butyrivibrio proteoclasticus
66c6mu0A_



not modelled 14.3 15
PDB header:isomerase
Chain: A: PDB Molecule:probable ribose-5-phosphate isomerase b;
PDBTitle: crystal structure of ribose-5-phosphate isomerase b from mycoplasma2 genitalium with bound ribulose-5-phosphate
67d2v4ja2



not modelled 14.1 17
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:DsrA/DsrB N-terminal-domain-like
68c5vtoA_



not modelled 14.1 22
PDB header:hydrolase
Chain: A: PDB Molecule:blasticidin m;
PDBTitle: solution structure of blsm
69c3s5pA_



not modelled 14.0 28
PDB header:isomerase
Chain: A: PDB Molecule:ribose 5-phosphate isomerase;
PDBTitle: crystal structure of ribose-5-phosphate isomerase b rpib from giardia2 lamblia
70c2i3dA_



not modelled 13.9 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein atu1826;
PDBTitle: crystal structure of protein of unknown function atu1826, a putative2 alpha/beta hydrolase from agrobacterium tumefaciens
71d2i3da1



not modelled 13.9 20
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Atu1826-like
72c4qnnC_



not modelled 13.8 12
PDB header:hydrolase
Chain: C: PDB Molecule:phospholipase a 1 from hornet(vespa basalis) venom;
PDBTitle: crystal structure of phospholipase a 1 from hornet(vespa basalis)2 venom
73c6fxsA_



not modelled 13.7 10
PDB header:isomerase
Chain: A: PDB Molecule:ribose 5-phosphate isomerase, putative;
PDBTitle: structure of trypanosoma brucei type b ribose 5-phosphate isomerase
74d1utra_



not modelled 13.6 19
Fold:Uteroglobin-like
Superfamily:Uteroglobin-like
Family:Uteroglobin-like
75c4xb6D_



not modelled 13.6 30
PDB header:transferase
Chain: D: PDB Molecule:alpha-d-ribose 1-methylphosphonate 5-phosphate c-p lyase;
PDBTitle: structure of the e. coli c-p lyase core complex
76d1g8ka1



not modelled 13.4 25
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
77d1txga2



not modelled 13.1 9
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
78c2hdwB_



not modelled 13.0 21
PDB header:hydrolase
Chain: B: PDB Molecule:hypothetical protein pa2218;
PDBTitle: crystal structure of hypothetical protein pa2218 from pseudomonas2 aeruginosa
79c1puoA_



not modelled 12.6 13
PDB header:allergen
Chain: A: PDB Molecule:major allergen i polypeptide, fused chain 2, chain 1;
PDBTitle: crystal structure of fel d 1- the major cat allergen
80d1miua4



not modelled 12.5 11
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
81d1o1xa_



not modelled 12.4 17
Fold:Ribose/Galactose isomerase RpiB/AlsB
Superfamily:Ribose/Galactose isomerase RpiB/AlsB
Family:Ribose/Galactose isomerase RpiB/AlsB
82c2iv3B_



not modelled 12.4 24
PDB header:transferase
Chain: B: PDB Molecule:glycosyltransferase;
PDBTitle: crystal structure of avigt4, a glycosyltransferase involved2 in avilamycin a biosynthesis
83d2vvpa1



not modelled 12.2 17
Fold:Ribose/Galactose isomerase RpiB/AlsB
Superfamily:Ribose/Galactose isomerase RpiB/AlsB
Family:Ribose/Galactose isomerase RpiB/AlsB
84d2dfaa1



not modelled 12.1 21
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:LamB/YcsF-like
85c4em8A_



not modelled 12.0 22
PDB header:isomerase
Chain: A: PDB Molecule:ribose 5-phosphate isomerase b;
PDBTitle: the structure of ribose 5-phosphate isomerase b from anaplasma2 phagocytophilum
86d1kn6a_



not modelled 11.9 26
Fold:Ferredoxin-like
Superfamily:Protease propeptides/inhibitors
Family:Prohormone convertase 1 pro-domain
87d2auna2



not modelled 11.7 13
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:LD-carboxypeptidase A N-terminal domain-like
88c3he8A_



not modelled 11.6 22
PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase;
PDBTitle: structural study of clostridium thermocellum ribose-5-phosphate2 isomerase b
89c5b3kA_



not modelled 11.5 17
PDB header:electron transport
Chain: A: PDB Molecule:uncharacterized protein pa3435;
PDBTitle: c101a mutant of flavodoxin from pseudomonas aeruginosa
90c2ydyA_



not modelled 11.5 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:methionine adenosyltransferase 2 subunit beta;
PDBTitle: crystal structure of human s-adenosylmethionine synthetase 2, beta2 subunit in orthorhombic crystal form
91d1ccda_



not modelled 11.5 19
Fold:Uteroglobin-like
Superfamily:Uteroglobin-like
Family:Uteroglobin-like
92d1iioa_



not modelled 11.5 17
Fold:EF Hand-like
Superfamily:Hypothetical protein MTH865
Family:Hypothetical protein MTH865
93c6ejiA_



not modelled 11.5 18
PDB header:transferase
Chain: A: PDB Molecule:wlac protein;
PDBTitle: structure of a glycosyltransferase
94c4za1A_



not modelled 11.4 5
PDB header:transferase
Chain: A: PDB Molecule:nosa;
PDBTitle: crystal structure of nosa involved in nosiheptide biosynthesis
95c3guxA_



not modelled 11.4 19
PDB header:hydrolase
Chain: A: PDB Molecule:putative zn-dependent exopeptidase;
PDBTitle: crystal structure of a putative zn-dependent exopeptidase (bvu_1317)2 from bacteroides vulgatus atcc 8482 at 1.80 a resolution
96d1h0ha1



not modelled 11.4 20
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
97d1j1ta_



not modelled 11.3 15
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Alginate lyase
98d1nn4a_



not modelled 10.9 22
Fold:Ribose/Galactose isomerase RpiB/AlsB
Superfamily:Ribose/Galactose isomerase RpiB/AlsB
Family:Ribose/Galactose isomerase RpiB/AlsB
99d1cdwa1



not modelled 10.8 13
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain

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