Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0930_(pstA1)_1037015_1037917
DateFri Jul 26 01:50:52 BST 2019
Unique Job IDf20fd079b7784170
SequenceMSIEALDQPV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:73.103 Y:47.023 Z:68.209
Model (left) based on template c4tqvI_
Top template information
PDB header:transport protein
Chain: I: PDB Molecule:algm1;
PDBTitle: crystal structure of a bacterial abc transporter involved in the2 import of the acidic polysaccharide alginate
Confidence and coverage
Confidence:100.0% Coverage: 89%
267 residues ( 89% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4tqvI_



100.0 13
PDB header:transport protein
Chain: I: PDB Molecule:algm1;
PDBTitle: crystal structure of a bacterial abc transporter involved in the2 import of the acidic polysaccharide alginate
2c3fh6F_



100.0 15
PDB header:transport protein
Chain: F: PDB Molecule:maltose transport system permease protein malf;
PDBTitle: crystal structure of the resting state maltose transporter from e.2 coli
3c4tqvJ_



100.0 12
PDB header:transport protein
Chain: J: PDB Molecule:algm2;
PDBTitle: crystal structure of a bacterial abc transporter involved in the2 import of the acidic polysaccharide alginate
4c2r6gF_



100.0 16
PDB header:hydrolase/transport protein
Chain: F: PDB Molecule:maltose transport system permease protein malf;
PDBTitle: the crystal structure of the e. coli maltose transporter
5d2r6gg1



100.0 13
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
6d2r6gf2



100.0 16
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
7d2onkc1



100.0 19
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
8c2onkC_



100.0 19
PDB header:membrane protein
Chain: C: PDB Molecule:molybdate/tungstate abc transporter, permease
PDBTitle: abc transporter modbc in complex with its binding protein2 moda
9d3d31c1



100.0 22
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
10c3d31D_



100.0 22
PDB header:transport protein
Chain: D: PDB Molecule:sulfate/molybdate abc transporter, permease protein;
PDBTitle: modbc from methanosarcina acetivorans
11c4ymuC_



100.0 15
PDB header:protein binding/transport protein
Chain: C: PDB Molecule:abc-type amino acid transport system, permease component;
PDBTitle: crystal structure of an amino acid abc transporter complex with2 arginines and atps
12d3dhwa1



100.0 21
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
13c5kbuA_



87.6 15
PDB header:transport protein
Chain: A: PDB Molecule:glutamate receptor 2,voltage-dependent calcium channel
PDBTitle: cryo-em structure of glua2-2xstz complex at 7.8 angstrom resolution
14c2m8gX_



38.7 23
PDB header:transcription
Chain: X: PDB Molecule:transcriptional regulator;
PDBTitle: structure, function, and tethering of dna-binding domains in 542 transcriptional activators
15c2hx6A_



36.9 42
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease;
PDBTitle: solution structure analysis of the phage t42 endoribonuclease regb
16c1umqA_



28.1 6
PDB header:dna-binding protein
Chain: A: PDB Molecule:photosynthetic apparatus regulatory protein;
PDBTitle: solution structure and dna binding of the effector domain2 from the global regulator prra(rega) from r. sphaeroides:3 insights into dna binding specificity
17d1umqa_



28.1 6
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
18d1ntca_



27.7 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
19c4l5eA_



26.2 25
PDB header:protein binding
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of a. aeolicus ntrc1 dna binding domain
20d1fipa_



21.1 6
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
21d1etob_



not modelled 17.7 6
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
22d2r6gf1



not modelled 16.1 12
Fold:MalF N-terminal region-like
Superfamily:MalF N-terminal region-like
Family:MalF N-terminal region-like
23c3e7lD_



not modelled 14.9 22
PDB header:transcription regulator
Chain: D: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigma54 activator ntrc4's dna binding2 domain
24d1etxa_



not modelled 13.9 6
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
25c2ks1A_



not modelled 13.4 18
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation
26c2jwaA_



not modelled 13.4 18
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: erbb2 transmembrane segment dimer spatial structure
27c2n2aA_



not modelled 12.9 18
PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: spatial structure of her2/erbb2 dimeric transmembrane domain in the2 presence of cytoplasmic juxtamembrane domains
28c6c0aB_



not modelled 11.3 19
PDB header:signaling protein
Chain: B: PDB Molecule:voltage-dependent l-type calcium channel subunit alpha-1c;
PDBTitle: actinin-1 ef-hand bound to the cav1.2 iq motif
29c6dadD_



not modelled 11.1 19
PDB header:calcium binding protein/membrane protein
Chain: D: PDB Molecule:voltage-dependent l-type calcium channel subunit alpha-1c;
PDBTitle: 1.65 angstrom crystal structure of the n97i ca/cam:cav1.2 iq domain2 complex
30c6daeD_



not modelled 11.1 18
PDB header:calcium binding protein/membrane protein
Chain: D: PDB Molecule:voltage-dependent l-type calcium channel subunit alpha-1c;
PDBTitle: 2.0 angstrom crystal structure of the d95v ca/cam:cav1.2 iq domain2 complex
31c1g2hA_



not modelled 9.8 17
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein tyrr homolog;
PDBTitle: solution structure of the dna-binding domain of the tyrr2 protein of haemophilus influenzae
32d1g2ha_



not modelled 9.8 17
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
33c2be6D_



not modelled 9.7 19
PDB header:membrane protein
Chain: D: PDB Molecule:voltage-dependent l-type calcium channel alpha-1c subunit;
PDBTitle: 2.0 a crystal structure of the cav1.2 iq domain-ca/cam complex
34c6dafD_



not modelled 9.0 19
PDB header:calcium binding protein/membrane protein
Chain: D: PDB Molecule:voltage-dependent l-type calcium channel subunit alpha-1c;
PDBTitle: 2.4 angstrom crystal structure of the f141l ca/cam:cav1.2 iq domain2 complex
35c6iiuA_



not modelled 8.6 11
PDB header:signaling protein
Chain: A: PDB Molecule:soluble cytochrome b562,thromboxane a2 receptor,rubredoxin,
PDBTitle: crystal structure of the human thromboxane a2 receptor bound to2 ramatroban
36c2be6F_



not modelled 8.4 19
PDB header:membrane protein
Chain: F: PDB Molecule:voltage-dependent l-type calcium channel alpha-1c subunit;
PDBTitle: 2.0 a crystal structure of the cav1.2 iq domain-ca/cam complex
37c6dadC_



not modelled 8.0 19
PDB header:calcium binding protein/membrane protein
Chain: C: PDB Molecule:voltage-dependent l-type calcium channel subunit alpha-1c;
PDBTitle: 1.65 angstrom crystal structure of the n97i ca/cam:cav1.2 iq domain2 complex
38c2m20B_



not modelled 7.6 16
PDB header:signaling protein
Chain: B: PDB Molecule:epidermal growth factor receptor;
PDBTitle: egfr transmembrane - juxtamembrane (tm-jm) segment in bicelles: md2 guided nmr refined structure.
39c1ojlD_



not modelled 7.3 16
PDB header:response regulator
Chain: D: PDB Molecule:transcriptional regulatory protein zrar;
PDBTitle: crystal structure of a sigma54-activator suggests the mechanism for2 the conformational switch necessary for sigma54 binding
40c5lq3F_



not modelled 6.6 17
PDB header:transport protein
Chain: F: PDB Molecule:cmeb;
PDBTitle: structures and transport dynamics of the campylobacter jejuni2 multidrug efflux pump cmeb

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below