Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0935_(pstC1)_1043303_1044319
DateFri Jul 26 01:50:53 BST 2019
Unique Job IDd8508c2d2fad54ca
SequenceMLARAGEVGR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:77.953 Y:48.482 Z:69.008
Model (left) based on template c4tqvI_
Top template information
PDB header:transport protein
Chain: I: PDB Molecule:algm1;
PDBTitle: crystal structure of a bacterial abc transporter involved in the2 import of the acidic polysaccharide alginate
Confidence and coverage
Confidence:100.0% Coverage: 84%
285 residues ( 84% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4tqvI_



100.0 17
PDB header:transport protein
Chain: I: PDB Molecule:algm1;
PDBTitle: crystal structure of a bacterial abc transporter involved in the2 import of the acidic polysaccharide alginate
2c3fh6F_



100.0 10
PDB header:transport protein
Chain: F: PDB Molecule:maltose transport system permease protein malf;
PDBTitle: crystal structure of the resting state maltose transporter from e.2 coli
3c2r6gF_



100.0 12
PDB header:hydrolase/transport protein
Chain: F: PDB Molecule:maltose transport system permease protein malf;
PDBTitle: the crystal structure of the e. coli maltose transporter
4d2r6gf2



100.0 13
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
5d2r6gg1



100.0 14
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
6c4tqvJ_



100.0 11
PDB header:transport protein
Chain: J: PDB Molecule:algm2;
PDBTitle: crystal structure of a bacterial abc transporter involved in the2 import of the acidic polysaccharide alginate
7c2onkC_



100.0 19
PDB header:membrane protein
Chain: C: PDB Molecule:molybdate/tungstate abc transporter, permease
PDBTitle: abc transporter modbc in complex with its binding protein2 moda
8d2onkc1



100.0 19
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
9d3d31c1



100.0 15
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
10c3d31D_



100.0 15
PDB header:transport protein
Chain: D: PDB Molecule:sulfate/molybdate abc transporter, permease protein;
PDBTitle: modbc from methanosarcina acetivorans
11c4ymuC_



100.0 21
PDB header:protein binding/transport protein
Chain: C: PDB Molecule:abc-type amino acid transport system, permease component;
PDBTitle: crystal structure of an amino acid abc transporter complex with2 arginines and atps
12d3dhwa1



99.9 18
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
13c5kbuA_



81.6 16
PDB header:transport protein
Chain: A: PDB Molecule:glutamate receptor 2,voltage-dependent calcium channel
PDBTitle: cryo-em structure of glua2-2xstz complex at 7.8 angstrom resolution
14c2m8gX_



21.6 13
PDB header:transcription
Chain: X: PDB Molecule:transcriptional regulator;
PDBTitle: structure, function, and tethering of dna-binding domains in 542 transcriptional activators
15c2n2aA_



20.2 15
PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: spatial structure of her2/erbb2 dimeric transmembrane domain in the2 presence of cytoplasmic juxtamembrane domains
16c4qiwT_



12.9 21
PDB header:transcription
Chain: T: PDB Molecule:dna-directed rna polymerase subunit k;
PDBTitle: crystal structure of euryarchaeal rna polymerase from thermococcus2 kodakarensis
17c4l5eA_



12.6 13
PDB header:protein binding
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of a. aeolicus ntrc1 dna binding domain
18c1twcF_



11.8 29
PDB header:transcription
Chain: F: PDB Molecule:dna-directed rna polymerases i, ii, and iii 23
PDBTitle: rna polymerase ii complexed with gtp
19d1twff_



11.8 29
Fold:RPB6/omega subunit-like
Superfamily:RPB6/omega subunit-like
Family:RPB6
20c2pmzW_



11.5 14
PDB header:translation, transferase
Chain: W: PDB Molecule:dna-directed rna polymerase subunit k;
PDBTitle: archaeal rna polymerase from sulfolobus solfataricus
21d1qkla_



not modelled 10.2 29
Fold:RPB6/omega subunit-like
Superfamily:RPB6/omega subunit-like
Family:RPB6
22c2hx6A_



not modelled 9.8 31
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease;
PDBTitle: solution structure analysis of the phage t42 endoribonuclease regb
23d1umqa_



not modelled 9.2 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
24c1umqA_



not modelled 9.2 16
PDB header:dna-binding protein
Chain: A: PDB Molecule:photosynthetic apparatus regulatory protein;
PDBTitle: solution structure and dna binding of the effector domain2 from the global regulator prra(rega) from r. sphaeroides:3 insights into dna binding specificity
25d1ntca_



not modelled 8.8 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
26c2ks1A_



not modelled 8.1 15
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation
27c2jwaA_



not modelled 8.1 15
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: erbb2 transmembrane segment dimer spatial structure
28c3h0gF_



not modelled 7.7 29
PDB header:transcription
Chain: F: PDB Molecule:dna-directed rna polymerases i, ii, and iii subunit rpabc2;
PDBTitle: rna polymerase ii from schizosaccharomyces pombe
29c3e7lD_



not modelled 7.5 13
PDB header:transcription regulator
Chain: D: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigma54 activator ntrc4's dna binding2 domain
30d1etob_



not modelled 7.2 6
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
31d1fipa_



not modelled 6.8 6
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
32c3tdsC_



not modelled 6.5 17
PDB header:membrane protein
Chain: C: PDB Molecule:formate/nitrite transporter;
PDBTitle: crystal structure of hsc f194i
33c4v1ad_



not modelled 6.3 17
PDB header:ribosome
Chain: D: PDB Molecule:
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 22 of 2
34c2momC_



not modelled 5.7 18
PDB header:membrane protein
Chain: C: PDB Molecule:lysosome-associated membrane glycoprotein 2;
PDBTitle: structural insights of tm domain of lamp-2a in dpc micelles
35c2momB_



not modelled 5.7 18
PDB header:membrane protein
Chain: B: PDB Molecule:lysosome-associated membrane glycoprotein 2;
PDBTitle: structural insights of tm domain of lamp-2a in dpc micelles
36c4jw1A_



not modelled 5.6 7
PDB header:hydrolase activator
Chain: A: PDB Molecule:effector protein b;
PDBTitle: crystal structure of n-terminal 618-residue fragment of lepb from2 legionella pneumophila
37d1cf7a_



not modelled 5.3 14
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Cell cycle transcription factor e2f-dp
38c1pyuD_



not modelled 5.3 15
PDB header:lyase
Chain: D: PDB Molecule:aspartate 1-decarboxylase alfa chain;
PDBTitle: processed aspartate decarboxylase mutant with ser25 mutated to cys
39c3wg7T_



not modelled 5.2 9
PDB header:oxidoreductase
Chain: T: PDB Molecule:cytochrome c oxidase subunit 6a2, mitochondrial;
PDBTitle: a 1.9 angstrom radiation damage free x-ray structure of large (420kda)2 protein by femtosecond crystallography
40d1etxa_



not modelled 5.1 6
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like

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Transmembrane helix prediction 

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