Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0944_(-)_1053769_1054245
DateFri Jul 26 01:50:54 BST 2019
Unique Job IDd0b96bc227dc0f05
SequenceVAGTPQPRAL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:46.963 Y:38.906 Z:40.233
Model (left) based on template c1nnjA_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:formamidopyrimidine-dna glycosylase;
PDBTitle: crystal structure complex between the lactococcus lactis fpg and an2 abasic site containing dna
Confidence and coverage
Confidence:100.0% Coverage: 89%
141 residues ( 89% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1nnjA_
100.0 28
PDB header:hydrolase
Chain: A: PDB Molecule:formamidopyrimidine-dna glycosylase;
PDBTitle: crystal structure complex between the lactococcus lactis fpg and an2 abasic site containing dna
2c2f5qA_
100.0 33
PDB header:hydrolase/dna
Chain: A: PDB Molecule:formamidopyrimidine-dna glycosidase;
PDBTitle: catalytically inactive (e3q) mutm crosslinked to oxog:c2 containing dna cc2
3c1k82D_
100.0 31
PDB header:hydrolase/dna
Chain: D: PDB Molecule:formamidopyrimidine-dna glycosylase;
PDBTitle: crystal structure of e.coli formamidopyrimidine-dna2 glycosylase (fpg) covalently trapped with dna
4c1ee8A_
100.0 33
PDB header:dna binding protein
Chain: A: PDB Molecule:mutm (fpg) protein;
PDBTitle: crystal structure of mutm (fpg) protein from thermus thermophilus hb8
5c2opfA_
100.0 27
PDB header:hydrolase/dna
Chain: A: PDB Molecule:endonuclease viii;
PDBTitle: crystal structure of the dna repair enzyme endonuclease-viii (nei)2 from e. coli (r252a) in complex with ap-site containing dna substrate
6c3twkB_
100.0 31
PDB header:hydrolase
Chain: B: PDB Molecule:formamidopyrimidine-dna glycosylase 1;
PDBTitle: crystal structure of arabidopsis thaliana fpg
7c3a46B_
100.0 24
PDB header:hydrolase
Chain: B: PDB Molecule:formamidopyrimidine-dna glycosylase;
PDBTitle: crystal structure of mvnei1/thf complex
8c3w0fA_
100.0 21
PDB header:hydrolase
Chain: A: PDB Molecule:endonuclease 8-like 3;
PDBTitle: crystal structure of mouse endonuclease viii-like 3 (mneil3)
9c4mb7A_
100.0 17
PDB header:hydrolase
Chain: A: PDB Molecule:endonuclease 8-like l720;
PDBTitle: crystal structure of a viral dna glycosylase
10c1tdhA_
100.0 26
PDB header:hydrolase
Chain: A: PDB Molecule:nei endonuclease viii-like 1;
PDBTitle: crystal structure of human endonuclease viii-like 1 (neil1)
11c5ituB_
100.0 28
PDB header:dna binding protein/dna
Chain: B: PDB Molecule:endonuclease 8-like 1;
PDBTitle: crystal structure of human neil1(242k) bound to duplex dna containing2 thf
12d1r2za1
100.0 33
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Middle domain of MutM-like DNA repair proteins
13d1ee8a1
100.0 31
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Middle domain of MutM-like DNA repair proteins
14d1k82a1
100.0 31
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Middle domain of MutM-like DNA repair proteins
15d1tdza1
100.0 29
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Middle domain of MutM-like DNA repair proteins
16d1k3xa1
100.0 27
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Middle domain of MutM-like DNA repair proteins
17d1tdha1
99.8 33
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Middle domain of MutM-like DNA repair proteins
18d2hkja1
99.8 19
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Topoisomerase VI-B subunit middle domain
19d1ee8a3
99.6 37
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
20d1tdza3
99.6 30
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
21d1r2za3
not modelled 99.5 35
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
22d1k82a3
not modelled 99.5 35
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
23d1l1ta3
not modelled 99.5 35
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
24d1k3xa3
not modelled 99.4 32
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
25c1mx0D_
not modelled 97.5 22
PDB header:isomerase
Chain: D: PDB Molecule:type ii dna topoisomerase vi subunit b;
PDBTitle: structure of topoisomerase subunit
26d2uubm1
not modelled 97.2 28
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Ribosomal protein S13
27c2zkqm_
not modelled 97.1 27
PDB header:ribosomal protein/rna
Chain: M: PDB Molecule:
PDBTitle: structure of a mammalian ribosomal 40s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
28c3iz6M_
not modelled 97.1 25
PDB header:ribosome
Chain: M: PDB Molecule:40s ribosomal protein s18 (s13p);
PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
29d2gy9m1
not modelled 97.0 25
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Ribosomal protein S13
30c5o5jM_
not modelled 97.0 28
PDB header:ribosome
Chain: M: PDB Molecule:30s ribosomal protein s13;
PDBTitle: structure of the 30s small ribosomal subunit from mycobacterium2 smegmatis
31d1i94m_
not modelled 97.0 29
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Ribosomal protein S13
32c3j20O_
not modelled 96.9 27
PDB header:ribosome
Chain: O: PDB Molecule:30s ribosomal protein s13p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)
33c2xznM_
not modelled 96.9 29
PDB header:ribosome
Chain: M: PDB Molecule:rps18e;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
34c5xyiS_
not modelled 96.7 20
PDB header:ribosome
Chain: S: PDB Molecule:ribosomal protein s13p/s18e, putative;
PDBTitle: small subunit of trichomonas vaginalis ribosome
35c2zbkB_
not modelled 96.6 22
PDB header:isomerase
Chain: B: PDB Molecule:type 2 dna topoisomerase 6 subunit b;
PDBTitle: crystal structure of an intact type ii dna topoisomerase:2 insights into dna transfer mechanisms
36c3zeyM_
not modelled 96.4 20
PDB header:ribosome
Chain: M: PDB Molecule:40s ribosomal protein s18, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
37c3doaA_
not modelled 96.2 21
PDB header:protein binding
Chain: A: PDB Molecule:fibrinogen binding protein;
PDBTitle: the crystal structure of the fibrinogen binding protein from2 staphylococcus aureus
38c5mmjm_
not modelled 95.9 22
PDB header:ribosome
Chain: M: PDB Molecule:
PDBTitle: structure of the small subunit of the chloroplast ribosome
39c4gc5A_
not modelled 95.4 10
PDB header:transferase
Chain: A: PDB Molecule:dimethyladenosine transferase 1, mitochondrial;
PDBTitle: crystal structure of murine tfb1m
40c6ifsB_
not modelled 95.1 11
PDB header:transferase
Chain: B: PDB Molecule:ribosomal rna small subunit methyltransferase a;
PDBTitle: ksga from bacillus subtilis 168
41c5h3xA_
not modelled 94.0 18
PDB header:cell adhesion
Chain: A: PDB Molecule:fibronectin/fibrinogen binding protein;
PDBTitle: the structure of the n-terminal of the fibronectin/fibrinogen-binding2 protein from streptococcus suis (fbps)
42c4itqA_
not modelled 93.7 24
PDB header:gene regulation, structural protein/dna
Chain: A: PDB Molecule:putative uncharacterized protein sco1480;
PDBTitle: crystal structure of hypothetical protein sco1480 bound to dna
43c3fuxB_
not modelled 93.7 17
PDB header:transferase
Chain: B: PDB Molecule:dimethyladenosine transferase;
PDBTitle: t. thermophilus 16s rrna a1518 and a1519 methyltransferase (ksga) in2 complex with 5'-methylthioadenosine in space group p212121
44c6erpJ_
not modelled 93.2 9
PDB header:transcription
Chain: J: PDB Molecule:dimethyladenosine transferase 2, mitochondrial;
PDBTitle: structure of the human mitochondrial transcription initiation complex2 at the lsp promoter
45c2q2eB_
not modelled 92.9 17
PDB header:isomerase
Chain: B: PDB Molecule:type 2 dna topoisomerase 6 subunit b;
PDBTitle: crystal structure of the topoisomerase vi holoenzyme from2 methanosarcina mazei
46d1qyra_
not modelled 91.5 25
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:rRNA adenine dimethylase-like
47d2i0za2
not modelled 90.6 12
Fold:HI0933 insert domain-like
Superfamily:HI0933 insert domain-like
Family:HI0933 insert domain-like
48c3fteA_
not modelled 89.3 26
PDB header:transferase/rna
Chain: A: PDB Molecule:dimethyladenosine transferase;
PDBTitle: crystal structure of a. aeolicus ksga in complex with rna
49c4jxjA_
not modelled 88.0 23
PDB header:transferase
Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase a;
PDBTitle: crystal structure of ribosomal rna small subunit methyltransferase a2 from rickettsia bellii determined by iodide sad phasing
50c2h1rA_
not modelled 86.4 9
PDB header:transferase
Chain: A: PDB Molecule:dimethyladenosine transferase, putative;
PDBTitle: crystal structure of a dimethyladenosine transferase from2 plasmodium falciparum
51c2gb5B_
not modelled 85.1 25
PDB header:hydrolase
Chain: B: PDB Molecule:nadh pyrophosphatase;
PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution
52c3uzuA_
not modelled 83.8 9
PDB header:transferase
Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase a;
PDBTitle: the structure of the ribosomal rna small subunit methyltransferase a2 from burkholderia pseudomallei
53c3tqsB_
not modelled 82.7 7
PDB header:transferase
Chain: B: PDB Molecule:ribosomal rna small subunit methyltransferase a;
PDBTitle: structure of the dimethyladenosine transferase (ksga) from coxiella2 burnetii
54c3bbnM_
not modelled 81.1 26
PDB header:ribosome
Chain: M: PDB Molecule:ribosomal protein s13;
PDBTitle: homology model for the spinach chloroplast 30s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome.
55c2m6nA_
not modelled 77.4 19
PDB header:cell cycle
Chain: A: PDB Molecule:f-box only protein 5;
PDBTitle: 3d solution structure of emi1 (early mitotic inhibitor 1)
56c1dvbA_
not modelled 73.4 15
PDB header:electron transport
Chain: A: PDB Molecule:rubrerythrin;
PDBTitle: rubrerythrin
57c4ui9S_
not modelled 72.5 11
PDB header:cell cycle
Chain: S: PDB Molecule:f-box only protein 5;
PDBTitle: atomic structure of the human anaphase-promoting complex
58c3grrA_
not modelled 71.3 16
PDB header:transferase
Chain: A: PDB Molecule:dimethyladenosine transferase;
PDBTitle: crystal structure of the complex between s-adenosyl homocysteine and2 methanocaldococcus jannaschi dim1.
59d2fiya1
not modelled 71.2 22
Fold:FdhE-like
Superfamily:FdhE-like
Family:FdhE-like
60c1yuzB_
not modelled 68.5 18
PDB header:oxidoreductase
Chain: B: PDB Molecule:nigerythrin;
PDBTitle: partially reduced state of nigerythrin
61c3fydA_
not modelled 66.0 16
PDB header:transferase
Chain: A: PDB Molecule:probable dimethyladenosine transferase;
PDBTitle: crystal structure of dim1 from the thermophilic archeon,2 methanocaldococcus jannaschi
62c2jneA_
not modelled 63.5 17
PDB header:metal binding protein
Chain: A: PDB Molecule:hypothetical protein yfgj;
PDBTitle: nmr structure of e.coli yfgj modelled with two zn+2 bound. northeast2 structural genomics consortium target er317.
63d2jnea1
not modelled 63.5 17
Fold:Rubredoxin-like
Superfamily:YfgJ-like
Family:YfgJ-like
64d2f4ma1
not modelled 63.3 21
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Transglutaminase core
65c6o3pA_
not modelled 62.4 16
PDB header:hydrolase
Chain: A: PDB Molecule:peroxisomal nadh pyrophosphatase nudt12;
PDBTitle: crystal structure of the catalytic domain of mouse nudt12 in complex2 with amp and 3 mg2+ ions
66c4rulA_
not modelled 61.4 18
PDB header:isomerase/dna
Chain: A: PDB Molecule:dna topoisomerase 1;
PDBTitle: crystal structure of full-length e.coli topoisomerase i in complex2 with ssdna
67c1i3qI_
not modelled 61.1 21
PDB header:transcription
Chain: I: PDB Molecule:dna-directed rna polymerase ii 14.2kd
PDBTitle: rna polymerase ii crystal form i at 3.1 a resolution
68c2mvwA_
not modelled 59.3 20
PDB header:metal binding protein
Chain: A: PDB Molecule:protein pml;
PDBTitle: solution structure of the trim19 b-box1 (b1) of human promyelocytic2 leukemia (pml)
69c2jrpA_
not modelled 59.0 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative cytoplasmic protein;
PDBTitle: solution nmr structure of yfgj from salmonella typhimurium2 modeled with two zn+2 bound, northeast structural genomics3 consortium target str86
70c2pziA_
not modelled 58.3 29
PDB header:transferase
Chain: A: PDB Molecule:probable serine/threonine-protein kinase pkng;
PDBTitle: crystal structure of protein kinase pkng from mycobacterium2 tuberculosis in complex with tetrahydrobenzothiophene ax20017
71d2gqfa2
not modelled 58.1 7
Fold:HI0933 insert domain-like
Superfamily:HI0933 insert domain-like
Family:HI0933 insert domain-like
72c2lcqA_
not modelled 57.6 35
PDB header:metal binding protein
Chain: A: PDB Molecule:putative toxin vapc6;
PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii
73c5ijlA_
not modelled 55.7 47
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase ii large subunit;
PDBTitle: d-family dna polymerase - dp2 subunit (catalytic subunit)
74c3u50C_
not modelled 55.5 26
PDB header:dna binding protein
Chain: C: PDB Molecule:telomerase-associated protein 82;
PDBTitle: crystal structure of the tetrahymena telomerase processivity factor2 teb1 ob-c
75d1tdha3
not modelled 54.0 20
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
76c2hr5B_
not modelled 53.8 50
PDB header:metal binding protein
Chain: B: PDB Molecule:rubrerythrin;
PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form
77c2aklA_
not modelled 53.0 39
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:phna-like protein pa0128;
PDBTitle: solution structure for phn-a like protein pa0128 from2 pseudomonas aeruginosa
78c6i52C_
not modelled 51.6 27
PDB header:dna binding protein
Chain: C: PDB Molecule:replication factor a protein 1;
PDBTitle: yeast rpa bound to ssdna
79d2akla2
not modelled 50.4 39
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:PhnA zinc-binding domain
80c6hmsB_
not modelled 49.9 47
PDB header:replication
Chain: B: PDB Molecule:dna polymerase ii large subunit,dna polymerase ii large
PDBTitle: cryo-em map of dna polymerase d from pyrococcus abyssi in complex with2 dna
81c5fywW_
not modelled 49.4 23
PDB header:transcription
Chain: W: PDB Molecule:transcription initiation factor iie subunit alpha;
PDBTitle: transcription initiation complex structures elucidate dna opening (oc)
82c2kpiA_
not modelled 47.9 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein sco3027;
PDBTitle: solution nmr structure of streptomyces coelicolor sco30272 modeled with zn+2 bound, northeast structural genomics3 consortium target rr58
83c4gopC_
not modelled 47.4 23
PDB header:dna binding protein/dna
Chain: C: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure and conformational change of a replication protein a2 heterotrimer bound to ssdna
84c2js4A_
not modelled 47.2 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0434 protein bb2007;
PDBTitle: solution nmr structure of bordetella bronchiseptica protein2 bb2007. northeast structural genomics consortium target3 bor54
85c3wwnB_
not modelled 46.8 29
PDB header:metal binding protein/transferase
Chain: B: PDB Molecule:orff;
PDBTitle: crystal structure of lysz from thermus thermophilus complex with lysw
86c2owoA_
not modelled 45.7 35
PDB header:ligase/dna
Chain: A: PDB Molecule:dna ligase;
PDBTitle: last stop on the road to repair: structure of e.coli dna ligase bound2 to nicked dna-adenylate
87c6f5zC_
not modelled 45.6 4
PDB header:transferase
Chain: C: PDB Molecule:upf0434 family protein;
PDBTitle: complex between the haloferax volcanii trm112 methyltransferase2 activator and the hvo_0019 putative methyltransferase
88c5fjaI_
not modelled 44.9 24
PDB header:transcription
Chain: I: PDB Molecule:dna-directed rna polymerase iii subunit rpc10;
PDBTitle: cryo-em structure of yeast rna polymerase iii at 4.7 a
89d1pfta_
not modelled 44.4 19
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
90d1ibia1
not modelled 44.3 50
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
91c2jr6A_
not modelled 43.0 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0434 protein nma0874;
PDBTitle: solution structure of upf0434 protein nma0874. northeast structural2 genomics target mr32
92d2avue1
not modelled 42.9 20
Fold:FlhC-like
Superfamily:FlhC-like
Family:FlhC-like
93c4c2mX_
not modelled 42.3 29
PDB header:transcription
Chain: X: PDB Molecule:dna-directed rna polymerase i subunit rpa12;
PDBTitle: structure of rna polymerase i at 2.8 a resolution
94c3na7A_
not modelled 41.8 17
PDB header:gene regulation, chaperone
Chain: A: PDB Molecule:hp0958;
PDBTitle: 2.2 angstrom structure of the hp0958 protein from helicobacter pylori2 ccug 17874
95d1twfi2
not modelled 41.7 28
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
96c5fmfR_
not modelled 41.6 24
PDB header:transcription
Chain: R: PDB Molecule:transcription initiation factor iie subunit alpha, tfa1;
PDBTitle: the p-lobe of rna polymerase ii pre-initiation complex
97c4esjA_
not modelled 41.0 36
PDB header:hydrolase/dna
Chain: A: PDB Molecule:type-2 restriction enzyme dpni;
PDBTitle: restriction endonuclease dpni in complex with target dna
98c1dgsB_
not modelled 40.8 29
PDB header:ligase
Chain: B: PDB Molecule:dna ligase;
PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis
99c5flmI_
not modelled 40.6 17
PDB header:transcription
Chain: I: PDB Molecule:dna-directed rna polymerase ii subunit rpb9;
PDBTitle: structure of transcribing mammalian rna polymerase ii
100c2l6lA_
not modelled 40.2 15
PDB header:chaperone
Chain: A: PDB Molecule:dnaj homolog subfamily c member 24;
PDBTitle: solution structure of human j-protein co-chaperone, dph4
101d1qf8a_
not modelled 39.9 28
Fold:Rubredoxin-like
Superfamily:Casein kinase II beta subunit
Family:Casein kinase II beta subunit
102c5oqjW_
not modelled 39.2 24
PDB header:transcription
Chain: W: PDB Molecule:transcription initiation factor iie subunit alpha;
PDBTitle: structure of yeast transcription pre-initiation complex with tfiih
103c5oqmW_
not modelled 38.9 24
PDB header:transcription
Chain: W: PDB Molecule:transcription factor tfiie subunit;
PDBTitle: structure of yeast transcription pre-initiation complex with tfiih and2 core mediator
104d1ctla1
not modelled 38.6 45
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
105c3a44D_
not modelled 38.5 26
PDB header:metal binding protein
Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa;
PDBTitle: crystal structure of hypa in the dimeric form
106d1zq9a1
not modelled 38.5 16
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:rRNA adenine dimethylase-like
107c2avuF_
not modelled 38.2 20
PDB header:transcription activator
Chain: F: PDB Molecule:flagellar transcriptional activator flhc;
PDBTitle: structure of the escherichia coli flhdc complex, a2 prokaryotic heteromeric regulator of transcription
108d1l1oc_
not modelled 38.0 32
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
109c5ah5B_
not modelled 37.7 29
PDB header:ligase/rna
Chain: B: PDB Molecule:leucine--trna ligase;
PDBTitle: crystal structure of the ternary complex of agrobacterium2 radiobacter k84 agnb2 leurs-trna-leuams
110d1odha_
not modelled 37.5 13
Fold:GCM domain
Superfamily:GCM domain
Family:GCM domain
111d1x3za1
not modelled 37.5 26
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Transglutaminase core
112c1wz2B_
not modelled 37.4 20
PDB header:ligase/rna
Chain: B: PDB Molecule:leucyl-trna synthetase;
PDBTitle: the crystal structure of leucyl-trna synthetase and trna(leucine)2 complex
113c2jhnB_
not modelled 36.7 26
PDB header:hydrolase
Chain: B: PDB Molecule:3-methyladenine dna-glycosylase;
PDBTitle: 3-methyladenine dna-glycosylase from archaeoglobus fulgidus
114d2b9da1
not modelled 35.4 36
Fold:E7 C-terminal domain-like
Superfamily:E7 C-terminal domain-like
Family:E7 C-terminal domain-like
115d2jnya1
not modelled 35.4 13
Fold:Trm112p-like
Superfamily:Trm112p-like
Family:Trm112p-like
116c3s6iA_
not modelled 35.2 30
PDB header:hydrolase/dna
Chain: A: PDB Molecule:dna-3-methyladenine glycosylase 1;
PDBTitle: schizosaccaromyces pombe 3-methyladenine dna glycosylase (mag1) in2 complex with abasic-dna.
117c3eg9B_
not modelled 34.2 16
PDB header:protein transport
Chain: B: PDB Molecule:sec24 related gene family, member d;
PDBTitle: crystal structure of the mammalian copii-coat protein sec23/24 bound2 to the transport signal sequence of membrin
118c2riqA_
not modelled 34.1 29
PDB header:transferase
Chain: A: PDB Molecule:poly [adp-ribose] polymerase 1;
PDBTitle: crystal structure of the third zinc-binding domain of human parp-1
119c4glxA_
not modelled 34.1 35
PDB header:ligase/ligase inhibitor/dna
Chain: A: PDB Molecule:dna ligase;
PDBTitle: dna ligase a in complex with inhibitor
120c4lw2C_
not modelled 33.9 13
PDB header:lyase
Chain: C: PDB Molecule:cysteine sulfinate desulfinase;
PDBTitle: structural changes during cysteine desulfurase csda and sulfur-2 acceptor csde interactions provide insight into the trans-3 persulfuration

Binding site prediction 

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